BAC Information

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BAC

Clone NameB6Ng01-052E14
Chromosome6 (Build37)
Map Location 53,483,118 - 53,617,168
singlet/doubletdoublet
Overlap geneCreb5
Upstream geneHibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
Downstream geneLOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052E14.bB6Ng01-052E14.g
ACCDH875683DH875684
length1,200984
definitionDH875683|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E14, 5' end.DH875684|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,615,971 - 53,617,168)(53,483,118 - 53,484,100)
sequence
gaattccagtgctttgacctagagacatataagttagacagatattgttc
tgaattcaagcatgattttaaaaataaacacattaaaaaaaaagcctggt
attggtggcacacacctttaatcccagcacttggaaagcaaaggcaggcg
aatttctgagttcgaggccagcctggtctacagtgagatctaggacagag
aaactacacagagaaaccctgtctcgaaaaaccgaaagaaaaaaaaaaga
catatgaactgtcaagggtaaaggcgaactcagtgcagtactagtgtctg
taggcagatataggtagagtctatttattctgagaagagactgttgtcag
gacaacagagaaaaacgtttgaaatgcaatttaaagtcatgtgggttgta
cacctgagatttccttaatccagggcctccaaaagacttgctgatttgaa
ggtatagtgtggggctaaagtggctttcacttccatattcgcatgctcag
tggagcacagctgtacaacttggaccttaatgtactgaggctctccacta
aatgttccatggttctcttttgaaaccataagacggttcatctggcctca
cttcagctaggctaatggcagcctacctcccaaagattcctttgccgttt
ccaactggcaaaccctggcttcatttcctctggtgctggagggatcacag
agaagggctggcttggcatggaagttttctttcagcactgccccggcact
tggggagacagtgctccttctctgagcacacattctctgagcactttctc
tctgcacagtaagaaagagctggatgagaggacctttcccattcctatcc
aaggagcttggcgttcactctgtaactcctctgctgggtgatatggtggt
atcatagagattagtttaggttgctgagttcaatagagacaccagaagtc
ccaaggctaactcacatctttagagcataacttatcaaatatacgtggtt
attgggatataggctgctatttccaataattaagttattgtcgaggagtt
gaagtgactcccatcaagcctcaaacctgacatttttctcttagggacaa
gttgtccatgggcctttgaaggacaagggtggggggccagctcttgaaag
gctaacatgtgtttcggtgtgaaatacaaccactgaatacctgagttagg

gaattcactggagttttgcaagcaactgagctatatagattataaaatct
ggaaatacagaggaaaaacagaatagttacccatatccatgactacttgg
tggactcaaccaccattgttactgagaacagaaagaatagagtctggagg
tggctatatcaggaagtaatcaaacatcaaggaagtttcatttatttgaa
gacaaaaagcttccccagggtgcaggttcattttatatgtttaattgctt
gggctaaggcaaacccacagctggtaaagcaccgcctctaggtgtatgcc
tgcttctggaggaagttagtgcttatattagcgggctgaatcagaacgat
tcctccaccaatgacaggcagcagcatccactccatcaaaggcccagata
gaacacagaggctgtggaagggtaagcttgcccatgtgggttggagcacc
catcattccagccttagagtatcatattcttagttctccagcttggggct
cagccacgcccttatgctactgaacttctgggcttcaagccttcaggctg
ggatggaagtgcaccatcctgtgtcttggtccctctcaatttgtcatttt
gtggaccagttcctagtattaaatctctctagctcttcttgtctgttgat
catctttctctctgggtgggagttagggaggccttctttcatgaggcagc
ttctcagccttgttttttgtttgtttgttttttgttttgtttttgttttt
gtttgtttgtttgttttttgttttttttcgagacagggttttctctgtat
agccctgcctgtccactttgtagaccaggctggcctcgaactcagaaatc
cacctgcctctgcctcccgagtgctgggattaaaggtgtgcgccacacac
ccggctttgttttgtttttgagcagtctgcacatgccaggaaaatcaagg
ggaaggtgaagagtagaacttcagtcacatcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_53615971_53617168
seq2: B6Ng01-052E14.b_46_1245 (reverse)

seq1  CCTAACTCAGGGTCTCGATGGCTGTATTTCA-AC--AGACACATG-TAGG  46
      |||||||||||   ||  ||| ||||||||| ||  | ||||||| ||| 
seq2  CCTAACTCAGGTATTCAGTGGTTGTATTTCACACCGAAACACATGTTAGC  50

seq1  CTGTCTAGAGCTGGCCACCCACCC-TGTCCTTCAAAGG-CCATGGACAAA  94
      || || |||||||||| ||||||| ||||||||||||| |||||||| ||
seq2  CTTTCAAGAGCTGGCCCCCCACCCTTGTCCTTCAAAGGCCCATGGAC-AA  99

