BAC Information

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BAC

Clone NameB6Ng01-054I23
Chromosome6 (Build37)
Map Location 87,878,563 - 88,069,185
singlet/doubletdoublet
Overlap gene8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1
Upstream geneAak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg
Downstream geneGata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054I23.bB6Ng01-054I23.g
ACCDH877273DH877274
length1,1281,013
definitionDH877273|Mus musculus domesticus DNA, BAC clone: B6Ng01-054I23, 5' end.DH877274|Mus musculus domesticus DNA, BAC clone: B6Ng01-054I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,068,031 - 88,069,185)(87,878,563 - 87,879,581)
sequence
gaattctagggcagattatgctagtatgagactctgtttttagacaaacc
atgaatgggcagaggtccctggcggtgtatcctcataaggttgggaaaat
gaagtataacaaaagcccaaagctagcctaagtccttctgcagcctgccc
agtcaccacctgtcaccttctacctcttgccagactctttggccccttcc
ttccagaactccttgccccttagcatcctcagctcattcccaattttatt
tcttccccagatcattgtcatgaaactttgataaggagttaaatagtaga
acaaatttttaattaatttaacttttgtgttgacatagttcaaagttggc
agcagactttgtgtctcttacacctccacagacactagtgtgagtcttga
agaagcgagaatgctgagctggagatgccacctgtgtggttcagtgtttg
cctaacaacacaatgcctgcctgcatttgatagccagcagttcaaactca
acatggtgacgtcagcccgtgcaccaacaagtgatgccgtctgaactcga
gaggtggaagcaggaagatcaggagttcaaggtcacaaccacctgaaact
ctagttcccagagatatgatggtcacttctggcatctgtgcacccgaggt
gctgtacatacatagaaacagaagaatgcacatacaataaaaataaacag
cttttaaaacttcacttttagccgggcgtggtggctcacgcctttaatcc
cagcactcaggaggcagaggcaggcggatttctgagttcgaggccagcct
ggtctacaaagtgagttccaggacagccaggactatacagagaaaccctg
tcttaaaacaaaacaaaaaacaaaacaaaaaacaaacaaaaaaacccaaa
acaaaaaaacttcacttttatgatcatgaaatgcagacatatgatcatag
atattatggatcaaatgccagaagggattttagatcagaggtcagaaaca
ggtagtgagcagagatcatgcatatatatatttattacacttgggtccat
gagagcaaagatcagatgcaagtgtcagcattccagagcatgtgctacaa
ggtggagtggctgatgtgctgtacatct
gaattcctggcaacttcctgtgaagttgtaaggggatcagctttggtgat
tagtcattgttgacttctgatggctgacgttatgctcatcttcaaagtcc
tcattttctttttagaacctcttgacccatctctgcctttctgcatcaaa
cacctattttaatattgtcatttgtcagcactactttattactttgttaa
aatatatttattatttattggactagagccctatcagtggtggcaacatc
accaaatagagtgtagggccaacttccaagcaaatgtgtgagcagtcttt
ccttctaaattagcaaaggtgctcactgtgtgagccatgtggtagtctaa
tacattccctgctctaatttggcctaagtggttcaggataatcatctagg
cagtgaagctagctgcttccattttgggtcatttttactgttgccacatg
aaacatctcagatagacattcttgacattgacatctgtgttgtctccagg
aagaacttcattcaaagcctcgggtgcatctcagtagagtttatacttca
gttgtgacattgactgttaatagcaaagttaaccaccaagtaggtctgat
aacattggtctctacttagcccacaacaacagtaccaatgccaccaattt
tatagatatcgaggagaggcaagtggaaaggcttgagatttggacaagtt
ggtggtaagatacaatcaaagccaccagcagtgtggttccactgtgctgc
catcttcataagtgacccaagggatattaagtacttggcctcagcatatt
ttcaccattccaaacagaagttaccacaaatgctaccatatcaggtacac
tgccagtttccttaaaaagtgtttctatatttatgactattagtgttttg
ggttcatgcatgtctatgtaccgtgtgcatgcctgtgcccatgaatgcca
gagagagcattggattccctggaactggagttaagacagtgaatgcacat
gtggggtgctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_88068031_88069185
seq2: B6Ng01-054I23.b_50_1177 (reverse)

seq1  AGATGTACCAGGCACATCAGGCACATCACACTTGTAGCACATGCTCTTGG  50
      ||||||||   ||||||||| |||  ||| |||||||||||||||||   
seq2  AGATGTAC--AGCACATCAGCCACTCCAC-CTTGTAGCACATGCTCT---  44

seq1  GGAATGCTTGACAAACTATGCATCTGGTTCTTTGCTCTCATGGGCCCAAG  100
      ||||||| ||||  ||| ||||||| | ||||||||||||||| ||||||
seq2  GGAATGC-TGAC--ACT-TGCATCT-GATCTTTGCTCTCATGGACCCAAG  89

