BAC Information

Click to search

BAC

Clone NameB6Ng01-053O17
Chromosome6 (Build37)
Map Location 131,835,795 - 131,836,845
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114
Downstream geneLOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053O17.bB6Ng01-053O17.g
ACCDH876824DH876825
length1,1941,048
definitionDH876824|Mus musculus domesticus DNA, BAC clone: B6Ng01-053O17, 5' end.DH876825|Mus musculus domesticus DNA, BAC clone: B6Ng01-053O17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcataaacagaatataaaaaaataccttaaagaaatgtgtgaaaac
aaaaaaattgaaagaaagaagtaaaacaattaaagaactaaaagtgaaaa
cagaatcaataaagaaaaacagaactgaggaaaatctgaagatgaaaact
ttaggaactctataacaaggtgaccctcaccaaccaaatatgacagatag
atgcaaaaatctcaggcactgaagacatgataaagaaaattgattaattc
cgcagtgaaaaatgttaaatttaaaatattaaatgtaaatttcttctgac
aggaaatctgaggctagatgaaaagaccaagtctatgcataataggaata
tgggaaggagaacaaatgcagaacaaaaacacagaaaatatttttaacaa
atttatagaagaagacttgccaacccaaaagaatgagattcctatcaagg
tacaaagtgtatacagaacaccaaatagaatgaaccatccccttgtcaaa
taattaaaatactaaatgtatggaaagaagaaagattatgaagctgaaat
gagaaataaacaggtaacatatacagtcagacttatcagaattacacatg
aattccaaatgcagactccaaaagcctttgccttttcttcttttaaagta
ttatattaccttgtttgactttttttcaatatgttgcatatttaaatcac
taagatgactgtcctttgatcataggaatccattccataggttgttggat
tcagtttattatgaactttgatatttttttttaaaactctttactctctg
gtctaaactcactgtataacatgtactagctccaaattgacaacaatatt
gctttggcctccccagtgctgacatgacatgtataaggcatcatgccaag
gaacttgatgcctttcagctaaagaaatgtgcaaatattataaagaataa
ttatcagggagaaacataaacaaatcagtcatttccagagtttactttgc
ttctactgtttttggttttaacacaaaagtttgcataatgtataagtttg
agatgttctcctttcccttttggaatatgtgtagaatgtcattcatggat
acttagtcatagcaaattagtaattgatttggtttttaacatgtggtgga
tggttgtttgtaaggagttgtaaaacaatattatatacatctgc
gaattccatgatatcttgaatcctaattcctaatattctaattctgtcag
agaaagtctgtacacagtctaaagctacatcatcaaggctttgatcattg
tcattaattatcaagaattcttaaatttacataaactctataagtcccag
atcaacagtcccagcacccatttccttagagaagaacaaagcacaaagca
aaaacatatttccttataggtttccacagcctgttctttatagttcctcc
agttttctagtacatcagagagcagtttgtagtaactgcttccatgcaaa
aatagcaaaatgacaaactactaaaactaaaatgattctttacaaagttt
tgaatgtatataagtaaaactgtaacagttagctctgtctaatatctttc
caggcaatgatatctttagttcttcaatcagatagaaatatataacacta
acttttatatgcttctatatcatctttcaattctttaatcttcatttcct
tgtgctagccataccatagactcatgtactctacttctaatactatttat
tcctaatatctatttctatctatctatctatctatctatctatctatcta
tctatctatctatctagacatacatacatatttccattccctttcttcct
gaaatcactctaactctctatcctttttgtctctaagtccaccctggcta
acaaatgcagcagtcattaatctggaaagtacataagctccctcatgatt
acaaattcaaggacaaatctggcaatggaccattcccatagaggtccatg
taagtgttttatggttcttatgattatattgtctagatactttcctatga
ctctaaaggccaagtggagggcctgttcctcatcctccacagcttcatga
ccatctccattcctcattcctgaaaactgcatctacttcatttactatgg
catgattagctctgaataatgggggaagaatattcccagaaagaaagact
gaaagtagaataattaagaaagcagatcattttgttccaaagcaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_131835795_131836845
seq2: B6Ng01-053O17.g_70_1117

seq1  GAATTCCATGATATCTTGAATCCTAATTCCTAATATTCTAATTCTGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATATCTTGAATCCTAATTCCTAATATTCTAATTCTGTCAG  50

