BAC Information

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BAC

Clone NameB6Ng01-052M09
Chromosome6 (Build37)
Map Location 79,099,249 - 79,250,676
singlet/doubletdoublet
Overlap genenone
Upstream geneEG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
Downstream geneLOC621815, LOC100043392, Lrrtm4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052M09.bB6Ng01-052M09.g
ACCDH876027DH876028
length1,146977
definitionDH876027|Mus musculus domesticus DNA, BAC clone: B6Ng01-052M09, 5' end.DH876028|Mus musculus domesticus DNA, BAC clone: B6Ng01-052M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,249,518 - 79,250,676)(79,099,249 - 79,100,230)
sequence
gaattcatgatatatcctcttagcgaatgagtgtgtttggaggcaaatgg
agaaatggagtaattataaattaattcaatgaaggtaaaacatggataag
ttatgaaatactgaatccatcctacttcattgttttatcacacacctaaa
gagttaatgtggactatccaaaaattgtgttgtcatagtttgagttagag
atttttcttgttactgctatgcactcacatactaaagcatgaacattttc
aaatgaaacatttacctttgattgaatttttaacagtatgacaatgcaaa
cagtatgactaaagtaacttaagatatgtaaaccagaggcatctgtgagg
agagaaataaatgcattgatattagatgaaaaaaggtaaattatagctaa
ttataattccacattttatgtctttaatcctgggctcaactgacatgaaa
gcagagaaggaagcatactcatgcctgctatttgggaacagagtgcatga
ttgacagtctctactagaaacacacacgatggacatcattagataatggg
tgggtacaagacagaatgttgagaaatatttattagtttaaaaatattat
ataaaatgtattatttgtaaattagcttttatggctttttcctcctgcaa
gccataaccatcatgttttagaacatattaggcaatataatattgagcat
cagaatgattacattttctgtacgataagctaccagagtggttgcccatc
ttcaggctacaggccagccttgagcctgaaagacacttttgtgactattc
aaagtcatacattcacaaattattcagtattacgagcttagtaccaatga
tagaaagacataatgctcagaggaaagcagcaagtttattcctggaccca
aatgatagaaggagaaactgacatccacctgtgtaccttgacccatgaca
cacatttttgtattgcctcattaccattttctgaaactcccactgcctgt
ccttctgtgttcagtaagtattttctaggactgaattgcttgggttttat
aatgatttctgaaagacataattattccatgaaatgaactaaacattatt
tttttccaattaattgagatactgtttttttaaatgtcttgttagg
gaattctaaagaagaaccttctttggccactttcttgaaccggtataatt
tgtatctgcttttttaattgtattgaagtaaatacttagttatttactca
tagataactgtacctcttacccttcagcaaagaagcttgtatttacagta
catagaagccatcacagaaatctattactggacaaaatgaaaaaccaagt
gcccttggagaagccaaccccagttgatgtatctacatctacatatatgg
cccttataactaagtatcagggaccatcattgacaagaatgttaatatca
actaccaattttataagttctagaatcttcaagaagacactccccatgtt
ttgtctccgagagatttcctaccttgagttaattgagataggagactcac
catgtatggtctatggttcaagataaccaaaacatctgttgtgacatagt
gtcttatgtgacagagaagcagcattatgacagcgtaactgcatggctac
ataaacaaggcctacacaatgccagcgtggataaacgtatcatatatccc
tttgtctcgatgaagagtaatcagccatttatagataagaaagtgagatt
caatagttcccgaaaaaaagtctgtgctgttatttaatcccaagggaata
ctcctaaaacacatatacatataaacatatgaagtacactaaagagactc
agcatgctacatgtatatggtaatatgtaaagttatatgtaaaaatgaaa
gaagaggtaatgaaatggaaagtggggttatggagaaaacgtgtatagaa
taggatgatagagatattgtaaattgaatttttgtgtataaaaattattt
aaattgtattattttatttttattataacttatttttattatgagttgtc
atttattattaatttataaattattttgttatttactccaaatattggct
cccgtccctatcccagcattctttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79249518_79250676
seq2: B6Ng01-052M09.b_44_1189 (reverse)

seq1  CCTAACAAAGACAATATTAAAAAACAGTATCTTCAATTAATTTTGAAAAA  50
      |||||| ||||| || | ||||||||||||| |||||||| || ||||||
seq2  CCTAAC-AAGAC-ATTTAAAAAAACAGTATC-TCAATTAA-TTGGAAAAA  46

seq1  AATAATGTTTTAGGTCATTTTCATTGAATAATTATTGTCTCTCAGAAATT  100
      ||||||| ||||| ||| |||||| ||||||||| ||||| ||||||| |
seq2  AATAATG-TTTAGTTCA-TTTCATGGAATAATTA-TGTCTTTCAGAAA-T  92

