BAC Information

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BAC

Clone NameB6Ng01-048L07
Chromosome6 (Build37)
Map Location 77,155,423 - 77,273,133
singlet/doubletdoublet
Overlap geneCtnna2, Lrrtm1
Upstream geneLOC100042952, LOC668153, EG668155, LOC100042956
Downstream geneLOC668169, EG434050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048L07.bB6Ng01-048L07.g
ACCDH873188DH873189
length929832
definitionDH873188|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L07, 5' end.DH873189|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,155,423 - 77,156,359)(77,272,294 - 77,273,133)
sequence
gaattctccatctgcctatttatgaatcttttccagtgacgagtaaagca
taaacaacgtgccttctgaagtcctgggagctgttctagcaaattataga
ctctgacggggtggctgtggaaaaccccaatttacaaacatttggttaca
agtatgtgattagcgattaaaaccgggacaggcttctagaacacaacagt
ccagttgtgggtctgatgctcactccaagcacatagaattggtgtctact
tagtgtgagagaagagcagaaatgatgggcaatgttggggaaaatttttt
taattgtttttgtcttttcatgactgaatttataagaattttaaaaattt
gttcttccatataagagttatcagacatgcaatatgcaaatacatttttg
tcatgatatggactatctttttattttctccttggggttatttcatctgg
aaattattcaatactgatgaagtctgacttgcatctagtttgtcttctgt
aaagtacttgtgtgcttgtattgtacttgtattatctgtatacatgcatg
cacaacaggtaagtgggagtcaaaaaataacagtcaggaatcatttttcc
ccagggatggaaaccatgttgagtgcttctggtcagtactctcacccttg
atccatctcacaagctcctctaccacttttgctttacctcggggctacat
agtagcttttactcattttttaaaaatatgcattttgtttgtgtgcccgt
atgtgttgcgaggtaactgagtgcttctgccatgtgtatggagggcagag
gacagcttgggcagtctgttctcttcttccagcataggtgggaggggcca
agctcagatcatgaggcataatagcagagacctttactactgagtaatct
acagtgctttgagttatttgagtttgtgc
gaattccagactgtcagagggcagaacaggggggaaataatgactcaact
gtataaaaaaaaaaggttaaagataataataacaaaaattcaagaaaata
aataaaatgaaaatggtaactgtaaagttaaatgaaaattaaaaaaaaaa
aaaagaactccagatatgtaattgatgggaggtaaatccctctttttaag
tttacccttatctttcctttaaaatgtatttttcctctgtcacagttatg
aaaggagttggatgagtatgtgtatttgaaaaaagtcccattactctttc
tcttaatatgatgtaaatatgatactcaatacttcccttctgacaagatg
gtgaaagtacagttttccacaattaaaatgttctcaaaattttctgtgac
tgctgactgcttatcctaatatttaattcaactgaaacctggagatagca
tcaggtcccagatgctaagagtacatacagttccggaagtcgttctccac
tttaaacatgaaatgagactccacgtttctaaacctgtgtttctaagtga
gtcagttgaaatcaaatgttccatgggtcctttctctacactcagaattt
tgttagaatagcttataagagctcataagcatgtttactttaggttacgg
ttttattataagaccaatacagatgaggataggtaaaaagccaagaggac
cttccggtggccacattaatctccccaattttgtccatttgattgtatgg
ttggattactaattaagcgaagggggctgccttaccattgatagaatcaa
aatcccataggtttattgattggttcccctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_77155423_77156359
seq2: B6Ng01-048L07.b_47_975

seq1  GAATTCTCCATCTGCCTATTTATGAATCTTTTCCAGTGACGAGTAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATCTGCCTATTTATGAATCTTTTCCAGTGACGAGTAAAGCA  50

seq1  TAAACAACGTGCCTTCTGAAGTCCTGGGAGCTGTTCTAGCAAATTATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAACGTGCCTTCTGAAGTCCTGGGAGCTGTTCTAGCAAATTATAGA  100