seq1  CTTGTCACTAAGAAGAAAATGTCAGGTTTGAGGCTTGATGGGAGTCACTT  144
      |||||| ||||||  |||||||||||||||||||||||||||||||||||
seq2  CTTGTCCCTAAGAGAAAAATGTCAGGTTTGAGGCTTGATGGGAGTCACTT  149

seq1  CAAACTCCTCGACATTACTTTAATTATTTGGAAAATAGCAGCATATAATC  194
      | |||||||||||| ||  |||||||||  | |||||||||| ||||  |
seq2  C-AACTCCTCGACAATAACTTAATTATT--GGAAATAGCAGCCTATATCC  196

seq1  CAATAACCACGTATATTTGATATGTTATGCTCTAAAGATGTGAGTTAGCC  244
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAATAACCACGTATATTTGATAAGTTATGCTCTAAAGATGTGAGTTAGCC  246

seq1  TTGGGACTTCTGGTGTCTCTATTGAACTCAGCAACCTAAACTAATCTCTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTTCTGGTGTCTCTATTGAACTCAGCAACCTAAACTAATCTCTA  296

seq1  TGATACCACCATATCACCCAGCAGAGGAGTTACAGAGTGAACGCCAAGCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCACCATATCACCCAGCAGAGGAGTTACAGAGTGAACGCCAAGCT  346

seq1  CCTTGGATAGGAATGGGAAAGGTCCTCTCATCCAGCTCTTTCTTACTGTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGATAGGAATGGGAAAGGTCCTCTCATCCAGCTCTTTCTTACTGTG  396

seq1  CAGAGAGAAAGTGCTCAGAGAATGTGTGCTCAGAGAAGGAGCACTGTCTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAAAGTGCTCAGAGAATGTGTGCTCAGAGAAGGAGCACTGTCTC  446

seq1  CCCAAGTGCCGGGGCAGTGCTGAAAGAAAACTTCCATGCCAAGCCAGCCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCCGGGGCAGTGCTGAAAGAAAACTTCCATGCCAAGCCAGCCC  496

seq1  TTCTCTGTGATCCCTCCAGCACCAGAGGAAATGAAGCCAGGGTTTGCCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGATCCCTCCAGCACCAGAGGAAATGAAGCCAGGGTTTGCCAG  546

seq1  TTGGAAACGGCAAAGGAATCTTTGGGAGGTAGGCTGCCATTAGCCTAGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACGGCAAAGGAATCTTTGGGAGGTAGGCTGCCATTAGCCTAGCT  596

seq1  GAAGTGAGGCCAGATGAACCGTCTTATGGTTTCAAAAGAGAACCATGGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGGCCAGATGAACCGTCTTATGGTTTCAAAAGAGAACCATGGAA  646

seq1  CATTTAGTGGAGAGCCTCAGTACATTAAGGTCCAAGTTGTACAGCTGTGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTGGAGAGCCTCAGTACATTAAGGTCCAAGTTGTACAGCTGTGC  696

seq1  TCCACTGAGCATGCGAATATGGAAGTGAAAGCCACTTTAGCCCCACACTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGAGCATGCGAATATGGAAGTGAAAGCCACTTTAGCCCCACACTA  746

seq1  TACCTTCAAATCAGCAAGTCTTTTGGAGGCCCTGGATTAAGGAAATCTCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCAAATCAGCAAGTCTTTTGGAGGCCCTGGATTAAGGAAATCTCA  796

seq1  GGTGTACAACCCACATGACTTTAAATTGCATTTCAAACGTTTTTCTCTGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTACAACCCACATGACTTTAAATTGCATTTCAAACGTTTTTCTCTGT  846

seq1  TGTCCTGACAACAGTCTCTTCTCAGAATAAATAGACTCTACCTATATCTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGACAACAGTCTCTTCTCAGAATAAATAGACTCTACCTATATCTG  896

seq1  CCTACAGACACTAGTACTGCACTGAGTTCGCCTTTACCCTTGACAGTTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGACACTAGTACTGCACTGAGTTCGCCTTTACCCTTGACAGTTCA  946

seq1  TATGTCTTTTTTTTTTCTTTCGGTTTTTCGAGACAGGGTTTCTCTGTGTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTTTTTTTTTTCTTTCGGTTTTTCGAGACAGGGTTTCTCTGTGTA  996

seq1  GTTTCTCTGTCCTAGATCTCACTGTAGACCAGGCTGGCCTCGAACTCAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTCCTAGATCTCACTGTAGACCAGGCTGGCCTCGAACTCAGA  1046

seq1  AATTCGCCTGCCTTTGCTTTCCAAGTGCTGGGATTAAAGGTGTGTGCCAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGCCTGCCTTTGCTTTCCAAGTGCTGGGATTAAAGGTGTGTGCCAC  1096

seq1  CAATACCAGGCTTTTTTTTTAATGTGTTTATTTTTAAAATCATGCTTGAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCAGGCTTTTTTTTTAATGTGTTTATTTTTAAAATCATGCTTGAA  1146

