BAC Information

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BAC

Clone NameB6Ng01-051H21
Chromosome6 (Build37)
Map Location 11,727,062 - 11,861,675
singlet/doubletdoublet
Overlap geneNdufa4
Upstream geneLOC100040285, LOC667650, AA545190
Downstream genePhf14, LOC100040844, EG625347, LOC435879, Thsd7a, LOC667735
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051H21.bB6Ng01-051H21.g
ACCDH875117DH875118
length6241,073
definitionDH875117|Mus musculus domesticus DNA, BAC clone: B6Ng01-051H21, 5' end.DH875118|Mus musculus domesticus DNA, BAC clone: B6Ng01-051H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,727,062 - 11,727,685)(11,860,591 - 11,861,675)
sequence
gaattcagtaaagaagcctttgacataagtgggcatcctttgatccactg
agcatctgagcagaacatagaagtgggagagggacataattgattttata
tttcaggtagaatattaatcatctgctgccctcacacactgccacactat
cagcttatgtcaccacctgccctccttcccttcacacagtatcaggatgg
atacatcgatggacaaataaatagaaagatattttaatgtttctatttct
ctcaagaatagcgtgtagtgcagttatcatctatagtggcaataaaatgc
agtatatttaatgtttgaatatgatgataatacctaaatattaagcatgt
gtgattaatttaatttctcagagaattataaacaatagaaaccacaagtt
aatatactttctcattttttataactttagtaaataaaatataatacttc
tacttatcatatcaccctgttagtctatatcacagaatcctgataattat
catgacgctagcagaaggtatgtaccaggtatagggggagggggatcaga
aggaatagagagagggaaaactggtcaggatattttttagtgaataatga
atagcaaaaaatgtgatattagat
gaattccttcctgttggctacttcatcctccagccttgtgagcttgtatc
ttgggagcttctagggtctgtctgttttctctaggattggagaatggggc
tgaacttgagttctagggatgaaatctcaggtactcatacttgaaaggta
agcatcttttatggtgacatctcctcagccttctttttatattattttta
tttttaatggtgcatgcttcattgaccaaatcaagttacctgtctgagct
tgacactagccaaaggactaaatataatttttccaagaaaaagcattaaa
tatgtgaacaaaggccaatataaaacaattgtcattttttttttaaatta
caatcatttcggactctccaaaatgactctcttcaagacactcaggtctc
cactatctgtgctcaaagtgccttcagcactgggagaacctaaaactcca
tctgtcggtattcctaactcagtctaagatctacaaatgatgctgtagat
gcttcttctcttattatcttttctctttctgtcattcctgacttagtttt
tcttttcttatttttcccctccttttatcgtctttaaaatttcttttcag
tgctacggatggaactaaaattcttacacacactaagcaagtgatagaga
actgagttatagtcccagtccaatactgtgatttctaggtggtttgtttt
tctaggattgtttttgatcggtctgaaggtctgtgaattaacaccacctt
taactgccctacaacagacacacataattttctacagtagaacagagact
tgatactggatactttatagtgaagaggatgaggactgtatacagacatt
gacatgcttgttggataatacgttgccacagagttacctagtctttaact
agagcatgattttgtcagtgttctcctgctcttggcttgaatccatgtaa
gagttcataagcacagcatattttttctgcctgaatctcctctagagact
ggagaaatgtaatgttcaatcatatccaaacagtccagttttaaacctaa
gctaagagtcttgcaatatgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_11727062_11727685
seq2: B6Ng01-051H21.b_31_654

seq1  GAATTCAGTAAAGAAGCCTTTGACATAAGTGGGCATCCTTTGATCCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAAGAAGCCTTTGACATAAGTGGGCATCCTTTGATCCACTG  50

seq1  AGCATCTGAGCAGAACATAGAAGTGGGAGAGGGACATAATTGATTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGAGCAGAACATAGAAGTGGGAGAGGGACATAATTGATTTTATA  100

