BAC Information

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BAC

Clone NameB6Ng01-050M20
Chromosome6 (Build37)
Map Location 116,511,696 - 116,665,325
singlet/doubletdoublet
Overlap geneOlfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik
Upstream geneTsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214
Downstream geneLOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050M20.bB6Ng01-050M20.g
ACCDH874639DH874640
length1,128807
definitionDH874639|Mus musculus domesticus DNA, BAC clone: B6Ng01-050M20, 5' end.DH874640|Mus musculus domesticus DNA, BAC clone: B6Ng01-050M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,664,171 - 116,665,325)(116,511,696 - 116,512,342)
sequence
gaattcagattagagtgtgaccttgccaaggtcacacaaggggttggcgt
agcagtattcctggattttcccagcagctttccctgcatccctagtctaa
tggaaaggccagctctagcttccttcaagagcccaatgcatttacatgta
ggtaatgatcacagggcccccaaggtgaccctaaatagatctccatgatg
agagtgtgagttactgttgactactgctggtccaagtctactgagttcct
tctatgcaatgagttttaaatgcatacattgtaccctttaggctaccaga
aatcttacaactagaactcagccatactccattcaccctgggcaactacc
tccctcctgccaggaagctgcttaaggtgcacacatctatctttctaatg
gattagtgggtctaccttacctcgacctaaggactgcctttcattccaca
cccttccgcacatgtgcacaccaaggcatattgcacatcttaaccacaac
cttcatctctgctaagaagctgctgttaatactgaagatgagcctcctcc
tgcttggctgtgatacaagatccaagctaaaaatagaccacagttgcttt
ctaaaggccaagctttcaaagaatatcccttgggttcaccagagtgctgg
ggcaagtgggaagccagagaggggctccagtgctctccagtgctctccgg
ttcagatctcgggtttctctcgacatcactggcctttgggcctctgtcca
gtacatgaggtttacagattccttgtccccttaagcatcttttgttgaaa
tcctctgttgcaaagtctgggacccattataggaacattgctgctacaag
ggaaatgagccttaaactgagactggtactttgcagaaacccagggcagt
ggggcatatgagtacccctgtatatagacagcagatgtctcatgctagca
ggaatgtgaagaaggcttcagagtggcatctgcagggaatgtgcagctct
gggaggtggcagctcttgcccagaactcttttgggaacctggaacaggct
caggctgtcaggtctcaggtcttcatccaacagatttctatgcctgtgcg
gcgcagcctcagaaggctgctcacatgc
gaattcaaaacaaaaacataggaaaagacaaatattagtcatgttcgatc
tttttataacatctcaggttttatagatattttatgtctgtgttttttag
attcaagttttctgagataattgactgagctatctatttttctacttttt
cttcaagacctgaaaaatacccccctctctacctctaatttttatatttg
ctgccctggtttttcatttctaggtttctttcagtctggaattgctttag
ttattcttttttgtttgtttgtttgtttgtttagttatactttcatgttg
aggttcttttgttccaacaatttgtgtttttatagtcttcattagggcac
ttgattctttttaaggtccttgaggcttatccatgattgctattttgaag
tccttgccttgcatgtcagctgaattgcttttctcatggcttattgaaat
agggttgcctgctagaggaagcatagtgtcttggctatctgtctatggtt
ttgtgctgagatctaggcatctggagttatgatgcttcaagcatttcttg
gtgcatatatctggtctcaggtttttggattggtaatccattgttcaaat
gctttttccaactctgtaacttcaccaactgtggtggctatgggatccct
agtagaaaaaagctctgtggtggtggagagtcacaatgaaatagagatgg
acttgaaggagcagctgaaagggacaatggtgaaaagtatgaggatatgg
accctgagtttgtacaaagggccaagtcctaggggtggaagtgggttagg
aggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_116664171_116665325
seq2: B6Ng01-050M20.b_47_1174 (reverse)

seq1  GCATAGTGAGCAGCCTTCTCTGCAGGCCCTGCTGCAGCCACAGGCATAGG  50
      |||| ||||||||||||||    |||  |||| || | ||||||||||| 
seq2  GCAT-GTGAGCAGCCTTCT---GAGG--CTGC-GCCG-CACAGGCATAGA  42