seq1  CATTATAAAAACCAAGCAATTCAGTACTAGAAAATAACTTACTG-ACACA  149
      |||||||||| |||||||||||||| ||||||||| |||||||| |||||
seq2  CATTATAAAACCCAAGCAATTCAGTCCTAGAAAAT-ACTTACTGAACACA  141

seq1  GAAAGGACAGGCAGTGGAGTTTTCAGAAAATGGTAATGAGGCAATAC-AA  198
      | |||||||||||||||   ||||||||||||||||||||||||||| ||
seq2  G-AAGGACAGGCAGTGGGAGTTTCAGAAAATGGTAATGAGGCAATACAAA  190

seq1  AATGTGTGTCATGGGTCAAGGTAACACAGGTGGATGTCAGTTTTCTCCTT  248
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  AATGTGTGTCATGGGTCAAGGT-ACACAGGTGGATGTCAG-TTTCTCCTT  238

seq1  CTATCATTTGGGTCCAAGGAATAAAACTTGCTGCTTTCCTCTGAGCATTA  298
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  CTATCATTTGGGTCC-AGGAAT-AAACTTGCTGCTTTCCTCTGAGCATTA  286

seq1  TGTCTTTCTATCATTGGTACTAAGCTCGTAATACTGAATAATTTGTGAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTATCATTGGTACTAAGCTCGTAATACTGAATAATTTGTGAAT  336

seq1  GTATGACTTTGAATAGTCACAAAAGTGTCTTTTCAGGCTCAAGGCTGGCC  398
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTATGACTTTGAATAGTCACAAAAGTGTC-TTTCAGGCTCAAGGCTGGCC  385

seq1  TGTAGCCTGAAGATGGGCAACCACTCTGGTAGCTTATCGTACAGAAAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTGAAGATGGGCAACCACTCTGGTAGCTTATCGTACAGAAAATG  435

seq1  TAATCATTCTGATGCTCAATATTATATTGCCTAATATGTTCTAAAACATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTCTGATGCTCAATATTATATTGCCTAATATGTTCTAAAACATG  485

seq1  ATGGTTATGGCTTGCAGGAGGAAAAAGCCATAAAAGCTAATTTACAAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTATGGCTTGCAGGAGGAAAAAGCCATAAAAGCTAATTTACAAATA  535

seq1  ATACATTTTATATAATATTTTTAAACTAATAAATATTTCTCAACATTCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTTATATAATATTTTTAAACTAATAAATATTTCTCAACATTCTG  585

seq1  TCTTGTACCCACCCATTATCTAATGATGTCCATCGTGTGTGTTTCTAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTACCCACCCATTATCTAATGATGTCCATCGTGTGTGTTTCTAGTA  635

seq1  GAGACTGTCAATCATGCACTCTGTTCCCAAATAGCAGGCATGAGTATGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGTCAATCATGCACTCTGTTCCCAAATAGCAGGCATGAGTATGCT  685

seq1  TCCTTCTCTGCTTTCATGTCAGTTGAGCCCAGGATTAAAGACATAAAATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTGCTTTCATGTCAGTTGAGCCCAGGATTAAAGACATAAAATG  735

seq1  TGGAATTATAATTAGCTATAATTTACCTTTTTTCATCTAATATCAATGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTATAATTAGCTATAATTTACCTTTTTTCATCTAATATCAATGCA  785

seq1  TTTATTTCTCTCCTCACAGATGCCTCTGGTTTACATATCTTAAGTTACTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTCTCCTCACAGATGCCTCTGGTTTACATATCTTAAGTTACTT  835

seq1  TAGTCATACTGTTTGCATTGTCATACTGTTAAAAATTCAATCAAAGGTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATACTGTTTGCATTGTCATACTGTTAAAAATTCAATCAAAGGTAA  885

seq1  ATGTTTCATTTGAAAATGTTCATGCTTTAGTATGTGAGTGCATAGCAGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCATTTGAAAATGTTCATGCTTTAGTATGTGAGTGCATAGCAGTA  935

seq1  ACAAGAAAAATCTCTAACTCAAACTATGACAACACAATTTTTGGATAGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAAATCTCTAACTCAAACTATGACAACACAATTTTTGGATAGTC  985

seq1  CACATTAACTCTTTAGGTGTGTGATAAAACAATGAAGTAGGATGGATTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAACTCTTTAGGTGTGTGATAAAACAATGAAGTAGGATGGATTCA  1035

seq1  GTATTTCATAACTTATCCATGTTTTACCTTCATTGAATTAATTTATAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCATAACTTATCCATGTTTTACCTTCATTGAATTAATTTATAATT  1085

seq1  ACTCCATTTCTCCATTTGCCTCCAAACACACTCATTCGCTAAGAGGATAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTTCTCCATTTGCCTCCAAACACACTCATTCGCTAAGAGGATAT  1135