seq1  TGTGATATATATATATAATGCATTGATCTCTGCTCACTACCTGTTTCTGA  150
      ||| ||| |||||||| ||||| |||||||||||||||||||||||||||
seq2  TGTAATAAATATATAT-ATGCA-TGATCTCTGCTCACTACCTGTTTCTGA  137

seq1  CCTCTGATCTAAAATCCCTTTCTGGCATTTGATCCAATAATATCTATGAT  200
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  CCTCTGATCTAAAATCCC-TTCTGGCATTTGATCC-ATAATATCTATGAT  185

seq1  CATATGTCTGCATTTCATGATCATAAAAGTGAAGTTTTTTTTTGTTTTTT  250
      ||||||||||||||||||||||||||||||||||  ||||||||||||  
seq2  CATATGTCTGCATTTCATGATCATAAAAGTGAAG--TTTTTTTGTTTT--  231

seq1  GGGTTTTTTTTGTTTTGTTTTTTTGTTTTTGTTTTTTTGTTTTTGTTTTT  300
       || |||||||||||   |||||||||||   ||||||||||   | |||
seq2  -GGGTTTTTTTGTTT--GTTTTTTGTTTT--GTTTTTTGTTT---TGTTT  273

seq1  TAAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACTCACTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACTCACTTTGT  323

seq1  AGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAG  373

seq1  TGCTGGGATTAAAGGCGTGAGCCACCACGCCCGGCTAAAAGTGAAGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGGCGTGAGCCACCACGCCCGGCTAAAAGTGAAGTTTT  423

seq1  AAAAGCTGTTTATTTTTATTGTATGTGCATTCTTCTGTTTCTATGTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGTTTATTTTTATTGTATGTGCATTCTTCTGTTTCTATGTATGT  473

seq1  ACAGCACCTCGGGTGCACAGATGCCAGAAGTGACCATCATATCTCTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACCTCGGGTGCACAGATGCCAGAAGTGACCATCATATCTCTGGGA  523

seq1  ACTAGAGTTTCAGGTGGTTGTGACCTTGAACTCCTGATCTTCCTGCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGTTTCAGGTGGTTGTGACCTTGAACTCCTGATCTTCCTGCTTCC  573

seq1  ACCTCTCGAGTTCAGACGGCATCACTTGTTGGTGCACGGGCTGACGTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCGAGTTCAGACGGCATCACTTGTTGGTGCACGGGCTGACGTCAC  623

seq1  CATGTTGAGTTTGAACTGCTGGCTATCAAATGCAGGCAGGCATTGTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGAGTTTGAACTGCTGGCTATCAAATGCAGGCAGGCATTGTGTTG  673

seq1  TTAGGCAAACACTGAACCACACAGGTGGCATCTCCAGCTCAGCATTCTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAAACACTGAACCACACAGGTGGCATCTCCAGCTCAGCATTCTCG  723

seq1  CTTCTTCAAGACTCACACTAGTGTCTGTGGAGGTGTAAGAGACACAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAAGACTCACACTAGTGTCTGTGGAGGTGTAAGAGACACAAAGT  773

seq1  CTGCTGCCAACTTTGAACTATGTCAACACAAAAGTTAAATTAATTAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCAACTTTGAACTATGTCAACACAAAAGTTAAATTAATTAAAAA  823

seq1  TTTGTTCTACTATTTAACTCCTTATCAAAGTTTCATGACAATGATCTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTACTATTTAACTCCTTATCAAAGTTTCATGACAATGATCTGGG  873

seq1  GAAGAAATAAAATTGGGAATGAGCTGAGGATGCTAAGGGGCAAGGAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATAAAATTGGGAATGAGCTGAGGATGCTAAGGGGCAAGGAGTTC  923

seq1  TGGAAGGAAGGGGCCAAAGAGTCTGGCAAGAGGTAGAAGGTGACAGGTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAAGGGGCCAAAGAGTCTGGCAAGAGGTAGAAGGTGACAGGTGG  973

seq1  TGACTGGGCAGGCTGCAGAAGGACTTAGGCTAGCTTTGGGCTTTTGTTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGCAGGCTGCAGAAGGACTTAGGCTAGCTTTGGGCTTTTGTTAT  1023

seq1  ACTTCATTTTCCCAACCTTATGAGGATACACCGCCAGGGACCTCTGCCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTTTCCCAACCTTATGAGGATACACCGCCAGGGACCTCTGCCCA  1073

seq1  TTCATGGTTTGTCTAAAAACAGAGTCTCATACTAGCATAATCTGCCCTAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTTTGTCTAAAAACAGAGTCTCATACTAGCATAATCTGCCCTAG  1123