seq1  CTCTGACGGGGTGGCTGTGGAAAACCCCAATTTACAAACATTTGGTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACGGGGTGGCTGTGGAAAACCCCAATTTACAAACATTTGGTTACA  150

seq1  AGTATGTGATTAGCGATTAAAACCGGGACAGGCTTCTAGAACACAACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTGATTAGCGATTAAAACCGGGACAGGCTTCTAGAACACAACAGT  200

seq1  CCAGTTGTGGGTCTGATGCTCACTCCAAGCACATAGAATTGGTGTCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGTGGGTCTGATGCTCACTCCAAGCACATAGAATTGGTGTCTACT  250

seq1  TAGTGTGAGAGAAGAGCAGAAATGATGGGCAATGTTGGGGAAAATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGAGAGAAGAGCAGAAATGATGGGCAATGTTGGGGAAAATTTTTT  300

seq1  TAATTGTTTTTGTCTTTTCATGACTGAATTTATAAGAATTTTAAAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTTTTGTCTTTTCATGACTGAATTTATAAGAATTTTAAAAATTT  350

seq1  GTTCTTCCATATAAGAGTTATCAGACATGCAATATGCAAATACATTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCCATATAAGAGTTATCAGACATGCAATATGCAAATACATTTTTG  400

seq1  TCATGATATGGACTATCTTTTTATTTTCTCCTTGGGGTTATTTCATCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATATGGACTATCTTTTTATTTTCTCCTTGGGGTTATTTCATCTGG  450

seq1  AAATTATTCAATACTGATGAAGTCTGACTTGCATCTAGTTTGTCTTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTCAATACTGATGAAGTCTGACTTGCATCTAGTTTGTCTTCTGT  500

seq1  AAAGTACTTGTGTGCTTGTATTGTACTTGTATTATCTGTATACATGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTTGTGTGCTTGTATTGTACTTGTATTATCTGTATACATGCATG  550

seq1  CACAACAGGTAAGTGGGAGTCAAAAAATAACAGTCAGGAATCATTTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAGGTAAGTGGGAGTCAAAAAATAACAGTCAGGAATCATTTTTCC  600

seq1  CCAGGGATGGAAACCATGTTGAGTGCTTCTGGTCAGTACTCTCACCCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATGGAAACCATGTTGAGTGCTTCTGGTCAGTACTCTCACCCTTG  650

seq1  ATCCATCTCACAAGCTCCTCTACCACTTTTGCTTTACCTCGGGGCTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTCACAAGCTCCTCTACCACTTTTGCTTTACCTCGGGGCTACAT  700

seq1  AGTAGCTTTTACTCATTTTTTAAAAATATGCATTTTGTTTGTGTGCCCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTTTTACTCATTTTTTAAAAATATGCATTTTGTTTGTGTGCCCGT  750

seq1  ATGTGTTGCGAGGTAACTGAGTGCTTCTGCCATGTGTATGGAGGGCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTGCGAGGTAACTGAGTGCTTCTGCCATGTGTATGGAGGGCAGAG  800

seq1  GACAGCTTGGGCAGTCTGTTCTCTTCTTCCAGCATAAGGGTGGGAGGGGC  850
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  GACAGCTTGGGCAGTCTGTTCTCTTCTTCCAGCATA--GGTGGGAGGGGC  848

seq1  CAAGCTCAGATCATGAGGCATAATAGCAGAGACCTTTACCAACTGAGTAA  900
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  CAAGCTCAGATCATGAGGCATAATAGCAGAGACCTTTA-CTACTGAGTAA  897

seq1  TCCTACAAGGTGCTTTGAGTTAATTTTGAGTTTGTGC  937
      | |||||  |||||||||||||  |||||||||||||
seq2  T-CTACA--GTGCTTTGAGTTA--TTTGAGTTTGTGC  929

seq1: chr6_77272294_77273133
seq2: B6Ng01-048L07.g_69_900 (reverse)

seq1  CTAGGGGAACCAATCAATAGATCATATGTGATTTATGATTGCTATCAATG  50
      ||||||||||||||||||| | | |||| ||||| ||||| |||||||||
seq2  CTAGGGGAACCAATCAATA-AACCTATGGGATTT-TGATT-CTATCAATG  47

