BAC Information

Click to search

BAC

Clone NameB6Ng01-053O18
Chromosome6 (Build37)
Map Location 77,252,140 - 77,383,447
singlet/doubletdoublet
Overlap geneCtnna2
Upstream geneLOC668153, EG668155, LOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053O18.bB6Ng01-053O18.g
ACCDH876826DH876827
length1,0691,066
definitionDH876826|Mus musculus domesticus DNA, BAC clone: B6Ng01-053O18, 5' end.DH876827|Mus musculus domesticus DNA, BAC clone: B6Ng01-053O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,382,381 - 77,383,447)(77,252,140 - 77,253,208)
sequence
gaattcttcagcggtaggtgatccacagccatgggacttcctagagtgtt
ctttgttttccaccaaagcacagctctgtagatgccatttggctggcctg
ccaatcaggggaattttgcacagatctctctgcacctttcatctgtgcta
catttgctttttttttccccgtgtcctgaaatcattctcagaagcacagg
aaaatttgctattgtgtttcaagtgttcattgtcatatgggcatgcagtt
cttatgttgcttcagagagaaagtgtcttgatgtacccactatggtgctt
agtctaaggaattatagatacttggtgcttgatatgaaaatataggtgaa
gtaggtcagcttgtgatctgaactttagtttcacagaccaggtggttatt
caaaacatcccttccaccattggtggaaacaaaaagatttcagcacaaat
tggaaccccagagatattattgttattggacttgccaggcaatccataac
tcttccttgagttttctcatagaatacattggataaatatcccacacaca
agcacacaaatcaacacattccttgttccctcaggtgtcacattatatct
ggtttcttgtttctctgttttttgatgagtttatgggacttctgatttta
atatctgattagactctagcaaatgataaggaagaaaatatccaagtgat
ttttttttcttttttaaatatatagctaagtgctagcaatttggcttatt
aggcagagtgcctgcctagcatgcacaaagtcctgggttcaatacccagc
actgcataaatcagaaccagtgatgcatatctctaatcgttgcactcgtg
aggggggaaggggttatcagaagtctgcagcaattcttggcaacattgtg
agtctgaggctagctcttgatacatcagatcccaggagacctaaatgatg
ctgatttccaccccgttctggtctaacctattgaacagcacaacaaagta
gtctttgaaatgcccattgtgctgcctttcccttcagatggcattcaccc
atgaactttccaatgcgct
gaattcatttagagagggataagaaacctggatgtgagcaactcaggaaa
gatggcacagtggactctaaaatgaatgctggttgggtaaagctccgaaa
cacagaggagtccgatgaggtgtgcaagtgtgaaagcctaaagacagttt
acgctttctctccagtcacagcagggagactattcaactattggagagtc
tctgcatcagctaacatccacagagctctggaagcaaaactgactttatt
ccagacagaggaggaaggttctcacaagggctcagataactgacaccgga
gaatcataaaaagctgactgttgtctgagagttcaagccgtccagcctct
acagttaatggatgaggaaggtgaaatccaaagagattggtcaaatacta
ataacattcccagtgactgtgacaaaaatccccaaaagaaaagacctata
ggaggaatgatttgttttcgcccacattgtcaggttcattatgcccagag
cagcttagtccatgtgcttggacaggacaccaaggtggttcagatctgtc
gtggaagagacttgtgtctttcatagtttggtcagtaaacagagaaaggc
tttttccattattcttttttattctgacatgggagcccccagctcatggt
atgatggtacccaaaatcaggatgggtcctgtgcccccagttgaactttt
gtggaaacacctttaaactcacgttcataggggtacctcactggtctctt
aggtgattacaaatacaaataggtagataatggacatttaaatactagtt
accgttactgtgactgtgtttgacagtctaaatgtactgtaatatttttt
taaatcactactaaaacagatcagctccaagtatatgtgcatcttcttat
cctcatatactttaggatctccaacttgacagaagcctagaaacaacatc
acaatagcatacccttctactcttttctttgcaatgtgctccttaccaaa
aagtatttctttttctaacttgagatataattcaaaatacaatgggtgcc
cctcctaaacctcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_77382381_77383447
seq2: B6Ng01-053O18.b_49_1117 (reverse)

seq1  AGCGCTTTGGAAAGTTCAT-GGTGAATGCCATCTGAAAGGGAAAGGCAGC  49
      ||||| ||||||||||||| ||||||||||||||| ||||||||||||||
seq2  AGCGCATTGGAAAGTTCATGGGTGAATGCCATCTG-AAGGGAAAGGCAGC  49

seq1  ACAATGGGCATTTC-AAGACTACTTTGTTGTGCTG-TCAATAGGTTAAGA  97
      |||||||||||||| |||||||||||||||||||| |||||||||||   
seq2  ACAATGGGCATTTCAAAGACTACTTTGTTGTGCTGTTCAATAGGTTAGAC  99

