BAC Information

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BAC

Clone NameB6Ng01-049D24
Chromosome6 (Build37)
Map Location 15,202,269 - 15,203,045
singlet/doubletsinglet
Overlap geneFoxp2
Upstream geneLOC100040513, LOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049D24.b
ACCDH873567
length776
definitionDH873567|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D24, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtacagcctacactgcagctaaaaatggattctgtaagacggt
cattgagatgtgtaattgtacgggtgttgtacttcagtgatagggagctt
tcttagcatacacttcagctcttttgccatcaacacacacacacacacac
acacacacacattgggcaggggaatgaatgaaagacttgaaggacaaaca
cgaaaacacacacacaaagggaggagggagggagagagagagagagagag
agagagacagagagagacagagacagagacagagacggagacagagagac
agacagagacagagagacagagggagacagagagacagagagacagagag
acagagacaaagacacacagagacacacacacacacagagagagagagag
agagagagacagacagacagacagacagagagacagacagagagagacag
acagacagacagacagagagagacagagagagatagagagacgcacagag
agaagtatcattcacctaacactgtggtaggaagatcaaagtttgagacc
aacctaggatacatagtgagactgtctcaaaaaaattcaagaactttagg
taacgattctatgaagaacatatttttcagcataatttgctttattgtct
gcattacttagaggatctggtgtgggagttcacgttgttctcctgaatct
ccagcctgaattgctgcacattttggatcaactcatctattacatgaagg
agaactgtctttgttgtacttataaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15202269_15203045
seq2: B6Ng01-049D24.b_44_819 (reverse)

seq1  TTTATCAGTACAACAAAGACAGTTCTTCCTCTTGTTATAGATGAGTTGAT  50
      ||||| |||||||||||||||||||| | || ||| ||||||||||||||
seq2  TTTATAAGTACAACAAAGACAGTTCTCCTTCATGTAATAGATGAGTTGAT  50

seq1  CCAAAAATGTGCAACAATTCAGGCTGGAGATTCAGGAGAACAACGTGAAC  100
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CC-AAAATGTGCAGCAATTCAGGCTGGAGATTCAGGAGAACAACGTGAAC  99

seq1  TCCCACACCAGATCCTCTAAGTAATGCAGACAATAAAGCAAATTATGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACACCAGATCCTCTAAGTAATGCAGACAATAAAGCAAATTATGCTG  149

seq1  AAAATATTGTTCTTCATAGAATCGTTACCTAAAGTTCTTGAATTTTTTTG  200
      ||||   |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATGTTCTTCATAGAATCGTTACCTAAAGTTCTTGAATTTTTTTG  199

seq1  AGACAGTCTCACTATGTATCCTAGGTTGGTCTCAAACTTTGATCTTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTCTCACTATGTATCCTAGGTTGGTCTCAAACTTTGATCTTCCTA  249

seq1  CCACAGTGTTAGGTGAATGATACTTCTCTCTGTGCGTCTCTCTATCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGTTAGGTGAATGATACTTCTCTCTGTGCGTCTCTCTATCTCTC  299

seq1  TCTGTCTCTCTCTGTCTGTCTGTCTGTCTGTCTCTCTCTGTCTGTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTCTGTCTGTCTGTCTGTCTGTCTCTCTCTGTCTGTCTCTC  349

seq1  TGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTG  399

seq1  TGTGTCTCTGTGTGTCTTTGTCTCTGTCTCTCTGTCTCTCTGTCTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCTGTGTGTCTTTGTCTCTGTCTCTCTGTCTCTCTGTCTCTCTG  449

seq1  TCTCCCTCTGTCTCTCTGTCTCTGTCTGTCTCTCTGTCTCCGTCTCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTGTCTCTCTGTCTCTGTCTGTCTCTCTGTCTCCGTCTCTGTC  499

seq1  TCTGTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCCCTC  549

seq1  CCTCCTCCCTTTGTGTGTGTGTTTTCGTGTTTGTCCTTCAAGTCTTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCCTTTGTGTGTGTGTTTTCGTGTTTGTCCTTCAAGTCTTTCAT  599

seq1  TCATTCCCCTGCCCAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCCCTGCCCAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGATG  649

seq1  GCAAAAGAGCTGAAGTGTATGCTAAGAAAGCTCCCTATCACTGAAGTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGAGCTGAAGTGTATGCTAAGAAAGCTCCCTATCACTGAAGTACA  699

seq1  ACACCCGTACAATTACACATCTCAATGACCGTCTTACAGAATCCATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCGTACAATTACACATCTCAATGACCGTCTTACAGAATCCATTTTT  749

seq1  AGCTGCAGTGTAGGCTGTACTGAATTC  777
      |||||||||||||||||||||||||||
seq2  AGCTGCAGTGTAGGCTGTACTGAATTC  776