BAC Information

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BAC

Clone NameB6Ng01-049K19
Chromosome3 (Build37)6 (Build37)
Map Location 11,211,763 - 11,212,636128,970,880 - 128,971,917
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564, LOC383826, EG667978
Downstream geneLOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049K19.bB6Ng01-049K19.g
ACCDH873868DH873869
length1,0121,032
definitionDH873868|Mus musculus domesticus DNA, BAC clone: B6Ng01-049K19, 5' end.DH873869|Mus musculus domesticus DNA, BAC clone: B6Ng01-049K19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,211,763 - 11,212,636)(128,970,880 - 128,971,917)
sequence
gaattcctactgaattccaagtttgtcagctacaaggtctttctaggact
ttggaacactggtgaaggcttagctatgtcagaattcaatcataaaaggc
acttataataagataatactaaaagagagcacgtggatccatacaccaga
ctaattcagggatagggtaagaatatacggtttatgagaacgccaaagtt
ccaggaggtgagtttccatgaaactctttgcctcgtgagtgctcccaggc
ctctcggcctgccaagcaaacttcactgtagtgtgcatagcattctctct
ctttcttatatttctgctgaagttccggaatgtcccgcctcgttgtagct
acagatctcaggagtgttctaaagatgagtggaaacaacaatttactaat
aaaataatgccaataataatagcaagtaggaatatatattgaacccaatc
caggggattcaatgcacttaggttatcttttaaatctctggccaattcaa
caatgtcccaagtgtccaagtgactattgctaatatctgaaatttctgac
tttctagcattaatatatgctatgtcctgccctattgttaagactactac
ttctaagacattaacctttgcctccaattctttacatggctctgtggtat
attactaatgagccacggcctcttggcatgtacctctgtctagattgata
tgactccaaaatctgggtgtccgtcttagactgtctggccctcatagcaa
accttacttccagatcagaccaaaagccacaatatgtacttagaatgctt
cttgaatgaagattaataacttccacctgcgctgttggagtcggggatgc
acgcctgctgcagtcaggctgaaggcgctgactgacctgcttggaaaaca
aagttgaaaaagtgaaaggcaacagtacaaagcttcttttgggggagtcc
aggtactccattccatttgcaattagcaacgaccaagctagactaagctc
ctgtggtggggg
gaattctttatcccatacttccatccccttgagtttctctcttgtttttc
tccacttcagagaagtggccagtggctcttgacttttccccctttcctat
cctatacaagttaaagaagtcttagctattggagcagaaagattgtgcct
atcttaggtgttccttcaagaaatgtggatcttacccatcactggtatgt
gaatctttgtatttctgtcctgtcttaggttgatatacctttgagagaat
cttatctgtctttgactaccagtctctgtaatgggatgtgttaacctatt
aggttaatgttttgagccgtacaagatggaatctgtatagatgtttaaat
atgtacactgggcaaacttatccttaaggggtaacaagtgtaatcttata
agtattcaaggcaggtactgaaatgactaatgcgtcaacgaagactagga
aggcaatctctttcttacttgtgttacccatttagaggcagcttttgcag
catggaattataggggtttagcatctcttaaattattaagtttatttaaa
gcattttgaattttatctaacctttgtaagcctttatctgtatgttaggg
ttctgaaacataaactgggagcataacaaatgaaggttgatgaagtacca
taacagaaatttcttttttttaaattacgtattttcctcaattacatttc
caatgctatcccaaaagtcccccatgctctcccccccactcccctaccca
ccgattcccactttttggccctggcgttcccctgtactggggcatataaa
gtttgcatgtccatgggcctctcattccagtgatggccaataggcatctt
ttgatacatatgcagatagagatagagctttggggtactggttagttcat
aatgttgtgcacctacagggttgcagatcctttttagctccttggatact
tttctttactcctccattgggggccctgtgatccactcatagctgactct
gagcaacccctattggtttgttaggccccggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_11211763_11212636
seq2: B6Ng01-049K19.b_180_1055

seq1  ATCCATACACCAGACTAATGCGGGGATAGGGTAAGAATATACGGGTTATG  50
      ||||||||||||||||||| | |||||||||||||||||||||| |||||
seq2  ATCCATACACCAGACTAATTCAGGGATAGGGTAAGAATATACGGTTTATG  50

seq1  AAAACACCAAAATTCCAGGAGGTGAGTTTCAGTGAAACTCTTTGCCTCGT  100
      | ||| ||||| ||||||||||||||||||  ||||||||||||||||||
seq2  AGAACGCCAAAGTTCCAGGAGGTGAGTTTCCATGAAACTCTTTGCCTCGT  100

seq1  GAGTGTTCCCAGGCCTCTCGGCCTGCCAAGCAAACTTCACTGGAGTGTGC  150
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGTGCTCCCAGGCCTCTCGGCCTGCCAAGCAAACTTCACTGTAGTGTGC  150