seq1  CAGGATGGGGTGGAAATCAGCATCATTTAAGGTCTCCTGGGATCTGATGT  147
      ||| | |||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGAACGGGGTGGAAATCAGCATCATTT-AGGTCTCCTGGGATCTGATGT  148

seq1  ATCAAGAGCTAGCCTCAGACTCACAATGTTGCCAAGAATTGCTGCAGACT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGCTAGCCTCAGACTCACAATGTTGCCAAGAATTGCTGCAGACT  198

seq1  TCTGATTTTCCCCTTTCCCCCTCACGAGTGCAACGATTAGAGATATGCAT  247
      ||||| |  |||||| ||||||||||||||||||||||||||||||||||
seq2  TCTGA-TAACCCCTTCCCCCCTCACGAGTGCAACGATTAGAGATATGCAT  247

seq1  CACTGGTTCTGATTTATGCAGTGCTGGGTATTGAACCCAGGACTTTGTGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTTCTGATTTATGCAGTGCTGGGTATTGAACCCAGGACTTTGTGC  297

seq1  ATGCTAGGCAGGCACTCTGCCTAATAAGCCAAATTGCTAGCACTTAGCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGGCAGGCACTCTGCCTAATAAGCCAAATTGCTAGCACTTAGCTA  347

seq1  TATATTT-AAAAAGAAAAAAAAATCACTTGGATATTTTCTTCCTTATCAT  396
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAAAAAAGAAAAAAAAATCACTTGGATATTTTCTTCCTTATCAT  397

seq1  TTGCTAGAGTCTAATCAGATATTAAAATCAGAAGTCCCATAAACTCATC-  445
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGCTAGAGTCTAATCAGATATTAAAATCAGAAGTCCCATAAACTCATCA  447

seq1  AAAAACAGAGAAACAAGAAACCAGATATAATGTGACACCTGAGGGAACAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGAGAAACAAGAAACCAGATATAATGTGACACCTGAGGGAACAA  497

seq1  GGAATGTGTTGATTTGTGTGCTTGTGTGTGGGATATTTATCCAATGTATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTGTTGATTTGTGTGCTTGTGTGTGGGATATTTATCCAATGTATT  547

seq1  CTATGAGAAAACTCAAGGAAGAGTTATGGATTGCCTGGCAAGTCCAATAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGAAAACTCAAGGAAGAGTTATGGATTGCCTGGCAAGTCCAATAA  597

seq1  CAATAATATCTCTGGGGTTCCAATTTGTGCTGAAATCTTTTTGTTTCCAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATCTCTGGGGTTCCAATTTGTGCTGAAATCTTTTTGTTTCCAC  647

seq1  CAATGGTGGAAGGGATGTTTTGAATAACCACCTGGTCTGTGAAACTAAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTGGAAGGGATGTTTTGAATAACCACCTGGTCTGTGAAACTAAAG  697

seq1  TTCAGATCACAAGCTGACCTACTTCACCTATATTTTCATATCAAGCACCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCACAAGCTGACCTACTTCACCTATATTTTCATATCAAGCACCA  747

seq1  AGTATCTATAATTCCTTAGACTAAGCACCATAGTGGGTACATCAAGACAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTATAATTCCTTAGACTAAGCACCATAGTGGGTACATCAAGACAC  797

seq1  TTTCTCTCTGAAGCAACATAAGAACTGCATGCCCATATGACAATGAACAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTGAAGCAACATAAGAACTGCATGCCCATATGACAATGAACAC  847

seq1  TTGAAACACAATAGCAAATTTTCCTGTGCTTCTGAGAATGATTTCAGGAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACACAATAGCAAATTTTCCTGTGCTTCTGAGAATGATTTCAGGAC  897

seq1  ACGGGGAAAAAAAAAGCAAATGTAGCACAGATGAAAGGTGCAGAGAGATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGAAAAAAAAAGCAAATGTAGCACAGATGAAAGGTGCAGAGAGATC  947

seq1  TGTGCAAAATTCCCCTGATTGGCAGGCCAGCCAAATGGCATCTACAGAGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAAATTCCCCTGATTGGCAGGCCAGCCAAATGGCATCTACAGAGC  997

seq1  TGTGCTTTGGTGGAAAACAAAGAACACTCTAGGAAGTCCCATGGCTGTGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTGGTGGAAAACAAAGAACACTCTAGGAAGTCCCATGGCTGTGG  1047

seq1  ATCACCTACCGCTGAAGAATTC  1067
      ||||||||||||||||||||||
seq2  ATCACCTACCGCTGAAGAATTC  1069

seq1: chr6_77252140_77253208
seq2: B6Ng01-053O18.g_69_1134

seq1  GAATTCATTTAGAGAGGGATAAGAAACCTGGATGTGAGCAACTCAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAGAGAGGGATAAGAAACCTGGATGTGAGCAACTCAGGAAA  50

