BAC Information

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BAC

Clone NameB6Ng01-050A20
Chromosome6 (Build37)
Map Location 105,214,596 - 105,215,506
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn6, LOC384470
Downstream geneLOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050A20.g
ACCDH874117
length985
definitionDH874117|Mus musculus domesticus DNA, BAC clone: B6Ng01-050A20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaagacattcggggctacctatcgagatcctgtctcgtcttcat
gacaaatgagggcgtgaaaagagtctggaggacttgggggtgggggaggg
gggttgtagaggaagcagatgtgaagttgtggctgtagacattatcaggt
tacaaccaatgctgtttgggcctttcagacgtcagaacagtgatgaaaat
aaagctccttttttgattgtttgtttataaagtgctggaggtacatcata
ttttgtagccacacatcatgaacttgagtatttgagtaaatatagcaagt
taaagtaaaccatattttctcattaattagggtaatggagtttctaaagc
catatctcagggtgggtttcagctttttccttttagtttatttgaatgta
aatcagataatacctgtctttagacatgattgaagatgtttctatcagtg
ccttgaaatacttgataatatcaaatattttcttgactgcttcactcctt
tagacacctttaaaatctaacacacaatttcaagggagggatcaagctgt
gttcattgctttcccattactatgctttcagatttataaacaaacattaa
aaactggactcttttctacataatgttcttttcagtatttcggttgattg
tgcaatcgatacatcagctctgtggcagtttctgacctagaatatgttgt
tatgttaatcaatcgacttgttgagacatcaaagtaaatcccccttgaca
tcacaaagctaagtgagaatgccagcagaagggagctgtgttttcgatca
cttaaatcaaaatggccgtagagaagaacctttcagaggtcacttggaaa
gattgttaattgacagtttctgactggtcagacttgaaatctgcacttct
ctttgtcaactgagtttactgcacatagattattagacataactaacata
ttaataattttgtgagaaatagaggtatggacttt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_105214596_105215506
seq2: B6Ng01-050A20.g_157_1048 (reverse)

seq1  AAAGTCCATTAACTTCTATCTCCTCACCAAAATTTTATTAATATGTTAGT  50
      |||||||||  || ||||| | ||||| |||   ||||||||||||||||
seq2  AAAGTCCAT--ACCTCTAT-TTCTCACAAAA---TTATTAATATGTTAGT  44

seq1  TATTGTCTTATAATTCTATTGTGCAGTAAACTCAGTTTGACAAAGAGGAA  100
      || ||||| |||| |||| |||||||||||||||| |||||||||| |||
seq2  TA-TGTCTAATAA-TCTA-TGTGCAGTAAACTCAG-TTGACAAAGA-GAA  89

seq1  GTGCAGATTTTCAAAGTACTGACCAAGTCAGAAAACTGTCATATAACAAT  150
      ||||||||||   |||| |||||| |||||| |||||||||  |||||||
seq2  GTGCAGATTT--CAAGT-CTGACC-AGTCAG-AAACTGTCAATTAACAAT  134

seq1  CTTTTCCAAGTGACCTCTGAAAGGTTCTTCTCTACGGCCA-TTTGATTTA  199
      | |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  C-TTTCCAAGTGACCTCTGAAAGGTTCTTCTCTACGGCCATTTTGATTTA  183

seq1  AGTGATCGAAAACACAGCTCCCTTCTGCTGGCATTCTCACTTAGCTTTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCGAAAACACAGCTCCCTTCTGCTGGCATTCTCACTTAGCTTTGT  233

seq1  GATTGTCAAGGGGGATTTACTTTGAATGTCTCAACAAGTCGATTGATTAA  299
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GA-TGTCAAGGGGGATTTACTTTG-ATGTCTCAACAAGTCGATTGATTAA  281

seq1  CATAACAACATATTCTAGGTCAGAAACTGCCACAGAGCCTGATGTATCGA  349
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATAACAACATATTCTAGGTCAGAAACTGCCACAGAG-CTGATGTATCGA  330

seq1  TTGCACAATCAACCGAAATACTGAAAAGAACATTATGTAGAAAAGAGTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAATCAACCGAAATACTGAAAAGAACATTATGTAGAAAAGAGTCC  380

seq1  AGTTTTTAATGTTTGTTTATAAATCTGAAAGCATAGTAATGGGAAAGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTAATGTTTGTTTATAAATCTGAAAGCATAGTAATGGGAAAGCAA  430

seq1  TGAACACAGCTTGATCCCTCCCTTGAAATTGTGTGTTAGATTTTAAAGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAGCTTGATCCCTCCCTTGAAATTGTGTGTTAGATTTTAAAGGT  480

seq1  GTCTAAAGGAGTGAAGCAGTCAAGAAAATATTTGATATTATCAAGTATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAGGAGTGAAGCAGTCAAGAAAATATTTGATATTATCAAGTATTT  530

seq1  CAAGGCACTGATAGAAACATCTTCAATCATGTCTAAAGACAGGTATTATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCACTGATAGAAACATCTTCAATCATGTCTAAAGACAGGTATTATC  580

seq1  TGATTTACATTCAAATAAACTAAAAGGAAAAAGCTGAAACCCACCCTGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTACATTCAAATAAACTAAAAGGAAAAAGCTGAAACCCACCCTGAG  630

seq1  ATATGGCTTTAGAAACTCCATTACCCTAATTAATGAGAAAATATGGTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCTTTAGAAACTCCATTACCCTAATTAATGAGAAAATATGGTTTA  680

seq1  CTTTAACTTGCTATATTTACTCAAATACTCAAGTTCATGATGTGTGGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTTGCTATATTTACTCAAATACTCAAGTTCATGATGTGTGGCTA  730

seq1  CAAAATATGATGTACCTCCAGCACTTTATAAACAAACAATCAAAAAAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATGATGTACCTCCAGCACTTTATAAACAAACAATCAAAAAAGGA  780

seq1  GCTTTATTTTCATCACTGTTCTGACGTCTGAAAGGCCCAAACAGCATTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTTTCATCACTGTTCTGACGTCTGAAAGGCCCAAACAGCATTGG  830

seq1  TTGTAACCTGATAATGTCTACAGCCACAACTTCACATCTGCTTCCTCTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACCTGATAATGTCTACAGCCACAACTTCACATCTGCTTCCTCTAC  880

seq1  AACCCCCATCCC  911
      ||||||| ||||
seq2  AACCCCCCTCCC  892