BAC Information

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BAC

Clone NameB6Ng01-053M01
Chromosome6 (Build37)
Map Location 93,230,290 - 93,324,129
singlet/doubletdoublet
Overlap geneLOC100043253
Upstream geneLOC665805, Prickle2, LOC545866, A730049H05Rik, LOC384461
Downstream geneLOC665831, Magi1, LOC100043262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053M01.bB6Ng01-053M01.g
ACCDH876707DH876708
length1,120858
definitionDH876707|Mus musculus domesticus DNA, BAC clone: B6Ng01-053M01, 5' end.DH876708|Mus musculus domesticus DNA, BAC clone: B6Ng01-053M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,323,005 - 93,324,129)(93,230,290 - 93,231,146)
sequence
gaattcacagatagcttgattttggaaaaactccaagtttggctatgtta
gaagaaagtctcaaggaaacaaaggacaacatttctaggtctcagtctgg
cttcatattttctgaaaatttctaagaatcaaattggaatagtaaacagg
caagatcaaaagagagcaaagaaaacagggcttcgccaaattgggacaat
tggataagggtctgacatcagttgatataggggcaaatgatatgagcgtc
tctatgtttttcactaagtcagctgtgccttccttggagggttacattaa
agcagaattgttctatatgagaaaatatactccatattacaaagggaatc
agagagaagggtcctgcatgatgttctcactattcaaatatacttagcta
ctctactcactccaccagcatcacatatcttggggacaaaactcttagaa
gtcctgtatcttaggtgggtgatcagatctggattagcattctatctgtg
atgctaggctattaccgtgagctcctcactgctacctgggactctgtcct
tcatcatttatttctctcctgagactggctttcttttatgtgatttgctt
cttttccttagcctttgaagagtaggttttgtttttttttcttgtagatg
ttttccgacaatgcgcattatctaaatgtgatccttccaacttcacattt
gccagattatctagctggatgtgaaattctaggctgagaagcatccttgc
tctcagtgacatgttgaaaagttgtatgctgttctgtttcctcatagttt
atatatggcctatgtatttgtttgtttgtttgtttttaccttaaaacttg
tagaaatcttacctttgtcctcaagggttatatttttaaattttaaaatt
agctcttttgggaactttatacaaaatatttttgatcatctcacacagcc
tccagatccacccatccaacctgtggacctttattttattttattttatt
tacatctattcagtccattttcactgccaacaaagtttgttttaccatag
atcattagagctctgtttatatttatccactagcaggtagaagtgtacat
tctcccctaatggcctatga
gaattcatccgttctaggccctcttgtaaaagcagagtcacgcaatgact
gtcctgtgtgcctagcttctgtcatgtggaaagatatttttctgggtgtt
tcttttggggttgtcgacgttgctttggggtctgcagtgtggcaggacat
catggtataagtgcttggtgaggatgctgctcacctgaggaaatcttgga
agcaagaagagagaggaagaggcatgggtcccagaactcccttggaaggg
taaaggctttaccctagtgacctaatttcttcacatcggattctacttct
taacagttctagggccttctaatagcattacagactggcaaacaagcctt
ccacacagtgctctgtggtggaagcattcaaagagctagtgatattttgg
atccaataattttttgttgggtaggggctgtcacacccactttggaaaat
ttagccacatctctggtctctatctacatttctttccccttttcaacaat
caaaagatgtctagacattgcagtcacactctgaatgtcccagtgcctca
gacaaggaacactgtcccctagagcacgcatgccttcaccgactgtaaaa
ggagcatggaggacagagagttctaggtgatatcttttcatgttgcttct
tccttacagtgggaagacgtttttcattattctcctgtgagggcaggaga
gacaaccaaaaattcagatagagtggcgtatgttctgctgctggtgtcta
gataagtcatgctgactaaatcagcatggagcttgatgtcaatgctaaga
gcttgtaaagaacaaaagcagaccaattaacagtggggcttcaataccat
tgctgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_93323005_93324129
seq2: B6Ng01-053M01.b_44_1163 (reverse)

seq1  TCATAGGCCA-TAGGGGAGAATGTACCACTACTACCCTGCTAAGTGGATA  49
      |||||||||| |||||||||||||| |||| ||| |||||| ||||||||
seq2  TCATAGGCCATTAGGGGAGAATGTA-CACTTCTA-CCTGCT-AGTGGATA  47

seq1  TATTATTAAACAGAGCTCTAATGATCTATTGTTAAAACAAACTTTGTTGG  99
       ||   |||||||||||||||||||||| || ||||||||||||||||||
seq2  AAT--ATAAACAGAGCTCTAATGATCTA-TGGTAAAACAAACTTTGTTGG  94

