BAC Information

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BAC

Clone NameB6Ng01-048H22
Chromosome6 (Build37)
Map Location 32,574,098 - 32,698,252
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620104, 1700012A03Rik, Plxna4
Downstream geneChchd3, LOC100039118, Gm1401, Exoc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048H22.bB6Ng01-048H22.g
ACCDH873036DH873037
length1,085863
definitionDH873036|Mus musculus domesticus DNA, BAC clone: B6Ng01-048H22, 5' end.DH873037|Mus musculus domesticus DNA, BAC clone: B6Ng01-048H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,574,098 - 32,575,219)(32,697,388 - 32,698,252)
sequence
gaattcattcaaggtcatacagttagaaaatggcaaaaagaaagttcaga
tccacactgggtctcataaaagccatgccctttacctggctaagctactt
tagactagaccctttagatgaggctttggttagataatttactatagatg
agaccagaatgaattcaagggctggaaagatagctcagtggtaagagcac
acatactgctcttgaagaggacctgagtttggtgcccagtaatcatgttg
agggactcacaaccatttcatatccagctctaggggatcaggagcctcct
tttagcctccaggagcacccacacatatgcacacatgcacaaataaatct
taaaaacaaagaattcagagtcttcaacaagggctcagggagcaaagtat
aagaggaccttgacccttgaagtagaagtgcaatggagttgcaacaaaga
cctgaagccagagctgtactccaaggtttggagggcaaacatccccagaa
tttcatctgttgaaggctggctctccacacgtcggacagttttggaaact
ttcggagctgggacttagctagcggaagaaggtccagtgagatctggatt
gaacctcaatccttcttgtcctttcctagtcaccaggaggttgaactctc
ccatgagttcactgagcatgtgaccctggcattccacaggcctggagcaa
tggggccaaatgacagtgactgaaactctgaaactgtgagccaaaggaaa
cctctctctttctaatttgctctcctagggagtctggctagcacatgttt
gtaagaattgtgtgagtgtccggcactttcccggccagaggatagggatc
cgcccagcccgggagcgcattgtctgagtgccgcagcagacatctttgtt
cttggaccccgctgagagttattctgcacaggtcagagtgtgatacagag
ctaacagctctgggacgactgagcacagactctatgcagcccctttcagc
cagaattcgcacgtttcagctaggaagggtctgcttggcggagcacttgg
ctgacatccttgcaactcttgtcgactcctctgag
gaattccataatcacaaatcacatgtgaagtgaggtaactgggctggcga
gctggcttagcagctaaagggtgcttgttgctcttgcagagaaccaagtt
cagttcctagcattcgtgtctggtggctcacaaccacctgtaactccagc
tccagctctgactctgtcttctggccttagcaggcatccaccaacacaca
ggcacataaatacaaataaatctttaaaaagaaaggaagaaaatgcacag
cgctggctttgtagtgatttttttgttagcgtgggagctccgcttgctct
cacagactactggctcaaggccattgtctgaactccacatcagagaggta
tatattctgggggggggacctccacaactgatctggggggcaatagcctt
gggttctgacagccattctgtcctagctgtgaggcggctgcccaggtcac
ttcctgaccatctccatgcctttgacttcagtgtgagaagagggtagagg
gggtctccaaaagaggggatggacaggatctccaaaggcctgaaagaatg
caggattttcattttttttcttgaatagtaccacgtactatgccaggcag
gggtacgtggagggcacaggatctctgtctgctgcaccattgtccttttt
cccttagctttccatttgactgttcctgagttatgtcctcaataaaaccc
agggcagagttctgtgagtctttctagtgaggaatcttccagctggagac
tgggagcttgttataaataacaagacactccaattaggaaacacaaagaa
ttttaggagttcagctaagaaaggagacaagctgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_32574098_32575219
seq2: B6Ng01-048H22.b_36_1120

seq1  GAATTCATTCAAGGTCATACAGTTAGAAAATGGCAAAAAGAAAGTTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAAGGTCATACAGTTAGAAAATGGCAAAAAGAAAGTTCAGA  50

seq1  TCCACACTGGGTCTCATAAAAGCCATGCCCTTTACCTGGCTAAGCTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTGGGTCTCATAAAAGCCATGCCCTTTACCTGGCTAAGCTACTT  100

seq1  TAGACTAGACCCTTTAGATGAGGCTTTGGTTAGATAATTTACTATAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAGACCCTTTAGATGAGGCTTTGGTTAGATAATTTACTATAGATG  150