seq1  AATTC  1155
      |||||
seq2  AATTC  1128

seq1: chr6_87878563_87879581
seq2: B6Ng01-054I23.g_67_1079

seq1  GAATTCCTGGCAACTTCCTGTGAAGTTGTAAGGGGATCAGCTTTGGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCAACTTCCTGTGAAGTTGTAAGGGGATCAGCTTTGGTGAT  50

seq1  TAGTCATTGTTGACTTCTGATGGCTGACGTTATGCTCATCTTCAAAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATTGTTGACTTCTGATGGCTGACGTTATGCTCATCTTCAAAGTCC  100

seq1  TCATTTTCTTTTTAGAACCTCTTGACCCATCTCTGCCTTTCTGCATCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCTTTTTAGAACCTCTTGACCCATCTCTGCCTTTCTGCATCAAA  150

seq1  CACCTATTTTAATATTGTCATTTGTCAGCACTACTTTATTACTTTGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATTTTAATATTGTCATTTGTCAGCACTACTTTATTACTTTGTTAA  200

seq1  AATATATTTATTATTTATTGGACTAGAGCCCTATCAGTGGTGGCAACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTATTATTTATTGGACTAGAGCCCTATCAGTGGTGGCAACATC  250

seq1  ACCAAATAGAGTGTAGGGCCAACTTCCAAGCAAATGTGTGAGCAGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATAGAGTGTAGGGCCAACTTCCAAGCAAATGTGTGAGCAGTCTTT  300

seq1  CCTTCTAAATTAGCAAAGGTGCTCACTGTGTGAGCCATGTGGTAGTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAAATTAGCAAAGGTGCTCACTGTGTGAGCCATGTGGTAGTCTAA  350

seq1  TACATTCCCTGCTCTAATTTGGCCTAAGTGGTTCAGGATAATCATCTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCCTGCTCTAATTTGGCCTAAGTGGTTCAGGATAATCATCTAGG  400

seq1  CAGTGAAGCTAGCTGCTTCCATTTTGGGTCATTTTTACTGTTGCCACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGCTAGCTGCTTCCATTTTGGGTCATTTTTACTGTTGCCACATG  450

seq1  AAACATCTCAGATAGACATTCTTGACATTGACATCTGTGTTGTCTCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTCAGATAGACATTCTTGACATTGACATCTGTGTTGTCTCCAGG  500

seq1  AAGAACTTCATTCAAAGCCTCGGGTGCATCTCAGTAGAGTTTATACTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTCATTCAAAGCCTCGGGTGCATCTCAGTAGAGTTTATACTTCA  550

seq1  GTTGTGACATTGACTGTTAATAGCAAAGTTAACCACCAAGTAGGTCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGACATTGACTGTTAATAGCAAAGTTAACCACCAAGTAGGTCTGAT  600

seq1  AACATTGGTCTCTACTTAGCCCACAACAACAGTACCAATGCCACCAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGGTCTCTACTTAGCCCACAACAACAGTACCAATGCCACCAATTT  650

seq1  TATAGATATCGAGGAGAGGCAAGTGGAAAGGCTTGAGATTTGGACAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATATCGAGGAGAGGCAAGTGGAAAGGCTTGAGATTTGGACAAGTT  700

seq1  GGTGGTAAGATACAATCAAAGCCACCAGCAGTGTGGTTCCACTGTGCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAAGATACAATCAAAGCCACCAGCAGTGTGGTTCCACTGTGCTGC  750

seq1  CATCTTCATAAGTGACCCAAGGGATATTAAGTACTTGGCCTCAGCATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCATAAGTGACCCAAGGGATATTAAGTACTTGGCCTCAGCATATT  800

seq1  TTCACCATTCCAAACAGAAGTTACCACAAATGCTACCATATCAGGTACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCATTCCAAACAGAAGTTACCACAAATGCTACCATATCAGGTACAC  850

seq1  TGCCAGTTTCCTTAAAAAGTGTTTCTATATTTTATGACTATTAGTGTTTT  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCCAGTTTCCTTAAAAAGTGTTTCTATA-TTTATGACTATTAGTGTTTT  899

seq1  GGGTTCATGCATGTCTATGTACCGTGTGCATGCCTGTTGCCCATGAATGC  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGTTCATGCATGTCTATGTACCGTGTGCATGCCTG-TGCCCATGAATGC  948

seq1  CAGAAGAGAGCATTGGATTCCCTGGAACTGGAGTTAAGGACAGTTGAATG  1000
      ||| ||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  CAG-AGAGAGCATTGGATTCCCTGGAACTGGAGTTAA-GACAG-TGAATG  995

seq1  CCACAATGT-GGGTGCTAGG  1019
       ||| |||| ||||||||||
seq2  -CAC-ATGTGGGGTGCTAGG  1013