seq1  CAGTGAAAATTGGACTTGATAGATGTTAAATAAAATAAAATAAAATAAAA  149
      ||||||||| ||||||  ||||||| ||||||||||||||||||||||| 
seq2  CAGTGAAAA-TGGACTGAATAGATG-TAAATAAAATAAAATAAAATAAAG  142

seq1  GGTCACAGGTTGGATGGGTGGATCTGGGAGGCTGTGTGAGATGATC-AAA  198
      |  |||||||||||||||||||||| |||||||||||||||||||| |||
seq2  GTCCACAGGTTGGATGGGTGGATCT-GGAGGCTGTGTGAGATGATCAAAA  191

seq1  ATATTTTGTATAAAGTTCCC-AAAGAGCTAATTTTAAAATTTAAAAATAT  247
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATATTTTGTATAAAGTTCCCAAAAGAGCTAATTTTAAAATTTAAAAATAT  241

seq1  AACCCTTGAGGACAAAGGTAAGA-TTCTACAAGTTTTAAGGTAAAAACAA  296
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACCCTTGAGGACAAAGGTAAGATTTCTACAAGTTTTAAGGTAAAAACAA  291

seq1  ACAAACAAACAAATACATAGGCCATATATAAACTATGAGGAAACAGAACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAATACATAGGCCATATATAAACTATGAGGAAACAGAACA  341

seq1  GCATACAACTTTTCAACATGTCACTGAGAGCAAGGATGCTTCTCAGCCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACAACTTTTCAACATGTCACTGAGAGCAAGGATGCTTCTCAGCCTA  391

seq1  GAATTTCACATCCAGCTAGATAATCTGGCAAATGTGAAGTTGGAAGGATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCACATCCAGCTAGATAATCTGGCAAATGTGAAGTTGGAAGGATC  441

seq1  ACATTTAGATAATGCGCATTGTCGGAAAACATCTACAAGAAAAAAAAACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAGATAATGCGCATTGTCGGAAAACATCTACAAGAAAAAAAAACA  491

seq1  AAACCTACTCTTCAAAGGCTAAGGAAAAGAAGCAAATCACATAAAAGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTACTCTTCAAAGGCTAAGGAAAAGAAGCAAATCACATAAAAGAAA  541

seq1  GCCAGTCTCAGGAGAGAAATAAATGATGAAGGACAGAGTCCCAGGTAGCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCTCAGGAGAGAAATAAATGATGAAGGACAGAGTCCCAGGTAGCA  591

seq1  GTGAGGAGCTCACGGTAATAGCCTAGCATCACAGATAGAATGCTAATCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGCTCACGGTAATAGCCTAGCATCACAGATAGAATGCTAATCCA  641

seq1  GATCTGATCACCCACCTAAGATACAGGACTTCTAAGAGTTTTGTCCCCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATCACCCACCTAAGATACAGGACTTCTAAGAGTTTTGTCCCCAA  691

seq1  GATATGTGATGCTGGTGGAGTGAGTAGAGTAGCTAAGTATATTTGAATAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTGATGCTGGTGGAGTGAGTAGAGTAGCTAAGTATATTTGAATAG  741

seq1  TGAGAACATCATGCAGGACCCTTCTCTCTGATTCCCTTTGTAATATGGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACATCATGCAGGACCCTTCTCTCTGATTCCCTTTGTAATATGGAG  791

seq1  TATATTTTCTCATATAGAACAATTCTGCTTTAATGTAACCCTCCAAGGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCTCATATAGAACAATTCTGCTTTAATGTAACCCTCCAAGGAA  841

seq1  GGCACAGCTGACTTAGTGAAAAACATAGAGACGCTCATATCATTTGCCCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGCTGACTTAGTGAAAAACATAGAGACGCTCATATCATTTGCCCC  891

seq1  TATATCAACTGATGTCAGACCCTTATCCAATTGTCCCAATTTGGCGAAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAACTGATGTCAGACCCTTATCCAATTGTCCCAATTTGGCGAAGC  941

seq1  CCTGTTTTCTTTGCTCTCTTTTGATCTTGCCTGTTTACTATTCCAATTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTCTTTGCTCTCTTTTGATCTTGCCTGTTTACTATTCCAATTTG  991

seq1  ATTCTTAGAAATTTTCAGAAAATATGAAGCCAGACTGAGACCTAGAAATG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGAAATTTTCAGAAAATATGAAGCCAGACTGAGACCTAGAAATG  1041