seq1  ATCATGAATTC  1159
      |||||||||||
seq2  ATCATGAATTC  1146

seq1: chr6_79099249_79100230
seq2: B6Ng01-052M09.g_69_1045

seq1  GAATTCTAAAGAAGAACCTTCTTTGGCCACTTTCTTGAACCGGTATAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGAAGAACCTTCTTTGGCCACTTTCTTGAACCGGTATAATT  50

seq1  TGTATCTGCTTTTTTAATTGTATTGAAGTAAATACTTAGTTATTTACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGCTTTTTTAATTGTATTGAAGTAAATACTTAGTTATTTACTCA  100

seq1  TAGATAACTGTACCTCTTACCCTTCAGCAAAGAAGCTTGTATTTACAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAACTGTACCTCTTACCCTTCAGCAAAGAAGCTTGTATTTACAGTA  150

seq1  CATAGAAGCCATCACAGAAATCTATTACTGGACAAAATGAAAAACCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGCCATCACAGAAATCTATTACTGGACAAAATGAAAAACCAAGT  200

seq1  GCCCTTGGAGAAGCCAACCCCAGTTGATGTATCTACATCTACATATATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGAGAAGCCAACCCCAGTTGATGTATCTACATCTACATATATGG  250

seq1  CCCTTATAACTAAGTATCAGGGACCATCATTGACAAGAATGTTAATATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATAACTAAGTATCAGGGACCATCATTGACAAGAATGTTAATATCA  300

seq1  ACTACCAATTTTATAAGTTCTAGAATCTTCAAGAAGACACTCCCCATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCAATTTTATAAGTTCTAGAATCTTCAAGAAGACACTCCCCATGTT  350

seq1  TTGTCTCCGAGAGATTTCCTACCTTGAGTTAATTGAGATAGGAGACTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCGAGAGATTTCCTACCTTGAGTTAATTGAGATAGGAGACTCAC  400

seq1  CATGTATGGTCTATGGTTCAAGATAACCAAAACATCTGTTGTGACATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGGTCTATGGTTCAAGATAACCAAAACATCTGTTGTGACATAGT  450

seq1  GTCTTATGTGACAGAGAAGCAGCATTATGACAGCGTAACTGCATGGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATGTGACAGAGAAGCAGCATTATGACAGCGTAACTGCATGGCTAC  500

seq1  ATAAACAAGGCCTACACAATGCCAGCGTGGATAAACGTATCATATATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGGCCTACACAATGCCAGCGTGGATAAACGTATCATATATCCC  550

seq1  TTTGTCTCGATGAAGAGTAATCAGCCATTTATAGATAAGAAAGTGAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCGATGAAGAGTAATCAGCCATTTATAGATAAGAAAGTGAGATT  600

seq1  CAATAGTTCCCG-AAAAAAGTCTGTGCTGTTATTTAATCCCAAGGGAATA  649
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAATAGTTCCCGAAAAAAAGTCTGTGCTGTTATTTAATCCCAAGGGAATA  650

seq1  CTCCT-AAACACATATACATATAAACATATGAAGTACACTAAAGAGACTC  698
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAAACACATATACATATAAACATATGAAGTACACTAAAGAGACTC  700

seq1  AGCATGCTACATGTATATGGTAATATGTAAAGTTATATGTAAAAATGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTACATGTATATGGTAATATGTAAAGTTATATGTAAAAATGAAA  750

seq1  GAAGAGGTAATGAAATGGAAAGTGGGGTTATGGAGAAAACGTGTATAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTAATGAAATGGAAAGTGGGGTTATGGAGAAAACGTGTATAGAA  800

seq1  TAGGATGATAGAGATATTGTAAATTGAA-TTTTGTGTATAAAAA-TATTT  846
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  TAGGATGATAGAGATATTGTAAATTGAATTTTTGTGTATAAAAATTATTT  850

seq1  AAATTGTATTATTTTATTTTTATTTATAACTTATTTTTATTTATTGAGTT  896
      |||||||||||||||||||||| ||||||||||||||||||   ||||||
seq2  AAATTGTATTATTTTATTTTTA-TTATAACTTATTTTTATT--ATGAGTT  897

seq1  GTCATTTATTATTTATTTTATTAATTATTTTGTTTATTTACTTCCTAAAT  946
      ||||||||||| ||| ||||| |||||||||| |||||||||  | ||||
seq2  GTCATTTATTA-TTAATTTATAAATTATTTTG-TTATTTACT--CCAAAT  943

seq1  ATTGGCCCCCGGTCCCTATCCCCAGCATTCTTTCCC  982
      |||||| ||| |||||||| ||||||||||||||||
seq2  ATTGGCTCCC-GTCCCTAT-CCCAGCATTCTTTCCC  977