BAC Information

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BAC

Clone NameB6Ng01-049K05
Chromosome6 (Build37)
Map Location 100,828,871 - 101,003,349
singlet/doubletdoublet
Overlap geneEG545870
Upstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2
Downstream geneLOC100043321, Pdzrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049K05.bB6Ng01-049K05.g
ACCDH873843DH873844
length201858
definitionDH873843|Mus musculus domesticus DNA, BAC clone: B6Ng01-049K05, 5' end.DH873844|Mus musculus domesticus DNA, BAC clone: B6Ng01-049K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,003,149 - 101,003,349)(100,828,871 - 100,829,725)
sequence
gaattcaaggccagcctaggtgataagaagttaaaggctgttctgagctc
tacaagaccacgtctcaacaaccacaaaggtttggggtgtactagccata
gagactttgctaaggtatgtaaggtcctgggttctaaatctgctactaag
gaaaaaaagaggaatagaacagaaaggaagggaaggaaagggggagggga
g
gaattcattaaaaccttgcttaaaaactctttcttcatccgtatgcactc
tgaatgtccctcagtgtacggagcacaggctgagaaaggacgggtggggt
tgccaggtcactcttgcaggggaaaggatccaggactggtcctgggttgt
gcctgcctggggctctctgatgggctgtggagttttccctgcctgcagcc
tcggcagacaccgctgccgcagagggcagcttcccaggtctctgagcggc
agactgttgggagaaaactggggctcctgccccggtccctttggccatga
cttcccttccatgtatacctggtccttgctatttccgcagtggcagaaca
gactttgtcgacaaagagggaccttttgtttgtgcattgtcaagtggggg
tgaccgtgtcctcgaagattcatctgaggatgaagcatgcagggactagg
aacccgtggtgctgcgtgtggctacccacacttgcattttgctttagcta
agactgagcatggtagacaagaatctgctctcagggagaggaagccccgc
tgtgcctgaagctctgctctcataggtgtacagaatacaaagcagtgttt
cttacacagtggcattctgggagctacggcaggaggatggaaagtttgag
gctagtctgggctacacagtgagtttcagaccatccctggggccacgaga
ccccaaagtcactgggggtgtgtgtgttggattacttggtgcccacagcc
agaattcctttgtgactcttgccactgccatacccttgtaagctgtccat
ctttcgttctcagtgtaaaatgcttgctccgggtggggagtgacatccca
gtcggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_101003149_101003349
seq2: B6Ng01-049K05.b_41_241 (reverse)

seq1  CTCCCCTCCCCCTTTCCTTCCCTTCCTTTCTGTTCTATTCCTCTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCCCCCTTTCCTTCCCTTCCTTTCTGTTCTATTCCTCTTTTTTT  50

seq1  CCTTAGTAGCAGATTTAGAACCCAGGACCTTACATACCTTAGCAAAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTAGCAGATTTAGAACCCAGGACCTTACATACCTTAGCAAAGTCT  100

seq1  CTATGGCTAGTACACCCCAAACCTTTGTGGTTGTTGAGACGTGGTCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCTAGTACACCCCAAACCTTTGTGGTTGTTGAGACGTGGTCTTGT  150

seq1  AGAGCTCAGAACAGCCTTTAACTTCTTATCACCTAGGCTGGCCTTGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCAGAACAGCCTTTAACTTCTTATCACCTAGGCTGGCCTTGAATT  200

seq1  C  201
      |
seq2  C  201

seq1: chr6_100828871_100829725
seq2: B6Ng01-049K05.g_68_925

seq1  GAATTCATTAAAACCTTGCTTAAAAACTCTTTCTTCATCCGTATGCACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAACCTTGCTTAAAAACTCTTTCTTCATCCGTATGCACTC  50

seq1  TGAATGTCCCTCAGTGTACGGAGCACAGGCTGAGAAAGGACGGGTGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCCCTCAGTGTACGGAGCACAGGCTGAGAAAGGACGGGTGGGGT  100