seq1  AGAAAGTCTGTACACAGTCTAAAGCTACATCATCAAGGCTTTGATCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCTGTACACAGTCTAAAGCTACATCATCAAGGCTTTGATCATTG  100

seq1  TCATTAATTATCAAGAATTCTTAAATTTACATAAACTCTATAAGTCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAATTATCAAGAATTCTTAAATTTACATAAACTCTATAAGTCCCAG  150

seq1  ATCAACAGTCCCAGCACCCATTTCCTTAGAGAAGAACAAAGCACAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAGTCCCAGCACCCATTTCCTTAGAGAAGAACAAAGCACAAAGCA  200

seq1  AAAACATATTTCCTTATAGGTTTCCACAGCCTGTTCTTTATAGTTCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATATTTCCTTATAGGTTTCCACAGCCTGTTCTTTATAGTTCCTCC  250

seq1  AGTTTTCTAGTACATCAGAGAGCAGTTTGTAGTAACTGCTTCCATGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTAGTACATCAGAGAGCAGTTTGTAGTAACTGCTTCCATGCAAA  300

seq1  AATAGCAAAATGACAAACTACTAAAACTAAAATGATTCTTTACAAAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAAAATGACAAACTACTAAAACTAAAATGATTCTTTACAAAGTTT  350

seq1  TGAATGTATATAAGTAAAACTGTAACAGTTAGCTCTGTCTAATATCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTATATAAGTAAAACTGTAACAGTTAGCTCTGTCTAATATCTTTC  400

seq1  CAGGCAATGATATCTTTAGTTCTTCAATCAGATAGAAATATATAACACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATGATATCTTTAGTTCTTCAATCAGATAGAAATATATAACACTA  450

seq1  ACTTTTATATGCTTCTATATCATCTTTCAATTCTTTAATCTTCATTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATATGCTTCTATATCATCTTTCAATTCTTTAATCTTCATTTCCT  500

seq1  TGTGCTAGCCATACCATAGACTCATGTACTCTACTTCTAATACTATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAGCCATACCATAGACTCATGTACTCTACTTCTAATACTATTTAT  550

seq1  TCCTAATATCTATTTCTATCTATCTATCTATCTATCTATCTATCTATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATATCTATTTCTATCTATCTATCTATCTATCTATCTATCTATCTA  600

seq1  TCTATCTATCTATCTAGACATACATACATATTTCCATTCCCTTTCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTAGACATACATACATATTTCCATTCCCTTTCTTCCT  650

seq1  GAAATCACTCTAACTCTCTATCCTTTTTGTCTCTAAGTCCACCCTGGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCACTCTAACTCTCTATCCTTTTTGTCTCTAAGTCCACCCTGGCTA  700

seq1  ACAAATGCAGCAGTCATTAATCTGGAAAGTACATAAGCTCCCTCATGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCAGCAGTCATTAATCTGGAAAGTACATAAGCTCCCTCATGATT  750

seq1  ACAAATTCAAGGACAAATCTGGCAATGGACCATTCCCATAGAGGTCCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCAAGGACAAATCTGGCAATGGACCATTCCCATAGAGGTCCATG  800

seq1  TAAGTGTTTTATGGTTCTTATGATTATATTGTCTAGATACTTTCCTATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTTTTATGGTTCTTATGATTATATTGTCTAGATACTTTCCTATGA  850

seq1  CTCTAAAGGCCAAGTGGAGGGCCTGTTCCTCATCCTCCACAGCTTCATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGGCCAAGTGGAGGGCCTGTTCCTCATCCTCCACAGCTTCATGA  900

seq1  CCATCTCCATTCCTCATTCCTGAAAACTGCATCTACTTCATTTACTATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCATTCCTCATTCCTGAAAACTGCATCTACTTCATTTACTATGG  950

seq1  CATGATTAGCTCTGAATAATGGGGGAAGAATATTTCCCAGAAAGAAAGAC  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATGATTAGCTCTGAATAATGGGGGAAGAATA-TTCCCAGAAAGAAAGAC  999

seq1  TGAAAGTAGAATAGTAAAGAAAGCAGATCAATTTTGGTGCAAAAGCAACC  1050
      ||||||||||||| | ||||||||||||||  ||| || | |||||||||
seq2  TGAAAGTAGAATAATTAAGAAAGCAGATCA--TTTTGTTCCAAAGCAACC  1047

seq1  A  1051
      |
seq2  A  1048