seq1  TTGTCCTTTGTTTCCTTGAGACTTTCTTCTAACATAGCCAAACTTGGAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTTGTTTCCTTGAGACTTTCTTCTAACATAGCCAAACTTGGAGT  1091

seq1  TTTTCCAAAATCAAGCTATCTGTGAATTC  1125
      |||||||||||||||||||||||||||||
seq2  TTTTCCAAAATCAAGCTATCTGTGAATTC  1120

seq1: chr6_93230290_93231146
seq2: B6Ng01-053M01.g_68_925

seq1  GAATTCATCCGTTCTAGGCCCTCTTGTAAAAGCAGAGTCACGCAATGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCGTTCTAGGCCCTCTTGTAAAAGCAGAGTCACGCAATGACT  50

seq1  GTCCTGTGTGCCTAGCTTCTGTCATGTGGAAAGATATTTTTCTGGGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGTGCCTAGCTTCTGTCATGTGGAAAGATATTTTTCTGGGTGTT  100

seq1  TCTTTTGGGGTTGTCGACGTTGCTTTGGGGTCTGCAGTGTGGCAGGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGGGTTGTCGACGTTGCTTTGGGGTCTGCAGTGTGGCAGGACAT  150

seq1  CATGGTATAAGTGCTTGGTGAGGATGCTGCTCACCTGAGGAAATCTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTATAAGTGCTTGGTGAGGATGCTGCTCACCTGAGGAAATCTTGGA  200

seq1  AGCAAGAAGAGAGAGGAAGAGGCATGGGTCCCAGAACTCCCTTGGAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAAGAGAGAGGAAGAGGCATGGGTCCCAGAACTCCCTTGGAAGGG  250

seq1  TAAAGGCTTTACCCTAGTGACCTAATTTCTTCACATCGGATTCTACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCTTTACCCTAGTGACCTAATTTCTTCACATCGGATTCTACTTCT  300

seq1  TAACAGTTCTAGGGCCTTCTAATAGCATTACAGACTGGCAAACAAGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTCTAGGGCCTTCTAATAGCATTACAGACTGGCAAACAAGCCTT  350

seq1  CCACACAGTGCTCTGTGGTGGAAGCATTCAAAGAGCTAGTGATATTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGTGCTCTGTGGTGGAAGCATTCAAAGAGCTAGTGATATTTTGG  400

seq1  ATCCAATAATTTTTTGTTGGGTAGGGGCTGTCACACCCACTTTGGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATAATTTTTTGTTGGGTAGGGGCTGTCACACCCACTTTGGAAAAT  450

seq1  TTAGCCACATCTCTGGTCTCTATCTACATTTCTTTCCCCTTTTCAACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCACATCTCTGGTCTCTATCTACATTTCTTTCCCCTTTTCAACAAT  500

seq1  CAAAAGATGTCTAGACATTGCAGTCACACTCTGAATGTCCCAGTGCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATGTCTAGACATTGCAGTCACACTCTGAATGTCCCAGTGCCTCA  550

seq1  GACAAGGAACACTGTCCCCTAGAGCACGCATGCCTTCACCGACTGTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGAACACTGTCCCCTAGAGCACGCATGCCTTCACCGACTGTAAAA  600

seq1  GGAGCATGGAGGACAGAGAGTTCTAGGTGATATCTTTTCATGTTGCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGGAGGACAGAGAGTTCTAGGTGATATCTTTTCATGTTGCTTCT  650

seq1  TCCTTACAGTGGGAAGACG-TTTTCATTATTCTCCTGGGAGGGCAGGAGA  699
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  TCCTTACAGTGGGAAGACGTTTTTCATTATTCTCCTGTGAGGGCAGGAGA  700

seq1  GACAACC-AAAATTCAGATAGAGTGGCGTATGTTCTGCTGCTGGTGTCTA  748
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCAAAAATTCAGATAGAGTGGCGTATGTTCTGCTGCTGGTGTCTA  750

seq1  GATTAGTCATGCTTGACTAAATCAGCATGGAGCATGATGTCAATGCTAAG  798
      ||| |||||||| |||||||||||||||||||| ||||||||||||||||
seq2  GATAAGTCATGC-TGACTAAATCAGCATGGAGCTTGATGTCAATGCTAAG  799

seq1  AGCTAGAAAAGAACAAAAGCAGACACAAATAACAGT-GGGCTTCAATACC  847
      |||| | ||||||||||||||||| ||| ||||||| |||||||||||||
seq2  AGCTTGTAAAGAACAAAAGCAGAC-CAATTAACAGTGGGGCTTCAATACC  848

seq1  ATTGCTGTGA  857
      ||||||||||
seq2  ATTGCTGTGA  858