seq1  TTCAGAACAATATCTGTCTAACTTATATGTCTCTAGGTCAAAGCACTGGA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACAATATCTGTCTAACTTATATGTCTCTAGGTCAAAGCACTGGA  1196

seq1  ATTC  1198
      ||||
seq2  ATTC  1200

seq1: chr6_53483118_53484100
seq2: B6Ng01-052E14.g_68_1051

seq1  GAATTCACTGGAGTTTTGCAAGCAACTGAGCTATATAGATTATAAAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAGTTTTGCAAGCAACTGAGCTATATAGATTATAAAATCT  50

seq1  GGAAATACAGAGGAAAAACAGAATAGTTACCCATATCCATGACTACTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATACAGAGGAAAAACAGAATAGTTACCCATATCCATGACTACTTGG  100

seq1  TGGACTCAACCACCATTGTTACTGAGAACAGAAAGAATAGAGTCTGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCAACCACCATTGTTACTGAGAACAGAAAGAATAGAGTCTGGAGG  150

seq1  TGGCTATATCAGGAAGTAATCAAACATCAAGGAAGTTTCATTTATTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATATCAGGAAGTAATCAAACATCAAGGAAGTTTCATTTATTTGAA  200

seq1  GACAAAAAGCTTCCCCAGGGTGCAGGTTCATTTTATATGTTTAATTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAAGCTTCCCCAGGGTGCAGGTTCATTTTATATGTTTAATTGCTT  250

seq1  GGGCTAAGGCAAACCCACAGCTGGTAAAGCACCGCCTCTAGGTGTATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAAGGCAAACCCACAGCTGGTAAAGCACCGCCTCTAGGTGTATGCC  300

seq1  TGCTTCTGGAGGAAGTTAGTGCTTATATTAGCGGGCTGAATCAGAACGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGGAGGAAGTTAGTGCTTATATTAGCGGGCTGAATCAGAACGAT  350

seq1  TCCTCCACCAATGACAGGCAGCAGCATCCACTCCATCAAAGGCCCAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCACCAATGACAGGCAGCAGCATCCACTCCATCAAAGGCCCAGATA  400

seq1  GAACACAGAGGCTGTGGAAGGGTAAGCTTGCCCATGTGGGTTGGAGCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGAGGCTGTGGAAGGGTAAGCTTGCCCATGTGGGTTGGAGCACC  450

seq1  CATCATTCCAGCCTTAGAGTATCATATTCTTAGTTCTCCAGCTTGGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCCAGCCTTAGAGTATCATATTCTTAGTTCTCCAGCTTGGGGCT  500

seq1  CAGCCACGCCCTTATGCTACTGAACTTCTGGGCTTCAAGCCTTCAGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACGCCCTTATGCTACTGAACTTCTGGGCTTCAAGCCTTCAGGCTG  550

seq1  GGATGGAAGTGCACCATCCTGTGTCTTGGTCCCTCTCAATTTGTCATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAAGTGCACCATCCTGTGTCTTGGTCCCTCTCAATTTGTCATTTT  600

seq1  GTGGACCAGTTCCTAGTATTAAATCTCTCTAGCTCTTCTTGTCTGTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACCAGTTCCTAGTATTAAATCTCTCTAGCTCTTCTTGTCTGTTGAT  650

seq1  CATCTTTCTCTCTGGGTGGGAGTTAGGGAGGCCTTCTTTCATGAGGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCTCTCTGGGTGGGAGTTAGGGAGGCCTTCTTTCATGAGGCAGC  700

seq1  TTCTCAGCCTTGTTTTTTGTTTGTTTGTTTTTTGTTTTGTTTTTGTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGCCTTGTTTTTTGTTTGTTTGTTTTTTGTTTTGTTTTTGTTTTT  750

seq1  GTTTGTTTGTTTGTTTTTTG-TTTTTTTCGAGACAGGG-TTTCTCTGTAT  798
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  GTTTGTTTGTTTGTTTTTTGTTTTTTTTCGAGACAGGGTTTTCTCTGTAT  800

seq1  AGCCCTGCCTGTCCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGCCTGTCCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATC  850

seq1  CACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCACCACA  898
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCA-CACA  899

seq1  CCCGGC-TTGTTTTGTTTTTTGAGCAGTCTGCACATGCCAAGAAAATCAA  947
      |||||| |||||||| |||||||||||||||||||||||| |||||||||
seq2  CCCGGCTTTGTTTTG-TTTTTGAGCAGTCTGCACATGCCAGGAAAATCAA  948

seq1  GGGGAAGTGGAAGAGTAGAACTTCAGTCACATCTTC  983
      |||||||  |||||||||||||||||||||||||||
seq2  GGGGAAGGTGAAGAGTAGAACTTCAGTCACATCTTC  984