BAC Information

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BAC

Clone NameB6Ng01-048K06
Chromosome6 (Build37)
Map Location 129,975,285 - 129,976,390
singlet/doubletsinglet
Overlap geneKlra6, LOC100038893
Upstream geneKlrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764
Downstream geneLOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048K06.bB6Ng01-048K06.g
ACCDH873141DH873142
length1,0941,193
definitionDH873141|Mus musculus domesticus DNA, BAC clone: B6Ng01-048K06, 5' end.DH873142|Mus musculus domesticus DNA, BAC clone: B6Ng01-048K06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaagaaaaatgttaaaatgttcacctatgggaacataactgcat
atgatgatacagagagcttaaaaagggtagagtctgactaactcacttaa
caatccaaacaccctgacatggactgatcctaatttccatcacaggtaag
aactcattgtagatttctgttaagttagtttatctttctaatggtaatag
caattattgctacgaaatatgaaaaagattaaaactttactgaatcattc
taccattgatacagcctatttgttcaaaatattcagcacataaaaacact
aaaaaatatcattgaaatatgtttaaataattctttcaaagaaaggctca
ggattttaggaataaataaaaatgttgttttagaattatttatatatttt
gataatacataaatattaattgtttctcattttttttatttatgcatgac
tatcagagtttcccaaaaattaattgaagattaattctgcagggaatcca
tggcacataaatatatattgtcttgaagccccaatcagctgagatgtcca
acctcttcaaccagccatattctattcattcttatccatggttggacctg
gcaagtgaattcagcaagataagttcctaatgagtgggataaaacagact
cagaaagaaaaatgtggtataatctatctcatctcagacttctggctcaa
agtcgtcacaaatgctttgtaacttttagtaactgcagcaaacagaaagg
tcataaagggacattgcaagctagggtgtgggagcaacagagagaggtat
agaggatacaatgtgaacttttaatctcaaatcattccatgtacatgcca
agtcaaatatgataaatacgcacatgatgttgcaagaggagctatataaa
aatacattttgcctatatgcagtacacattagctgatgcccatggataca
tctgatagtagacatcaattatttgtaaatagtatttatactgactttac
acttacattatacctgagctgagagcagcgataacaaatgcagatgcaca
tgtgaaagattcttgtctagttttcaattatgaagttttcgaat
gaattctttattggccacagaaggcagcctacccaggttatatagagata
cagctaaggacacccccattgactcttgtgtactttccctatcactaata
tccatcttttctgggagatgtccccatccaccccctatcattttcatatt
tccattcattctcattcccatcaggccatcatctctccctgaagcacagc
aggttctgaaccgtaattgatcccttggactaatttttcactcagttccc
tgcctccatctaccttctatgattattccattcctgattccaattgagac
tcaagcattcttacttatggcattcttttatccagccactgggttctgtg
gagggtatcatttacacttggattttatgtatagtatcaactgataagtg
aagacatactatgaatgtcattttaggatttggttacctcatttaggatg
atattcttaagttccatcaatttgccttcaaaattcatgatgattttttc
atagctaaagagtactccattgcatagatgtagcaaattttctttatcca
tttttcagtgaagggacatctaagatgtttccaatttctgggtgttatga
ataaaactgttatgaacatatctgacaatgagtctttttgggatggtgga
ggatctttgagtatatgccctggagtagtataactgtttcttgagataga
actttgccagtatcctaagaaaccaccaaattgatttcgacaagtgttcc
cccatcatcactgtagtagtgttcccctttcatcatatccttgtcagcat
gtgctatcatttacttttttaacttagccattcctattagggtaagacat
gatctcaggtttgttttgactagcatttccctagttgctaagaactttga
atgtttcttaatgtggcttctggcattcatattttctctgttggagtatc
tctgctagctcacaatttagatgcatagagatctatgcattagtcagaat
gaatatctaaaattccgccttagtaggatattgggagtcagacagcttgt
ttattctgaaccgttatcaccagtcctatccaatctggacgaggactgag
tttttcaatgttattggactgacctcttgcattatggatcattcaagaat
ataagctgattgtatgaccgaagtgaatgtggggtgacacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_129975285_129976390
seq2: B6Ng01-048K06.b_44_1137

seq1  GAATTCTAAGAAAAATGTTAAAATGTTCACCTATGGGAACATAACTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGAAAAATGTTAAAATGTTCACCTATGGGAACATAACTGCAT  50

seq1  ATGATGATACAGAGAGCTTAAAAAGGGTAGAGTCTGACTAACTCACTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATACAGAGAGCTTAAAAAGGGTAGAGTCTGACTAACTCACTTAA  100

