BAC Information

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BAC

Clone NameB6Ng01-051M19
Chromosome6 (Build37)
Map Location 145,056,079 - 145,232,061
singlet/doubletdoublet
Overlap geneLrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866
Upstream geneSox5, 4933425H06Rik, EG665149, Bcat1
Downstream geneLOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn, Itpr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051M19.bB6Ng01-051M19.g
ACCDH875335DH875336
length404581
definitionDH875335|Mus musculus domesticus DNA, BAC clone: B6Ng01-051M19, 5' end.DH875336|Mus musculus domesticus DNA, BAC clone: B6Ng01-051M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,056,079 - 145,056,482)(145,231,481 - 145,232,061)
sequence
gaattcctccacccccaccactaccttcccttctccttgttctgccctgc
tcactccagcccatgggtttttggtttttttgctttgttttatttttgtt
tttaaattgatttatttgtttcttattacagatggttgtgagccaccatg
tggttgctgggatttgagctcatgacctcccaaagagccatcagtgctct
taactgctgagccatctcaccagccctcaagagaatttttaaatatcatt
agtaatcacagaattactaattctgtgagatgtaactagaagtcactaca
gctgcctctacatatattttaagttttgctagagtctggatggcaaggtc
aaaggaactgtgagttatgcagcaagaccttggatgagtgggtgggtggg
tgga
gaattctcctaggtggctaatgctgttgtgtgtcacatgggcatcaggaa
tctgtgtccttcctgtcagggtgttcaaatctttattattattattatta
ttattattattattatttttttttaattttaatttttatttttattattt
gttataggaaatcattacaatcctgtttcataattctttgctgaaaactg
taaattaagtattttttcacccatctttggtgtgcttactgattgtcttt
tgataattttgtgagatgttaaattttgccatgtttaaattatacaaagt
ttctttcctgcttattgctttctccatcttaccaagggaatcttgcctgt
tcccaagtcacaaagctactctgttttcccctgaaggtttggcttctgcc
ctagtttcctgtctgctgtgataaaacactctgacccaaagtaatttaag
ggaagggagattttatttgacttatacagccagattaccatccgtcactg
aggggtttcacatggacattcaagttagaacttgaagcagaagccttaaa
ggaatgggctgttagcttgctcacgcttcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_145056079_145056482
seq2: B6Ng01-051M19.b_43_446

seq1  GAATTCCTCCACCCCCACCACTACCTTCCCTTCTCCTTGTTCTGCCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCACCCCCACCACTACCTTCCCTTCTCCTTGTTCTGCCCTGC  50

seq1  TCACTCCAGCCCATGGGTTTTTGGTTTTTTTGCTTTGTTTTATTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCAGCCCATGGGTTTTTGGTTTTTTTGCTTTGTTTTATTTTTGTT  100

seq1  TTTAAATTGATTTATTTGTTTCTTATTACAGATGGTTGTGAGCCACCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTGATTTATTTGTTTCTTATTACAGATGGTTGTGAGCCACCATG  150

seq1  TGGTTGCTGGGATTTGAGCTCATGACCTCCCAAAGAGCCATCAGTGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTGGGATTTGAGCTCATGACCTCCCAAAGAGCCATCAGTGCTCT  200

seq1  TAACTGCTGAGCCATCTCACCAGCCCTCAAGAGAATTTTTAAATATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTGAGCCATCTCACCAGCCCTCAAGAGAATTTTTAAATATCATT  250

seq1  AGTAATCACAGAATTACTAATTCTGTGAGATGTAACTAGAAGTCACTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCACAGAATTACTAATTCTGTGAGATGTAACTAGAAGTCACTACA  300

seq1  GCTGCCTCTACATATATTTTAAGTTTTGCTAGAGTCTGGATGGCAAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCTACATATATTTTAAGTTTTGCTAGAGTCTGGATGGCAAGGTC  350

seq1  AAAGGAACTGTGAGTTATGCAGCAAGACCTTGGATGAGTGGGTGGGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACTGTGAGTTATGCAGCAAGACCTTGGATGAGTGGGTGGGTGGG  400

seq1  TGGA  404
      ||||
seq2  TGGA  404

seq1: chr6_145231481_145232061
seq2: B6Ng01-051M19.g_69_649 (reverse)

seq1  GCGAAGCGTGAGCAAGCTAACAGCCCATTCCTTTAAGGCTTCTGCTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAGCGTGAGCAAGCTAACAGCCCATTCCTTTAAGGCTTCTGCTTCAA  50

seq1  GTTCTAACTTGAATGTCCATGTGAAACCCCTCAGTGACGGATGGTAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAACTTGAATGTCCATGTGAAACCCCTCAGTGACGGATGGTAATCT  100

seq1  GGCTGTATAAGTCAAATAAAATCTCCCTTCCCTTAAATTACTTTGGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTATAAGTCAAATAAAATCTCCCTTCCCTTAAATTACTTTGGGTCA  150

seq1  GAGTGTTTTATCACAGCAGACAGGAAACTAGGGCAGAAGCCAAACCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTTATCACAGCAGACAGGAAACTAGGGCAGAAGCCAAACCTTCA  200

seq1  GGGGAAAACAGAGTAGCTTTGTGACTTGGGAACAGGCAAGATTCCCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAACAGAGTAGCTTTGTGACTTGGGAACAGGCAAGATTCCCTTGG  250

seq1  TAAGATGGAGAAAGCAATAAGCAGGAAAGAAACTTTGTATAATTTAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGAGAAAGCAATAAGCAGGAAAGAAACTTTGTATAATTTAAACA  300

seq1  TGGCAAAATTTAACATCTCACAAAATTATCAAAAGACAATCAGTAAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAATTTAACATCTCACAAAATTATCAAAAGACAATCAGTAAGCAC  350

seq1  ACCAAAGATGGGTGAAAAAATACTTAATTTACAGTTTTCAGCAAAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGATGGGTGAAAAAATACTTAATTTACAGTTTTCAGCAAAGAATT  400

seq1  ATGAAACAGGATTGTAATGATTTCCTATAACAAATAATAAAAATAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAGGATTGTAATGATTTCCTATAACAAATAATAAAAATAAAAAT  450

seq1  TAAAATTAAAAAAAAATAATAATAATAATAATAATAATAATAATAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAAAAAAAAATAATAATAATAATAATAATAATAATAATAATAAA  500

seq1  GATTTGAACACCCTGACAGGAAGGACACAGATTCCTGATGCCCATGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAACACCCTGACAGGAAGGACACAGATTCCTGATGCCCATGTGAC  550

seq1  ACACAACAGCATTAGCCACCTAGGAGAATTC  581
      |||||||||||||||||||||||||||||||
seq2  ACACAACAGCATTAGCCACCTAGGAGAATTC  581