BAC Information

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BAC

Clone NameB6Ng01-048G12
Chromosome6 (Build37)
Map Location 11,278,897 - 11,280,061
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048G12.bB6Ng01-048G12.g
ACCDH872973DH872974
length1,1361,182
definitionDH872973|Mus musculus domesticus DNA, BAC clone: B6Ng01-048G12, 5' end.DH872974|Mus musculus domesticus DNA, BAC clone: B6Ng01-048G12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcagataagagtgacttctggaaaagagatttaaaatctaaga
tgggatgacaagccccaaaacatgagtagataacaatgagtaggtaatga
gtagaaaataaaggttcgaaattccaggcaaataattttgtctcaataac
tactgaaaggattagcagttgtgctcatgatttatggagatggcagatcg
ttatcggtgtagaaggtgatttgagtaattctgaaataataaagtgaacc
gaggaactttccttgaaaagactgtttcatcccaacctttagtcgtgaag
gcacatgtaattattccatgtaaggtcttgcttagttacatacagccaca
ttaattttaccttgtaatcactaacacttttgagtgtcctgttcttataa
cattagcttgacatggaaatcatagctttgagctttaggagaaagttcaa
atctagatatctgatatatttttacaaatatgatatatgatatataacca
gaaggaaaagattttaaaccttgtcaatgagaatttttatataggcacaa
gatagtgtatgcttaatatactaattttaaaagtcagcagctgagttgtc
ctttctttgattatagtcaactgttttatgaacatcaaagttttcaaagt
aatgcaaaagggttgctaagtggaaatatttcaggagttctgaaagtata
agcttgacagagtcatagtcttaaaatccaagtttacaagaaaatttatt
atactcatatgttgtggaagtgaaatgtggtgtgtggcattaaatcaaga
aacagacagggaacaccaacacctactgttctatgatacagtgtaaacaa
gaaaacaaaaagacagaaagaaaaattaccaggaggagattacataaaag
cacctgttaagctactattctaggctctgtcctgcgctctttaaaaacac
ctttctctttttaaatgctatactacaaagaagaaaataaaaattgccag
tgatcactggaacatatttacagctcttgtaatcttgagtattgcaatca
aaagaagttgataccttacataaatatagctgtagcagttacaagaatag
catgtatgtgattgggtcaaggctggaagcattatc
gaattctttgtttagctctgtcccccatttttgaataaggttatttgatt
ctctggtgtcaacttcttgagttatatattggatattagccctctatcag
atgtagaattggtaaagatctttctgcaatctgttggctgccattttgtc
ctattgtcagtgtcctttgccttacagaagctttgtaattttatgaggtc
ccatttgtcagttgttgatctcagagtataaacaattggtgttctgctca
ggaactttccccctgtgtctatgtgtctgagagtgttctccactttctct
tctattagtttcagtggatctggctttatgtggaggtcctcgatctactt
gaaattgagctttgtacaaggagataagaatggaaattagtgtggtggtt
cctcagaaaattggacatagtattatctgaggacccagcaataccactcc
tgagcatatacccaaaagatgctctaacaaataacaaggacacatgctcc
actatgttcacagcaaccttatttataatagccagaagctggaaagaacc
caaatgtccttcaacagagaaatggatgaagaaaaggtttacacaataga
gtactacttaactattagaaacaatgacttcatgaaattcttaggcaaac
agatagaactagaaaatatcatcctgagtgaggtaacctaatcacaaaag
aacacatggtatacattcactgatttcactgataagtgggtattagccca
taagctgggattacccaagatacaattcacagatcacatgtagctcacga
agaaggaaggccaagtgtgggtgctttggtccttcttagaaaggggacaa
aatactcatgggagcaaatatgagacaagtatggagcagagactgaagca
aagccatcaagactatccactgggatcatccatatacatcacgaacccag
acctatgtgggtgcaagagtacgtgctgacagtagcatgtatagctgtca
ctgaagcactgcagagctgacaaatcagagggccatgctgagcagtcatt
gacttatgtagcaagggtccatgagtccaatggagagtaaaaagatctag
gactgtaaggtttacatccttatgacatattactacgaatctgaagctct
ggactaaccacactcggattcccatgtggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_11278897_11280061
seq2: B6Ng01-048G12.b_42_1177

seq1  GAATTCTTCAGATAAGAGTGACTTCTGGAAAAGAGATTTAAAATCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGATAAGAGTGACTTCTGGAAAAGAGATTTAAAATCTAAGA  50

seq1  TGGGATGACAAGCCCCAAAACATGAGTAGATAACAATGAGTAGGTAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGACAAGCCCCAAAACATGAGTAGATAACAATGAGTAGGTAATGA  100

seq1  GTAGAAAATAAAGGTTCGAAATTCCAGGCAAATAATTTTGTCTCAATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAATAAAGGTTCGAAATTCCAGGCAAATAATTTTGTCTCAATAAC  150

seq1  TACTGAAAGGATTAGCAGTTGTGCTCATGATTTATGGAGATGGCAGATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAGGATTAGCAGTTGTGCTCATGATTTATGGAGATGGCAGATCG  200