seq1  TTTCAGGTAGAATATTAATCATCTGCTGCCCTCACACACTGCCACACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTAGAATATTAATCATCTGCTGCCCTCACACACTGCCACACTAT  150

seq1  CAGCTTATGTCACCACCTGCCCTCCTTCCCTTCACACAGTATCAGGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTATGTCACCACCTGCCCTCCTTCCCTTCACACAGTATCAGGATGG  200

seq1  ATACATCGATGGACAAATAAATAGAAAGATATTTTAATGTTTCTATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCGATGGACAAATAAATAGAAAGATATTTTAATGTTTCTATTTCT  250

seq1  CTCAAGAATAGCGTGTAGTGCAGTTATCATCTATAGTGGCAATAAAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAATAGCGTGTAGTGCAGTTATCATCTATAGTGGCAATAAAATGC  300

seq1  AGTATATTTAATGTTTGAATATGATGATAATACCTAAATATTAAGCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTTAATGTTTGAATATGATGATAATACCTAAATATTAAGCATGT  350

seq1  GTGATTAATTTAATTTCTCAGAGAATTATAAACAATAGAAACCACAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAATTTAATTTCTCAGAGAATTATAAACAATAGAAACCACAAGTT  400

seq1  AATATACTTTCTCATTTTTTATAACTTTAGTAAATAAAATATAATACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACTTTCTCATTTTTTATAACTTTAGTAAATAAAATATAATACTTC  450

seq1  TACTTATCATATCACCCTGTTAGTCTATATCACAGAATCCTGATAATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATCATATCACCCTGTTAGTCTATATCACAGAATCCTGATAATTAT  500

seq1  CATGACGCTAGCAGAAGGTATGTACCAGGTATAGGGGGAGGGGGATCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACGCTAGCAGAAGGTATGTACCAGGTATAGGGGGAGGGGGATCAGA  550

seq1  AGGAATAGAGAGAGGGAAAACTGGTCAGGATA-TCATGAGAGAAGAATGA  599
      |||||||||||||||||||||||||||||||| |  | || ||| |||||
seq2  AGGAATAGAGAGAGGGAAAACTGGTCAGGATATTTTTTAGTGAATAATGA  600

seq1  ATAAGCTAAAAATGTGATATTAGAT  624
      || ||| ||||||||||||||||||
seq2  AT-AGCAAAAAATGTGATATTAGAT  624

seq1: chr6_11860591_11861675
seq2: B6Ng01-051H21.g_64_1136 (reverse)

seq1  CTACATATTGCCAAAGGAACTCTTAGCTTTGGGTTTTAAAAACTGTGACT  50
      |||||||||||  |||  ||||||||||| ||   || ||||||| ||||
seq2  CTACATATTGC--AAG--ACTCTTAGCTTAGG---TTTAAAACTG-GACT  42

seq1  GTTTGAGATATGAATTGACATTACATTTCTCCAGTCCTCTAGAGGAAAGA  100
      ||||| ||||||| |  |||||||||||||||||| |||||||||  |||
seq2  GTTTG-GATATGATTGAACATTACATTTCTCCAGT-CTCTAGAGG--AGA  88

seq1  ATCAGGCAG-AAAAATATGCTGTGCTTATGAACTCCTTACATGGATTCAA  149
       |||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  TTCAGGCAGAAAAAATATGCTGTGCTTATGAACT-CTTACATGGATTCAA  137

seq1  GCCAAGAAGCAAGGAAGAACACTGACAAAATCATGCTCTAGTTAAAGACT  199
      |||||| ||||  | |||||||||||||||||||||||||||||||||||
seq2  GCCAAG-AGCA--GGAGAACACTGACAAAATCATGCTCTAGTTAAAGACT  184

seq1  AGGTAACTCTGTGGCAACGTA-TATCCAAC-AGCATGTCAATGTCTGTAT  247
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  AGGTAACTCTGTGGCAACGTATTATCCAACAAGCATGTCAATGTCTGTAT  234