seq1  TGCCAGGTCACTCTTGCAGGGGAAAGGATCCAGGACTGGTCCTGGGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGTCACTCTTGCAGGGGAAAGGATCCAGGACTGGTCCTGGGTTGT  150

seq1  GCCTGCCTGGGGCTCTCTGATGGGCTGTGGAGTTTTCCCTGCCTGCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTGGGGCTCTCTGATGGGCTGTGGAGTTTTCCCTGCCTGCAGCC  200

seq1  TCGGCAGACACCGCTGCCGCAGAGGGCAGCTTCCCAGGTCTCTGAGCGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCAGACACCGCTGCCGCAGAGGGCAGCTTCCCAGGTCTCTGAGCGGC  250

seq1  AGACTGTTGGGAGAAAACTGGGGCTCCTGCCCCGGTCCCTTTGGCCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTGGGAGAAAACTGGGGCTCCTGCCCCGGTCCCTTTGGCCATGA  300

seq1  CTTCCCTTCCATGTATACCTGGTCCTTGCTATTTCCGCAGTGGCAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTCCATGTATACCTGGTCCTTGCTATTTCCGCAGTGGCAGAACA  350

seq1  GACTTTGTCGACAAAGAGGGACCTTTTGTTTGTGCATTGTCAAGTGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTCGACAAAGAGGGACCTTTTGTTTGTGCATTGTCAAGTGGGGG  400

seq1  TGACCGTGTCCTCGAAGATTCATCTGAGGATGAAGCATGCAGGGACTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGTGTCCTCGAAGATTCATCTGAGGATGAAGCATGCAGGGACTAGG  450

seq1  AACCCGTGGTGCTGCGTGTGGCTACCCACACTTGCATTTTGCTTTAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGTGGTGCTGCGTGTGGCTACCCACACTTGCATTTTGCTTTAGCTA  500

seq1  AGACTGAGCATGGTAGACAAGAATCTGCTCTCAGGGAGAGGAAGCCCCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGCATGGTAGACAAGAATCTGCTCTCAGGGAGAGGAAGCCCCGC  550

seq1  TGTGCCTGAAGCTCTGCTCTCATAGGTGTACAGAATACAAAGCAGTG-TT  599
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGCCTGAAGCTCTGCTCTCATAGGTGTACAGAATACAAAGCAGTGTTT  600

seq1  CTTACACAGTGGCATTCT-GGAGCTACGGCAGGAGGATGGAAAGTTTGAG  648
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTACACAGTGGCATTCTGGGAGCTACGGCAGGAGGATGGAAAGTTTGAG  650

seq1  GCTAGTCTGGGCTACACAGTGAGTTTCAGACCATCC--TGGGCCACGAGA  696
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  GCTAGTCTGGGCTACACAGTGAGTTTCAGACCATCCCTGGGGCCACGAGA  700

seq1  -CCCAAAGTCACT-GGGGTGTGTGTGTGGGA-TACTTGTGCCCCACAGCC  743
       |||||||||||| ||||||||||||| ||| ||||||   |||||||||
seq2  CCCCAAAGTCACTGGGGGTGTGTGTGTTGGATTACTTGGTGCCCACAGCC  750

seq1  AGAGTTCCTTTGTGACTC-TGCCACTGCCATTACCTTGTAAGCTGTCCCA  792
      ||| |||||||||||||| ||||||||||||  ||||||||||||| |||
seq2  AGAATTCCTTTGTGACTCTTGCCACTGCCATACCCTTGTAAGCTGT-CCA  799

seq1  TACTTCGTTTCCCCAGTGAAGAATGCTTGCTCCGGGTGGGGAGTGACACA  842
      |  ||||||  | ||||| | |||||||||||||||||||||||||||  
seq2  TCTTTCGTT--CTCAGTGTAAAATGCTTGCTCCGGGTGGGGAGTGACA-T  846

seq1  CCCAGGTCGGTCA  855
      |||| ||||||||
seq2  CCCA-GTCGGTCA  858