seq1  CAATCCAAACACCCTGACATGGACTGATCCTAATTTCCATCACAGGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAAACACCCTGACATGGACTGATCCTAATTTCCATCACAGGTAAG  150

seq1  AACTCATTGTAGATTTCTGTTAAGTTAGTTTATCTTTCTAATGGTAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATTGTAGATTTCTGTTAAGTTAGTTTATCTTTCTAATGGTAATAG  200

seq1  CAATTATTGCTACGAAATATGAAAAAGATTAAAACTTTACTGAATCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATTGCTACGAAATATGAAAAAGATTAAAACTTTACTGAATCATTC  250

seq1  TACCATTGATACAGCCTATTTGTTCAAAATATTCAGCACATAAAAACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTGATACAGCCTATTTGTTCAAAATATTCAGCACATAAAAACACT  300

seq1  AAAAAATATCATTGAAATATGTTTAAATAATTCTTTCAAAGAAAGGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATCATTGAAATATGTTTAAATAATTCTTTCAAAGAAAGGCTCA  350

seq1  GGATTTTAGGAATAAATAAAAATGTTGTTTTAGAATTATTTATATATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTAGGAATAAATAAAAATGTTGTTTTAGAATTATTTATATATTTT  400

seq1  GATAATACATAAATATTAATTGTTTCTCATTTTTTTTATTTATGCATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATACATAAATATTAATTGTTTCTCATTTTTTTTATTTATGCATGAC  450

seq1  TATCAGAGTTTCCCAAAAATTAATTGAAGATTAATTCTGCAGGGAATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAGTTTCCCAAAAATTAATTGAAGATTAATTCTGCAGGGAATCCA  500

seq1  TGGCACATAAATATATATTGTCTTGAAGCCCCAATCAGCTGAGATGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACATAAATATATATTGTCTTGAAGCCCCAATCAGCTGAGATGTCCA  550

seq1  ACCTCTTCAACCAGCCATATTCTATTCATTCTTATCCATGGTTGGACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTCAACCAGCCATATTCTATTCATTCTTATCCATGGTTGGACCTG  600

seq1  GCAAGTGAATTCAGCAAGATAAGTTCCTAATGAGTGGGATAAAACAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGAATTCAGCAAGATAAGTTCCTAATGAGTGGGATAAAACAGACT  650

seq1  CAGAAAGAAAAATGTGGTATAATCTATCTCATCTCAGACTTCTGGCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAAAATGTGGTATAATCTATCTCATCTCAGACTTCTGGCTCAA  700

seq1  AGTCGTCACAAATGCTTTGTAACTTTTAGTAACTGCAGCAAACAGAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTCACAAATGCTTTGTAACTTTTAGTAACTGCAGCAAACAGAAAGG  750

seq1  TCATAAAGGGACATTGCAAGCTAGGGTGTGGGAGCAACAGAGAGAGGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGGGACATTGCAAGCTAGGGTGTGGGAGCAACAGAGAGAGGTAT  800

seq1  AGAGGATACAATGTGAACTTTTAATCTCAAATCATTCCATGTACATGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATACAATGTGAACTTTTAATCTCAAATCATTCCATGTACATGCCA  850

seq1  AGTCAAATATGATAAATACGCACATGATGTTGCAAGAGGAGGCTATATAA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTCAAATATGATAAATACGCACATGATGTTGCAAGAGGA-GCTATATAA  899

seq1  AAATACATTTTGCCTATATGCAGTACACATTAGCTGATGCCCATGGATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAATACATTTTGCCTATATGCAGTACACATTAGCTGATGCCCATGGATA-  948

seq1  CATCTGATAGTAGACATCAATTTATTTGTAAATAGTATTTATAACTGACT  1000
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  CATCTGATAGTAGACATCAA-TTATTTGTAAATAGTATTTAT-ACTGACT  996

seq1  TTACACTTACATTAATACCTGAGCTGAGAGCCAGCAGATAACAAATGCAA  1050
      ||||||||||||| |||||||||||||||| |||| |||||||||||| |
seq2  TTACACTTACATT-ATACCTGAGCTGAGAG-CAGC-GATAACAAATGC-A  1042

seq1  GATGCACATGTGAGAGAATTCTTGTCTAGTTTTTCAATTTATGAAGTTTT  1100
      ||||||||||||| || |||||||||||| ||||||| ||||||||||||
seq2  GATGCACATGTGAAAG-ATTCTTGTCTAG-TTTTCAA-TTATGAAGTTTT  1089

seq1  CAGAAT  1106
      | ||||
seq2  C-GAAT  1094