BAC Information

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BAC

Clone NameB6Ng01-051N11
Chromosome1 (Build37)6 (Build37)
Map Location 168,789,341 - 168,789,9324,960,006 - 4,960,469
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895
Downstream geneLOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051N11.bB6Ng01-051N11.g
ACCDH875366DH875367
length58876
definitionDH875366|Mus musculus domesticus DNA, BAC clone: B6Ng01-051N11, 5' end.DH875367|Mus musculus domesticus DNA, BAC clone: B6Ng01-051N11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(168,789,341 - 168,789,932)(4,960,006 - 4,960,469)
sequence
gaattccaccacagaaatgagaaaaataaaaggtataggagacaaaccca
tattctgaaagctaaggaaatgttattgcaaaaagggaagctgcccctta
acgaggaacaccccctatccaccacaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaactaagaacagacagaaagctagaattttatataatactggagtta
atgtgggagatatctattcatgagtcttattggagtcatatggaataatg
gtggtgactgaatcttgggacacaaaccacgcgaagacaatgtagtcctc
tgtgtttaggaaaccctgggtcacaaagtaatacagaagacttttcaata
tttgcaacatccagggagctcgcgctgagcaaaaattcaaaattgtcatt
tttgttcaagagaatcctcattaatccctgggatagcttcaaaagaactg
gcaaccctcctgaaggggggagaaaaagcccataacacatttcctaccag
gttcttttagtgatgtcatcgcaaactggttaaaattctgtgaaagtggc
tgttccaaggcaattggtctggagttcaatctttcaaa
attcaccagtactagaaccatgtgtgtatgtgtgtgtgtgtgtgtgtgtg
tttgtgtgtgtgtgtgtgtgtgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_168789341_168789932
seq2: B6Ng01-051N11.b_50_637

seq1  GAATTCCACCACAGAAATGAGAAAAATAAAAGGTATAGGAGACAAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCACAGAAATGAGAAAAATAAAAGGTATAGGAGACAAACCCA  50

seq1  TATTCTGAAAGCTAAGGAAATGTTATTGCAAAAAGGGAAGCTGCCCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGAAAGCTAAGGAAATGTTATTGCAAAAAGGGAAGCTGCCCCTTA  100

seq1  ACGAGGAACACCCCCTATCCACCACAAAAAAAAAAAAAAAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGAACACCCCCTATCCACCACAAAAAAAAAAAAAAAAAAAAAAAAA  150

seq1  AAAAACTAAGAACAGACAGAAAGCTAGAATTTTATATAATACTGGAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAAGAACAGACAGAAAGCTAGAATTTTATATAATACTGGAGTTA  200

seq1  ATGTGGGAGATATCTATTCATGAGTCTTATTGGAGTCATATGGAATAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGAGATATCTATTCATGAGTCTTATTGGAGTCATATGGAATAATG  250

seq1  GTGGTGACTGAATCTTGGGACACAAACCACGCGAAGACAATGTAGTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGACTGAATCTTGGGACACAAACCACGCGAAGACAATGTAGTCCTC  300

seq1  TGTGTTTAGGAAACCCTGGGTCACAAAGTAATACAGAAGACTTTTCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAGGAAACCCTGGGTCACAAAGTAATACAGAAGACTTTTCAATA  350

seq1  TTTGCAACATCCAGGGAGCTCGCGCTGAGCAAAAATTCAAAATTGTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAACATCCAGGGAGCTCGCGCTGAGCAAAAATTCAAAATTGTCATT  400

seq1  TTTGTTCAAGAGAAGTCTCATTAATCCCT-GGATAGC-TCAGAAGAGCTG  448
      ||||||||||||||  ||||||||||||| ||||||| ||| |||| |||
seq2  TTTGTTCAAGAGAATCCTCATTAATCCCTGGGATAGCTTCAAAAGAACTG  450

seq1  GCAACCCTCCTGA--GGGGGAGAGAAAGCCCATAACACATTTCCTA-CAG  495
      |||||||||||||  |||||||| |||||||||||||||||||||| |||
seq2  GCAACCCTCCTGAAGGGGGGAGAAAAAGCCCATAACACATTTCCTACCAG  500

seq1  GCTCTCGTTAGTGATGTCTATGCAAAACTGGCTGAAATATCTGTGGAGAG  545
      | |||  ||||||||||| ||   ||||||| | |||| ||||| || ||
seq2  GTTCT-TTTAGTGATGTC-ATCGCAAACTGGTTAAAAT-TCTGT-GAAAG  546

seq1  TGGCTGTTAGCAAAGGTCAGTTGGTCTGGAGTTCAGACATC-TTCAAA  592
      ||||||||  | |||| || |||||||||||||||   ||| ||||||
seq2  TGGCTGTT--CCAAGG-CAATTGGTCTGGAGTTCA---ATCTTTCAAA  588

seq1: chr6_4960006_4960469
seq2: B6Ng01-051N11.g_89_148 (reverse)

seq1  TACACACACACACACACACACACACACACACACACGTAAGCATACATATA  50
      |||||||||||||||||||||||| |||||||||      || ||| | |
seq2  TACACACACACACACACACACACAAACACACACA------CACACACACA  44

seq1  CACAAACACATAAAATCATGTATACAAATAAGCACACTTATACTCAAGTA  100
      |||| ||||| |   |                                  
seq2  CACATACACACATGGT----------------------------------  60

seq1  CACACACATAAATACATACACACACACATACACACACATACACACATGCG  150
                                                        
seq2  --------------------------------------------------  60

seq1  CACACACACACATAAATACATATATACACACATAAATACACACACAATCC  200
                                                        
seq2  --------------------------------------------------  60

seq1  CCCCCCACAGATACACACACACACGTAAGCATACATATACACACACACAC  250
                                                        
seq2  --------------------------------------------------  60

seq1  ATATACACACATACACACACATAAATACACACACACACACACACATAAAT  300
                                                        
seq2  --------------------------------------------------  60

seq1  ACACACACAATCCCCCCCCCCCCCACACACACACACAGATACTCTCAGAG  350
                                                        
seq2  --------------------------------------------------  60

seq1  ACAGAACATAGCATATTTGATTTCTTGCCTTCCTGGGCTTACATTAGGAC  400
                                                        
seq2  --------------------------------------------------  60

seq1  TAATACTACCAGTGTGTGAAAAGTTTTCTTGAAACCTAAGGAAATTTAAA  450
                                                        
seq2  --------------------------------------------------  60

seq1  AATACACACATGGT  464
                    
seq2  --------------  60