seq1  AAACTGTTGTGAATTGAGAGCACCTGAGA-CTGACAGCCCTGAGCCTGTT  99
      || |||||| ||  ||| || |||||||| ||||||| |||||||||| |
seq2  AATCTGTTG-GA--TGA-AG-ACCTGAGACCTGACAG-CCTGAGCCTG-T  85

seq1  TCCAGGGTCCACAAAAGAAGTTTCTGGGCAGAGGCTGCCACCTCCCAGGA  149
      |||||| ||| |||||||   |||||||||   |||||||||||||| ||
seq2  TCCAGGTTCC-CAAAAGA--GTTCTGGGCAAGAGCTGCCACCTCCCA-GA  131

seq1  GCTGCACATTCCCTGCAGATGCCACTCTGGAAGCCCTTCTTCACATTCCT  199
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  GCTGCACATTCCCTGCAGATGCCACTCT-GAAG-CCTTCTTCACATTCCT  179

seq1  GCCTAGCATTGAGACAATTCTGCTGTCTATATACAAGGGGTACCTCATAT  249
      | |||||| |||||||  |||||||||||||||| ||||||| |||||||
seq2  G-CTAGCA-TGAGACA--TCTGCTGTCTATATAC-AGGGGTA-CTCATAT  223

seq1  GCCCCACTGCCCTGGGTTTCTGCAAAGTACCAGTCTCAGTTTTAAGGCTC  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCCCCACTGCCCTGGGTTTCTGCAAAGTACCAGTCTCAG-TTTAAGGCTC  272

seq1  ATTTCCCTTGTAGCAGCAATGTTCCTATAATGGGTCCCAGACTTTGCAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTTGTAGCAGCAATGTTCCTATAATGGGTCCCAGACTTTGCAAC  322

seq1  AGAGGATTTCAACAAAAGATGCTTAAGGGGACAAGGAATCTGTAAACCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATTTCAACAAAAGATGCTTAAGGGGACAAGGAATCTGTAAACCTC  372

seq1  ATGTACTGGACAGAGGCCCAAAGGCCAGTGATGTCGAGAGAAACCCGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTGGACAGAGGCCCAAAGGCCAGTGATGTCGAGAGAAACCCGAGA  422

seq1  TCTGAACCGGAGAGCACTGGAGAGCACTGGAGCCCCTCTCTGGCTTCCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACCGGAGAGCACTGGAGAGCACTGGAGCCCCTCTCTGGCTTCCCA  472

seq1  CTTGCCCCAGCACTCTGGTGAACCCAAGGGATATTCTTTGAAAGCTTGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCCAGCACTCTGGTGAACCCAAGGGATATTCTTTGAAAGCTTGGC  522

seq1  CTTTAGAAAGCAACTGTGGTCTATTTTTAGCTTGGATCTTGTATCACAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAAGCAACTGTGGTCTATTTTTAGCTTGGATCTTGTATCACAGC  572

seq1  CAAGCAGGAGGAGGCTCATCTTCAGTATTAACAGCAGCTTCTTAGCAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGAGGAGGCTCATCTTCAGTATTAACAGCAGCTTCTTAGCAGAG  622

seq1  ATGAAGGTTGTGGTTAAGATGTGCAATATGCCTTGGTGTGCACATGTGCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTTGTGGTTAAGATGTGCAATATGCCTTGGTGTGCACATGTGCG  672

seq1  GAAGGGTGTGGAATGAAAGGCAGTCCTTAGGTCGAGGTAAGGTAGACCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTGTGGAATGAAAGGCAGTCCTTAGGTCGAGGTAAGGTAGACCCA  722

seq1  CTAATCCATTAGAAAGATAGATGTGTGCACCTTAAGCAGCTTCCTGGCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCATTAGAAAGATAGATGTGTGCACCTTAAGCAGCTTCCTGGCAG  772

seq1  GAGGGAGGTAGTTGCCCAGGGTGAATGGAGTATGGCTGAGTTCTAGTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGTAGTTGCCCAGGGTGAATGGAGTATGGCTGAGTTCTAGTTGT  822

seq1  AAGATTTCTGGTAGCCTAAAGGGTACAATGTATGCATTTAAAACTCATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCTGGTAGCCTAAAGGGTACAATGTATGCATTTAAAACTCATTG  872