seq1  GATGGCACAGTGGACTCTAAAATGAATGCTGGTTGGGTAAAGCTCCGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCACAGTGGACTCTAAAATGAATGCTGGTTGGGTAAAGCTCCGAAA  100

seq1  CACAGAGGAGTCCGATGAGGTGTGCAAGTGTGAAAGCCTAAAGACAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGAGTCCGATGAGGTGTGCAAGTGTGAAAGCCTAAAGACAGTTT  150

seq1  ACGCTTTCTCTCCAGTCACAGCAGGGAGACTATTCAACTATTGGAGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTTCTCTCCAGTCACAGCAGGGAGACTATTCAACTATTGGAGAGTC  200

seq1  TCTGCATCAGCTAACATCCACAGAGCTCTGGAAGCAAAACTGACTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCAGCTAACATCCACAGAGCTCTGGAAGCAAAACTGACTTTATT  250

seq1  CCAGACAGAGGAGGAAGGTTCTCACAAGGGCTCAGATAACTGACACCGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGAGGAGGAAGGTTCTCACAAGGGCTCAGATAACTGACACCGGA  300

seq1  GAATCATAAAAAGCTGACTGTTGTCTGAGAGTTCAAGCCGTCCAGCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATAAAAAGCTGACTGTTGTCTGAGAGTTCAAGCCGTCCAGCCTCT  350

seq1  ACAGTTAATGGATGAGGAAGGTGAAATCCAAAGAGATTGGTCAAATACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAATGGATGAGGAAGGTGAAATCCAAAGAGATTGGTCAAATACTA  400

seq1  ATAACATTCCCAGTGACTGTGACAAAAATCCCCAAAAGAAAAGACCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTCCCAGTGACTGTGACAAAAATCCCCAAAAGAAAAGACCTATA  450

seq1  GGAGGAATGATTTGTTTTCGCCCACATTGTCAGGTTCATTATGCCCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAATGATTTGTTTTCGCCCACATTGTCAGGTTCATTATGCCCAGAG  500

seq1  CAGCTTAGTCCATGTGCTTGGACAGGACACCAAGGTGGTTCAGATCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAGTCCATGTGCTTGGACAGGACACCAAGGTGGTTCAGATCTGTC  550

seq1  GTGGAAGAGACTTGTGTCTTTCATAG-TTGGTCAGTAAACAGAGAAAGGC  599
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTGGAAGAGACTTGTGTCTTTCATAGTTTGGTCAGTAAACAGAGAAAGGC  600

seq1  TTTTTCCATTATTC-TTTTTATTCTGACATGGGAGCCCCCAGCTCATGGT  648
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTTTCCATTATTCTTTTTTATTCTGACATGGGAGCCCCCAGCTCATGGT  650

seq1  ATGATGGTACCCAAAATCAGGATGGGTCCTGTGCCCCCAGTTAAACTTTT  698
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGATGGTACCCAAAATCAGGATGGGTCCTGTGCCCCCAGTTGAACTTTT  700

seq1  GTGGAAACACCTTTAAACTCACGTTCATAGGGGTACCTCACTGGTCTCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAACACCTTTAAACTCACGTTCATAGGGGTACCTCACTGGTCTCTT  750

seq1  AGGTGATTACAAATACAATTAGGTAGATAATGGACA-TTAAATACTAGTT  797
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  AGGTGATTACAAATACAAATAGGTAGATAATGGACATTTAAATACTAGTT  800

seq1  ACCGTTACTGTGACTGTGTTTGACAGTCTAAAATGTACTGTAATA-TTTT  846
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  ACCGTTACTGTGACTGTGTTTGACAGTCT-AAATGTACTGTAATATTTTT  849

seq1  TTAAATCACTACT-AAACAGATCAGCTCCAAGTATATGTGCATCTTCTTT  895
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  TTAAATCACTACTAAAACAGATCAGCTCCAAGTATATGTGCATCTTC-TT  898

seq1  ATCCTCATATTACTTTTAGGATCTCCAACTTGACAGAAAGCCTAGAAACA  945
      ||||||||| ||| |||||||||||||||||||||| |||||||||||||
seq2  ATCCTCATA-TAC-TTTAGGATCTCCAACTTGACAG-AAGCCTAGAAACA  945

seq1  ACATCACAATAGCATAGCCTTCTACATCTTTTCTTTGCAATGTGCTCCTT  995
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  ACATCACAATAGCATACCCTTCTAC-TCTTTTCTTTGCAATGTGCTCCTT  994

seq1  ACCAAAAAAGTATATCTTTTTCTAACTTTGAGTGTTTATTTCATATTCAA  1045
      ||| ||||||||| |||||||||||| |||||   | |||  | || |||
seq2  ACC-AAAAAGTATTTCTTTTTCTAAC-TTGAGATATAATTCAAAATACAA  1042

seq1  TGTGTGCCCCTCCTAAACCTCCCC  1069
      || |||||||||||||||||||||
seq2  TGGGTGCCCCTCCTAAACCTCCCC  1066