seq1  ATAGCATT-TC-CCCATTCTTATATTTCTGCCAAAGTTATGGAATGTCCT  198
      |||||||| || | | |||||||||||||||  |||||  ||||||||| 
seq2  ATAGCATTCTCTCTCTTTCTTATATTTCTGCTGAAGTTCCGGAATGTCCC  200

seq1  GCCTCATTGCAGCTATAGATCTCAGAAGTGCTCTAAAGATGAGTGGAAAC  248
      ||||| ||| ||||| ||||||||| |||| |||||||||||||||||  
seq2  GCCTCGTTGTAGCTACAGATCTCAGGAGTGTTCTAAAGATGAGTGGAA--  248

seq1  ACAATGATTTACTAATAAAATAGTGCCAATAATAATAGCAAGTGGGATAA  298
      ||||  |||||||||||||||| |||||||||||||||||||| |||  |
seq2  ACAACAATTTACTAATAAAATAATGCCAATAATAATAGCAAGTAGGAATA  298

seq1  TATATTGAAACC-ATCCAGGGGATTCAATGCACTTAGGTTATC-TTTAAA  346
      ||||||||| || |||||||||||||||||||||||||||||| ||||||
seq2  TATATTGAACCCAATCCAGGGGATTCAATGCACTTAGGTTATCTTTTAAA  348

seq1  TCTCTGGCCAATTCATCAGTGTTCCAAGTGTCCAAGTGACTATTGCTAAT  396
      ||||||||||||||| || ||| |||||||||||||||||||||||||||
seq2  TCTCTGGCCAATTCAACAATGTCCCAAGTGTCCAAGTGACTATTGCTAAT  398

seq1  ATCTGAAATTTCTGCCTTTCTACCCTTAATATATGCTATGTCCTGCCCTA  446
      |||||||||||||| ||||||| | |||||||||||||||||||||||||
seq2  ATCTGAAATTTCTGACTTTCTAGCATTAATATATGCTATGTCCTGCCCTA  448

seq1  TTGTTAAGATTACTACTTCTAAGACATTAACCTTTGCCTCTAATTCTTTA  496
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TTGTTAAGACTACTACTTCTAAGACATTAACCTTTGCCTCCAATTCTTTA  498

seq1  CATGGCTCTGTGGTGTATTATTAACAAGCCATGGCCTCTTGGCATGTACC  546
      |||||||||||||| ||||| |||  ||||| ||||||||||||||||||
seq2  CATGGCTCTGTGGTATATTACTAATGAGCCACGGCCTCTTGGCATGTACC  548

seq1  TCTGTCTAGATTGATATGATTCTGAGATTTGGGTGTCTGTCTTAGGACTG  596
      ||||||||||||||||||| ||  | || |||||||| |||||| |||||
seq2  TCTGTCTAGATTGATATGACTCCAAAATCTGGGTGTCCGTCTTA-GACTG  597

seq1  TCTGGCCCTCATAGCAAACCTTATTCCCAAATCAGACCAAAAGCCACAAT  646
      ||||||||||||||||||||||| | ||| ||||||||||||||||||||
seq2  TCTGGCCCTCATAGCAAACCTTACTTCCAGATCAGACCAAAAGCCACAAT  647

seq1  ATGTAC-TAGAATGCTTCTTGAATGAAGATTAGTAACTGCCACCTGCACT  695
      |||||| ||||||||||||||||||||||||| ||||| |||||||| ||
seq2  ATGTACTTAGAATGCTTCTTGAATGAAGATTAATAACTTCCACCTGCGCT  697

seq1  GTTGGAGGCGGGGATGCACACCTGCTGCAGTCAGGCTGAAGGGTGTTGAC  745
      ||||||| ||||||||||| |||||||||||||||||||| || | ||||
seq2  GTTGGAGTCGGGGATGCACGCCTGCTGCAGTCAGGCTGAA-GGCGCTGAC  746

seq1  TGACCTGCTTGAAAAACAAAGT---CACAGTGAAAAGC-ACAGTGCAAAA  791
      ||||||||||| ||||||||||    | ||||||| || ||||| | |||
seq2  TGACCTGCTTGGAAAACAAAGTTGAAAAAGTGAAAGGCAACAGTAC-AAA  795

seq1  GCTTCTTTTGGGGAAGTCCAGGGACTCCATT-CACTTGCAAATTAGCAAA  840
      ||||||||||||| |||||||| |||||||| || |||| ||||||||| 
seq2  GCTTCTTTTGGGGGAGTCCAGGTACTCCATTCCATTTGC-AATTAGCAAC  844

seq1  GACCAGGCTAGACTTAGAGCTCCTGGTGTGGGGG  874
      ||||| ||||||||   ||||||||  |||||||
seq2  GACCAAGCTAGACT--AAGCTCCTGTGGTGGGGG  876