seq1  AGACCAGAATGAATTCAAGGGCTGGAAAGATAGCTCAGTGGTAAGAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGAATGAATTCAAGGGCTGGAAAGATAGCTCAGTGGTAAGAGCAC  200

seq1  ACATACTGCTCTTGAAGAGGACCTGAGTTTGGTGCCCAGTAATCATGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTGCTCTTGAAGAGGACCTGAGTTTGGTGCCCAGTAATCATGTTG  250

seq1  AGGGACTCACAACCATTTCATATCCAGCTCTAGGGGATCAGGAGCCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTCACAACCATTTCATATCCAGCTCTAGGGGATCAGGAGCCTCCT  300

seq1  TTTAGCCTCCAGGAGCACCCACACATATGCACACATGCACAAATAAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTCCAGGAGCACCCACACATATGCACACATGCACAAATAAATCT  350

seq1  TAAAAACAAAGAATTCAGAGTCTTCAACAAGGGCTCAGGGAGCAAAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAAGAATTCAGAGTCTTCAACAAGGGCTCAGGGAGCAAAGTAT  400

seq1  AAGAGGACCTTGACCCTTGAAGTAGAAGTGCAATGGAGTTGCAACAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACCTTGACCCTTGAAGTAGAAGTGCAATGGAGTTGCAACAAAGA  450

seq1  CCTGAAGCCAGAGCTGTACTCCAAGGTTTGGAGGGCAAACATCCCCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCCAGAGCTGTACTCCAAGGTTTGGAGGGCAAACATCCCCAGAA  500

seq1  TTTCATCTGTTGAAGGCTGGCTCTCCACACGTCGGACAGTTTTGGAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTGTTGAAGGCTGGCTCTCCACACGTCGGACAGTTTTGGAAACT  550

seq1  TTCGGAGCTGGGACTTAGCTAGCGGAAGAAGGTCCAGTGAGATCTGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGAGCTGGGACTTAGCTAGCGGAAGAAGGTCCAGTGAGATCTGGATT  600

seq1  GAACCTCAATCCTTCTTGTCC-TTCCTAGTCACCAGGAGGTTGAACTCTC  649
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAACCTCAATCCTTCTTGTCCTTTCCTAGTCACCAGGAGGTTGAACTCTC  650

seq1  CCATGAGTTCACTGAGCATGTGACCCTGGCATTCCACAGGCCTGGAGCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGTTCACTGAGCATGTGACCCTGGCATTCCACAGGCCTGGAGCAA  700

seq1  TGGGGCCAAATGACAGTGACTGAAACTCTGAAACTGTGAGCCAAAGGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCAAATGACAGTGACTGAAACTCTGAAACTGTGAGCCAAAGGAAA  750

seq1  CCTCTCTCTTTCTAATTTGCTCTCCTAGGGAGTCTGGCTAGCACATGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTTTCTAATTTGCTCTCCTAGGGAGTCTGGCTAGCACATGTTT  800

seq1  GTTAAGAATTGTGTGAGTGTCCGGCCACTTTCCCGGCCAGAGGATAGGGA  849
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  G-TAAGAATTGTGTGAGTGTCCGG-CACTTTCCCGGCCAGAGGATAGGGA  848

seq1  TCCGCCCAGCCCGGGAGCGCATTGTCTGAGTGCCGGCAGCAGACATCTTG  899
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  TCCGCCCAGCCCGGGAGCGCATTGTCTGAGTGCC-GCAGCAGACATCTTT  897

seq1  GTTCTGGGACCCCGCTGAGAG-TATTCTGCACAGGTCAGAGTGTGGAATA  948
      ||||| ||||||||||||||| |||||||||||||||||||||||  |||
seq2  GTTCTTGGACCCCGCTGAGAGTTATTCTGCACAGGTCAGAGTGTG--ATA  945

seq1  CAGAAGCTAACAGCTTCTGGGACAGACTGGAGCCACAGAACTTCTAAGGC  998
      ||| |||||||||| |||||||| |||| ||| ||||||   ||| | ||
seq2  CAG-AGCTAACAGC-TCTGGGAC-GACT-GAG-CACAGA--CTCT-ATGC  987

seq1  AGCCCCCTTTTCAGGCCCCAGACATCCGGCCACGTTCCCAGCCAGAGGAT  1048
      ||||||  ||||||   ||||| || ||  ||||||  |||| ||     
seq2  AGCCCC--TTTCAG---CCAGA-ATTCG--CACGTT-TCAGCTAG----G  1024