seq1  CATAGAAGGAACTCAGTAGACTTGGACCAGCAGTAGTCAACAGTAACTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGGAACTCAGTAGACTTGGACCAGCAGTAGTCAACAGTAACTCA  922

seq1  CACTCTCATCATGGAGATCTATTTAGGGTCACCTTGGGGGCCCTGTGATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCATCATGGAGATCTATTTAGGGTCACCTTGGGGGCCCTGTGATC  972

seq1  ATTACCTACATGTAAATGCATTGGGCTCTTGAAGGAAGCTAGAGCTGGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTACATGTAAATGCATTGGGCTCTTGAAGGAAGCTAGAGCTGGCC  1022

seq1  TTTCCATTAGACTAGGGATGCAGGGAAAGCTGCTGGGAAAATCCAGGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTAGACTAGGGATGCAGGGAAAGCTGCTGGGAAAATCCAGGAAT  1072

seq1  ACTGCTACGCCAACCCCTTGTGTGACCTTGGCAAGGTCACACTCTAATCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTACGCCAACCCCTTGTGTGACCTTGGCAAGGTCACACTCTAATCT  1122

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1128

seq1: chr6_116511696_116512342
seq2: B6Ng01-050M20.g_229_873

seq1  AAAAATACCCCCCTCTCTACCTCTAATTTTTATATTTGCTGCCCTGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACCCCCCTCTCTACCTCTAATTTTTATATTTGCTGCCCTGGTTT  50

seq1  TTCATTTCTAGGTTTCTTTCAGTCTGGAATTGCTTTAGTTATTCTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTAGGTTTCTTTCAGTCTGGAATTGCTTTAGTTATTCTTTTTT  100

seq1  GTTTGTTTGTTTGTTTGTTTAGTTATACTTTCATGTTGAGGTTCTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTGTTTAGTTATACTTTCATGTTGAGGTTCTTTTGT  150

seq1  TCCAACAATTTGTGTTTTTATAGTCTTCATTAGGGCACTTGATTCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAATTTGTGTTTTTATAGTCTTCATTAGGGCACTTGATTCTTTTT  200

seq1  AAGGTCCTTGAGGCTTATCCATGATTGCTATTTTGAAGTCCTTGCCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCTTGAGGCTTATCCATGATTGCTATTTTGAAGTCCTTGCCTTGC  250

seq1  ATGTCAGCTGAATTGCTTTTCTCATGGCTTATTGAAATAGGGTTGCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGCTGAATTGCTTTTCTCATGGCTTATTGAAATAGGGTTGCCTGC  300

seq1  TAGAGGAAGCATAGTGTCTTGGCTATCTGTCTATGGTTTTGTGCTGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAGCATAGTGTCTTGGCTATCTGTCTATGGTTTTGTGCTGAGAT  350

seq1  CTAGGCATCTGGAGTTATGATGCTTCAAGCATTTCTTGGTGCATATATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCATCTGGAGTTATGATGCTTCAAGCATTTCTTGGTGCATATATCT  400

seq1  GGTCTCAGGTTTTTGGATTGGTAATCCATTGTTCAAATGCTTTTTCCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAGGTTTTTGGATTGGTAATCCATTGTTCAAATGCTTTTTCCAAC  450

seq1  TCTGTAACTTCACCAACTGTGGTGGCTATGGGATCCCTAGTAGAAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAACTTCACCAACTGTGGTGGCTATGGGATCCCTAGTAGAAAAAAG  500

seq1  CTCTGTGGTGGTGGAGAGTCACAATGAAATAGAGATGGACTTGAAGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGTGGTGGAGAGTCACAATGAAATAGAGATGGACTTGAAGGAGC  550

seq1  AGCTGAAAGGGACAATGGTGAAAAGGTATGAGGATATGGACCCTGAGTTT  600
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCTGAAAGGGACAATGGTGAAAA-GTATGAGGATATGGACCCTGAGTTT  599

seq1  GTACCAAGGGGCCAAGTCCTAGGGGTGGAAGTGGGTTAGGAGGAGGG  647
      ||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  GTA-CAAAGGGCCAAGTCCTAGGGGTGGAAGTGGGTTAGGAGGAGGG  645