seq1  ACAGTCCTCATCCTCTTCACTAT-AAGTATCCAGTATCAAGTCTCTGTTC  296
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACAGTCCTCATCCTCTTCACTATAAAGTATCCAGTATCAAGTCTCTGTTC  284

seq1  TACTGTAGAAAATTATGTGTGTCTGTTGTAGGGCAGTTAAAGGTGGTGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGAAAATTATGTGTGTCTGTTGTAGGGCAGTTAAAGGTGGTGTT  334

seq1  AATTCACAGACCTTCAGACCGATCAAAAACAATCCTAGAAAAACAAACCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACAGACCTTCAGACCGATCAAAAACAATCCTAGAAAAACAAACCA  384

seq1  CCTAGAAATCACAGTATTGGACTGGGACTATAACTCAGTTCTCTATCACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAATCACAGTATTGGACTGGGACTATAACTCAGTTCTCTATCACT  434

seq1  TGCTTAGTGTGTGTAAGAATTTTAGTTCCATCCGTAGCACTGAAAAGAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGTGTGTGTAAGAATTTTAGTTCCATCCGTAGCACTGAAAAGAAA  484

seq1  TTTTAAAGACGATAAAAGGAGGGGAAAAATAAGAAAAGAAAAACTAAGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGACGATAAAAGGAGGGGAAAAATAAGAAAAGAAAAACTAAGTC  534

seq1  AGGAATGACAGAAAGAGAAAAGATAATAAGAGAAGAAGCATCTACAGCAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGACAGAAAGAGAAAAGATAATAAGAGAAGAAGCATCTACAGCAT  584

seq1  CATTTGTAGATCTTAGACTGAGTTAGGAATACCGACAGATGGAGTTTTAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAGATCTTAGACTGAGTTAGGAATACCGACAGATGGAGTTTTAG  634

seq1  GTTCTCCCAGTGCTGAAGGCACTTTGAGCACAGATAGTGGAGACCTGAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCCAGTGCTGAAGGCACTTTGAGCACAGATAGTGGAGACCTGAGT  684

seq1  GTCTTGAAGAGAGTCATTTTGGAGAGTCCGAAATGATTGTAATTTAAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAAGAGAGTCATTTTGGAGAGTCCGAAATGATTGTAATTTAAAAA  734

seq1  AAAAATGACAATTGTTTTATATTGGCCTTTGTTCACATATTTAATGCTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGACAATTGTTTTATATTGGCCTTTGTTCACATATTTAATGCTTT  784

seq1  TTCTTGGAAAAATTATATTTAGTCCTTTGGCTAGTGTCAAGCTCAGACAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGAAAAATTATATTTAGTCCTTTGGCTAGTGTCAAGCTCAGACAG  834

seq1  GTAACTTGATTTGGTCAATGAAGCATGCACCATTAAAAATAAAAATAATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTGATTTGGTCAATGAAGCATGCACCATTAAAAATAAAAATAATA  884

seq1  TAAAAAGAAGGCTGAGGAGATGTCACCATAAAAGATGCTTACCTTTCAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAAGGCTGAGGAGATGTCACCATAAAAGATGCTTACCTTTCAAG  934

seq1  TATGAGTACCTGAGATTTCATCCCTAGAACTCAAGTTCAGCCCCATTCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTACCTGAGATTTCATCCCTAGAACTCAAGTTCAGCCCCATTCTC  984

seq1  CAATCCTAGAGAAAACAGACAGACCCTAGAAGCTCCCAAGATACAAGCTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTAGAGAAAACAGACAGACCCTAGAAGCTCCCAAGATACAAGCTC  1034

seq1  ACAAGGCTGGAGGATGAAGTAGCCAACAGGAAGGAATTC  1085
      |||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTGGAGGATGAAGTAGCCAACAGGAAGGAATTC  1073