seq1  AGGGGTCTGCCTGGGCCGGGAGCACTTGGCCTGAGCATCGCTTGCAGACA  1098
      | |||||||| |||    ||||||||||| |||| |||| |||||| || 
seq2  AAGGGTCTGCTTGG---CGGAGCACTTGG-CTGA-CATC-CTTGCA-AC-  1066

seq1  TCTTGGTTTCAGGACTCCTCTGAG  1122
      |||||   ||  ||||||||||||
seq2  TCTTG---TC--GACTCCTCTGAG  1085

seq1: chr6_32697388_32698252
seq2: B6Ng01-048H22.g_70_932 (reverse)

seq1  ACACACACACACACACACACACACACACACAGCCTTGTTCTCCTTTCTTA  50
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  ACACACACACACACACACACACACACACACAG-CTTG-TCTCCTTTCTTA  48

seq1  GCTGAACTCCTAAAATTCTTTGTGTTTCCTAATTGGAGTGTCTTGTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACTCCTAAAATTCTTTGTGTTTCCTAATTGGAGTGTCTTGTTATT  98

seq1  TATAACAAGCTCCCAGTCTCCAGCTGGAAGATTCCTCACTAGAAAGACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAAGCTCCCAGTCTCCAGCTGGAAGATTCCTCACTAGAAAGACTC  148

seq1  ACAGAACTCTGCCCTGGGTTTTATTGAGGACATAACTCAGGAACAGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTCTGCCCTGGGTTTTATTGAGGACATAACTCAGGAACAGTCAA  198

seq1  ATGGAAAGCTAAGGGAAAAAGGACAATGGTGCAGCAGACAGAGATCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGCTAAGGGAAAAAGGACAATGGTGCAGCAGACAGAGATCCTGT  248

seq1  GCCCTCCACGTACCCCTGCCTGGCATAGTACGTGGTACTATTCAAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCACGTACCCCTGCCTGGCATAGTACGTGGTACTATTCAAGAAAA  298

seq1  AAAATGAAAATCCTGCATTCTTTCAGGCCTTTGGAGATCCTGTCCATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAATCCTGCATTCTTTCAGGCCTTTGGAGATCCTGTCCATCCC  348

seq1  CTCTTTTGGAGACCCCCTCTACCCTCTTCTCACACTGAAGTCAAAGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGGAGACCCCCTCTACCCTCTTCTCACACTGAAGTCAAAGGCAT  398

seq1  GGAGATGGTCAGGAAGTGACCTGGGCAGCCGCCTCACAGCTAGGACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGTCAGGAAGTGACCTGGGCAGCCGCCTCACAGCTAGGACAGAA  448

seq1  TGGCTGTCAGAACCCAAGGCTATTGCCCCCCAGATCAGTTGTGGAGGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCAGAACCCAAGGCTATTGCCCCCCAGATCAGTTGTGGAGGTCC  498

seq1  CCCCCCCAGAATATATACCTCTCTGATGTGGAGTTCAGACAATGGCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCAGAATATATACCTCTCTGATGTGGAGTTCAGACAATGGCCTTG  548

seq1  AGCCAGTAGTCTGTGAGAGCAAGCGGAGCTCCCACGCTAACAAAAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTAGTCTGTGAGAGCAAGCGGAGCTCCCACGCTAACAAAAAAATC  598

seq1  ACTACAAAGCCAGCGCTGTGCATTTTCTTCCTTTCTTTTTAAAGATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAAGCCAGCGCTGTGCATTTTCTTCCTTTCTTTTTAAAGATTTAT  648

seq1  TTGTATTTATGTGCCTGTGTGTTGGTGGATGCCTGCTAAGGCCAGAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTATGTGCCTGTGTGTTGGTGGATGCCTGCTAAGGCCAGAAGAC  698

seq1  AGAGTCAGAGCTGGAGCTGGAGTTACAGGTGGTTGTGAGCCACCAGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGAGCTGGAGCTGGAGTTACAGGTGGTTGTGAGCCACCAGACAC  748

seq1  GAATGCTAGGAACTGAACTTGGTTCTCTGCAAGAGCAACAAGCACCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTAGGAACTGAACTTGGTTCTCTGCAAGAGCAACAAGCACCCTTT  798

seq1  AGCTGCTAAGCCAGCTCGCCAGCCCAGTTACCTCACTTCACATGTGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTAAGCCAGCTCGCCAGCCCAGTTACCTCACTTCACATGTGATTT  848

seq1  GTGATTATGGAATTC  865
      |||||||||||||||
seq2  GTGATTATGGAATTC  863