seq1  GGTAAAGGCAGACACCATCAGCTAAATTAGTAATACAAACTATACAATCA  100
      |   ||||||| | || || ||| |||||||||| | ||| |||||||||
seq2  G--TAAGGCAGCCCCCTTC-GCTTAATTAGTAAT-CCAACCATACAATCA  93

seq1  AATGGACAAAATTTGAGAAGATTATATGTGGCCACAGGATGGTCCTCTTT  150
      ||||||||||| ||| | |||||| |||||||||| ||| ||||||| ||
seq2  AATGGACAAAA-TTGGGGAGATTA-ATGTGGCCACCGGAAGGTCCTC-TT  140

seq1  GGCTTTTTACCTATCCTCATCTGTATT-GTCTTATAATAAAACAGTAACC  199
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  GGCTTTTTACCTATCCTCATCTGTATTGGTCTTATAATAAAACCGTAACC  190

seq1  TAAAAGTAAACATGCTTACTGAGCTCTTATAAGCTATTCTAACAAATTAC  249
      | |||||||||||||||| ||||||||||||||||||||||||||| | |
seq2  T-AAAGTAAACATGCTTA-TGAGCTCTTATAAGCTATTCTAACAAAATTC  238

seq1  TGAGTGTAGAG-AAGGACCATGGGAACATTTGATTTCAACTGACTCACTT  298
      ||||||||||| |||||||   ||||||||||||||||||||||||||||
seq2  TGAGTGTAGAGAAAGGACCCATGGAACATTTGATTTCAACTGACTCACTT  288

seq1  AGAAACACAGG-TTAG-AACGTGGAGTCTCATTTCATGTTTAAAGTGGAG  346
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  AGAAACACAGGTTTAGAAACGTGGAGTCTCATTTCATGTTTAAAGTGGAG  338

seq1  AACGACTTCCGGAACTGTATGTACTCTTAGCATCTGGGACCTGATGCTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACTTCCGGAACTGTATGTACTCTTAGCATCTGGGACCTGATGCTAT  388

seq1  CTCCAGGTTTCAGTTGAATTAAATATTAGGATAAGCAGTCAGCAGTCACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTTTCAGTTGAATTAAATATTAGGATAAGCAGTCAGCAGTCACA  438

seq1  GAAAATTTTGAGAACATTTTAATTGTGGAAAACTGTACTTTCACCATCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTTGAGAACATTTTAATTGTGGAAAACTGTACTTTCACCATCTT  488

seq1  GTCAGAAGGGAAGTATTGAGTATCATATTTACATCATATTAAGAGAAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAGGGAAGTATTGAGTATCATATTTACATCATATTAAGAGAAAGA  538

seq1  GTAATGGGACTTTTTTCAAATACACATACTCATCCAACTCCTTTCATAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGGACTTTTTTCAAATACACATACTCATCCAACTCCTTTCATAAC  588

seq1  TGTGACAGAGGAAAAATACATTTTAAAGGAAAGATAAGGGTAAACTTAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGAGGAAAAATACATTTTAAAGGAAAGATAAGGGTAAACTTAAA  638

seq1  AAGAGGGATTTACCTCCCATCAATTACATATCTGGAGTTCTTTTTTTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGATTTACCTCCCATCAATTACATATCTGGAGTTCTTTTTTTTTT  688

seq1  TTTTAATTTTCATTTAACTTTACAGTTACCATTTTCATTTTATTTATTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTCATTTAACTTTACAGTTACCATTTTCATTTTATTTATTTT  738

seq1  CTTGAATTTTTGTTATTATTATCTTTAACCTTTTTTTTTTATACAGTTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTTTTGTTATTATTATCTTTAACCTTTTTTTTTTATACAGTTGA  788

seq1  GTCATTATTTCCCCCCTGTTCTGCCCTCTGACAGTCTGGAATTC  840
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTATTTCCCCCCTGTTCTGCCCTCTGACAGTCTGGAATTC  832