seq1: chr6_128970880_128971917
seq2: B6Ng01-049K19.g_67_1098

seq1  GAATTCTTTATCCCATACTTCCATCCCCTTGAGTTTCTCTCTTGTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATCCCATACTTCCATCCCCTTGAGTTTCTCTCTTGTTTTTC  50

seq1  TCCACTTCAGAGAAGTGGCCAGTGGCTCTTGACTTTTCCCCCTTTCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCAGAGAAGTGGCCAGTGGCTCTTGACTTTTCCCCCTTTCCTAT  100

seq1  CCTATACAAGTTAAAGAAGTCTTAGCTATTGGAGCAGAAAGATTGTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACAAGTTAAAGAAGTCTTAGCTATTGGAGCAGAAAGATTGTGCCT  150

seq1  ATCTTAGGTGTTCCTTCAAGAAATGTGGATCTTACCCATCACTGGTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGGTGTTCCTTCAAGAAATGTGGATCTTACCCATCACTGGTATGT  200

seq1  GAATCTTTGTATTTCTGTCCTGTCTTAGGTTGATATACCTTTGAGAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTGTATTTCTGTCCTGTCTTAGGTTGATATACCTTTGAGAGAAT  250

seq1  CTTATCTGTCTTTGACTACCAGTCTCTGTAATGGGATGTGTTAACCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGTCTTTGACTACCAGTCTCTGTAATGGGATGTGTTAACCTATT  300

seq1  AGGTTAATGTTTTGAGCCGTACAAGATGGAATCTGTATAGATGTTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAATGTTTTGAGCCGTACAAGATGGAATCTGTATAGATGTTTAAAT  350

seq1  ATGTACACTGGGCAAACTTATCCTTAAGGGGTAACAAGTGTAATCTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACTGGGCAAACTTATCCTTAAGGGGTAACAAGTGTAATCTTATA  400

seq1  AGTATTCAAGGCAGGTACTGAAATGACTAATGCGTCAACGAAGACTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCAAGGCAGGTACTGAAATGACTAATGCGTCAACGAAGACTAGGA  450

seq1  AGGCAATCTCTTTCTTACTTGTGTTACCCATTTAGAGGCAGCTTTTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATCTCTTTCTTACTTGTGTTACCCATTTAGAGGCAGCTTTTGCAG  500

seq1  CATGGAATTATAGGGGTTTAGCATCTCTTAAATTATTAAGTTTATTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATTATAGGGGTTTAGCATCTCTTAAATTATTAAGTTTATTTAAA  550

seq1  GCATTTTGAATTTTATCTAACCTTTGTAAGCCTTTATCTGTATGTTAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTGAATTTTATCTAACCTTTGTAAGCCTTTATCTGTATGTTAGGG  600

seq1  TTCTGAAACATAAACTGGGAGCATAACAAATGAAGGTTGATGAAGTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAACATAAACTGGGAGCATAACAAATGAAGGTTGATGAAGTACCA  650

seq1  TAACAGAAATTTCTTTTTTTTAAATTACGTATTTTCCTCAATTACATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAAATTTCTTTTTTTTAAATTACGTATTTTCCTCAATTACATTTC  700

seq1  CAATGCTATCCCAAAAGTCCCCCATGCTCTCCCCCCCACTCCCCTACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTATCCCAAAAGTCCCCCATGCTCTCCCCCCCACTCCCCTACCCA  750

seq1  CCGATTCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATTCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAA  800

seq1  GTTTGCATGTCCAATGGGCCTCTCATTCCAGTGATGGCCAAATAGGCCAT  850
      |||||||||||| |||||||||||||||||||||||||| |||||| |||
seq2  GTTTGCATGTCC-ATGGGCCTCTCATTCCAGTGATGGCC-AATAGG-CAT  847

seq1  CTTTTGATACATATGCAGATAGAGATAAGAGCTTTGGGGTACTGGTTAGT  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTTTGATACATATGCAGATAGAGAT-AGAGCTTTGGGGTACTGGTTAGT  896

seq1  TCATAATGTTGTTGCACCTACAGGGTTGCAGAT-CTTTTTAGCTCCTTGG  949
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TCATAATGTTG-TGCACCTACAGGGTTGCAGATCCTTTTTAGCTCCTTGG  945

seq1  ATAC-TTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGC  998
      |||| ||||| || ||||||||||||||||||||||||||| |  |||||
seq2  ATACTTTTCTTTA-CTCCTCCATTGGGGGCCCTGTGATCCA-CTCATAGC  993

seq1  TGACTCTGAGCATCCACTTATGTGTTTGCTAGGCCCCGGC  1038
      |||||||||||| || | |||  ||||| |||||||||||
seq2  TGACTCTGAGCAACC-CCTATTGGTTTGTTAGGCCCCGGC  1032