seq1  TTATCGGTGTAGAAGGTGATTTGAGTAATTCTGAAATAATAAAGTGAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGGTGTAGAAGGTGATTTGAGTAATTCTGAAATAATAAAGTGAACC  250

seq1  GAGGAACTTTCCTTGAAAAGACTGTTTCATCCCAACCTTTAGTCGTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACTTTCCTTGAAAAGACTGTTTCATCCCAACCTTTAGTCGTGAAG  300

seq1  GCACATGTAATTATTCCATGTAAGGTCTTGCTTAGTTACATACAGCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGTAATTATTCCATGTAAGGTCTTGCTTAGTTACATACAGCCACA  350

seq1  TTAATTTTACCTTGTAATCACTAACACTTTTGAGTGTCCTGTTCTTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTACCTTGTAATCACTAACACTTTTGAGTGTCCTGTTCTTATAA  400

seq1  CATTAGCTTGACATGGAAATCATAGCTTTGAGCTTTAGGAGAAAGTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTTGACATGGAAATCATAGCTTTGAGCTTTAGGAGAAAGTTCAA  450

seq1  ATCTAGATATCTGATATATTTTTACAAATATGATATATGATATATAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGATATCTGATATATTTTTACAAATATGATATATGATATATAACCA  500

seq1  GAAGGAAAAGATTTTAAACCTTGTCAATGAGAATTTTTATATAGGCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAGATTTTAAACCTTGTCAATGAGAATTTTTATATAGGCACAA  550

seq1  GATAGTGTATGCTTAATATACTAATTTTAAAAGTCAGCAGCTGAGTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGTATGCTTAATATACTAATTTTAAAAGTCAGCAGCTGAGTTGTC  600

seq1  CTTTCTTTGATTATAGTCAACTGTTTTATGAACATCAAAGTTTTCAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTGATTATAGTCAACTGTTTTATGAACATCAAAGTTTTCAAAGT  650

seq1  AATGCAAAAGGGTTGCTAAGTGGAAATATTTCAGGAGTTCTGAAAGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAAGGGTTGCTAAGTGGAAATATTTCAGGAGTTCTGAAAGTATA  700

seq1  AGCTTGACAGAGTCATAGTCTTAAAATCCAAGTTTACAAGAAAATTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGACAGAGTCATAGTCTTAAAATCCAAGTTTACAAGAAAATTTATT  750

seq1  ATACTCATATGTTGTGGAAGTGAAATGTGGTGTGTGGCATTAAATCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCATATGTTGTGGAAGTGAAATGTGGTGTGTGGCATTAAATCAAGA  800

seq1  AACAGACAGGGAACACCAACACCTACTGTTCTATGATACAGTGTAAAACA  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACAGACAGGGAACACCAACACCTACTGTTCTATGATACAGTGT-AAACA  849

seq1  AGAAAACAAAAAAGACAAGAAAGAAAAAATTACCAGGAGGAAGATTACAA  900
      ||||||| |||||||| |||||| |||||||||||||||| |||||||| 
seq2  AGAAAAC-AAAAAGAC-AGAAAG-AAAAATTACCAGGAGG-AGATTACA-  894

seq1  TAAAAAGCACCTGTTTAAGCTACTATTTTCTAGGCTCTGTCCTTGCGCTC  950
        ||||||||||| |||||||||||  ||||||||||||||| |||||||
seq2  -TAAAAGCACCTG-TTAAGCTACTA--TTCTAGGCTCTGTCC-TGCGCTC  939

seq1  TTTAAAAAACACCTTTCTCTTTTTAAATTGCTTATAACTACAAAAGAAAG  1000
      ||| ||||||||||||||||||||||| ||| ||| ||||||||   |||
seq2  TTT-AAAAACACCTTTCTCTTTTTAAA-TGC-TAT-ACTACAAA--GAAG  983

seq1  AAAATAAAAATTGCCAGTGAATTCACTGGAAACATATTTTACAGCTC-TG  1049
      ||||||||||||||||||||  ||||||| |||||| |||||||||| ||
seq2  AAAATAAAAATTGCCAGTGA--TCACTGG-AACATA-TTTACAGCTCTTG  1029

seq1  TACATC-TGAGTATTGCAAACCAAAAAGAAAGTTGAATACCCTACATAAA  1098
      || ||| |||||||||||| |  ||||| |||||| ||||| ||||||||
seq2  TA-ATCTTGAGTATTGCAATC--AAAAG-AAGTTG-ATACCTTACATAAA  1074

seq1  TATAGGCTGTAGCAGTTACAAAGATAGCATGCATGTGATT-GGTCAGAGG  1147
      |||| ||||||||||||||||  |||||||| |||||||| |||||    
seq2  TATA-GCTGTAGCAGTTACAAGAATAGCATGTATGTGATTGGGTCA---A  1120

seq1  GGCAGGGAAGGCATTATC  1165
      ||| ||  | ||||||||
seq2  GGCTGG--AAGCATTATC  1136