BAC Information

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BAC

Clone NameB6Ng01-054K24
Chromosome6 (Build37)
Map Location 118,757,795 - 118,889,805
singlet/doubletdoublet
Overlap geneCacna1c
Upstream geneEG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
Downstream geneDcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054K24.bB6Ng01-054K24.g
ACCDH877365DH877366
length1,077962
definitionDH877365|Mus musculus domesticus DNA, BAC clone: B6Ng01-054K24, 5' end.DH877366|Mus musculus domesticus DNA, BAC clone: B6Ng01-054K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,757,795 - 118,758,877)(118,888,846 - 118,889,805)
sequence
gaattccatacttgtgatctgcactcctgtcacttcccaaacataagaac
cacaaagcctggcgtgtggttgtacgcagtggctactgctgctaaaacag
agagaaggatgcacagaaggtgtctaacaagggtgatgacaagcagagcc
gcaccaagagggagggcaggcaggagcacaatattcctagctgctgtcac
cttctacccttacttagaagtcatctataggattcaatctaggttgctaa
gtgctgaggttgacagatacaggttcaagccacccaaacacccttgtacc
cacaaagcctggctctggggcaaattgagtcacaggctcctcatgggcac
agcttcccagcaggaccaaggagaacacgcaggaagacaggctgcctgcc
tgctgtactagcctggggcatgctctttaggaagagcctctgacctgcag
cacccatcagctttaaagaggaactgggccagcatgggccccttggccat
ggatcagggccaacctgcaatgacaggacagggaactctgaaggccagaa
aagactggggacccaaatggctccagggtttctttccaccccacccccaa
gatgaaggaaacaagacacagtagttcctcccctgatcaagaatcagaaa
aactgatcggcagaggggcggggcagtctgttggtcagggagtaggggag
gcggcagagggagttgctcgctgggttgactccctttctaccatcaaggg
ctctgcaatcttattctctctagaattcccttcagtgtgctcagggactt
ccagggcagctatttgagagaaagaagacatggttgctgtctgaagcagc
gagaaggtctctccagagactgctgagtcggggaagcatagcaatagttt
agtgccctggagcctccgcttggctttggctatgcatacagcctctcccc
tcataataatgcatccgcatccaagtcccttcacctgcacgtgccgtgtg
cacacccctctcacactgttactgagcatccgaagaaacagcctccccca
gcccacacctccaatgggcttcgcctt
gaattccaggccgatgagggaggctggatattgctatctctgctggcatc
gtggcatgaggccttgatcgatgtgatggaggtagggtcatactgacctg
tacagatctgaggatgggacggctaatgaccaccactgtctagctctctt
ggtgaagagctccactcttggctcgtaaccaacagctttttgattacaga
cctgggagacagcaatttggagcacttggcccattcctgtttcaggcata
aagctcaggtctgggtatctctgaatccataggtgcttggagcatccttc
tacatgaaggaagaaaagtgccccacccctgtctgcatcttgttctccct
gcttattcctcactaagtagtgggggaggtggaatgttagcaaggactag
agagtcctgtaccctgctcgtgtttcctcccacacctgtcccttctcagg
taatcaagcctcctccattctgtggtagctgggcagcaggtctccttggg
gactcctttgcagatagtgcagcagcttcaatgtagtcttgtctcatcca
gagatgccacggtacagcctaggggcagtggattgaagccagaagtgagg
agagaggtctgggttgggctctgtgggctctgccttttattttgttttgt
tttgtttttgtttttctgaactacccatggttcccctcactatcaccacc
aaccaagccctatctactccccaagggggagatgtgggatgggcttggtc
atggtgtgcttcttggaggctcttttgcttccctgtgaatttctacaaga
ccctgtactggtttcacttgcttgtctgccctctctctgtaccctgctcc
gtgcaggtggatgggcatcagatcttctacactacatctggcagtgtgag
agttaatgcctcatcccttggctcctggacagattacagttttcagatct
gctacaagagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_118757795_118758877
seq2: B6Ng01-054K24.b_46_1122

seq1  GAATTCCATACTTGTGATCTGCACTCCTGTCACTTCCCAAACATAAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACTTGTGATCTGCACTCCTGTCACTTCCCAAACATAAGAAC  50

seq1  CACAAAGCCTGGCGTGTGGTTGTACGCAGTGGCTACTGCTGCTAAAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCCTGGCGTGTGGTTGTACGCAGTGGCTACTGCTGCTAAAACAG  100

seq1  AGAGAAGGATGCACAGAAGGTGTCTAACAAGGGTGATGACAAGCAGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGATGCACAGAAGGTGTCTAACAAGGGTGATGACAAGCAGAGCC  150

seq1  GCACCAAGAGGGAGGGCAGGCAGGAGCACAATATTCCTAGCTGCTGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAGAGGGAGGGCAGGCAGGAGCACAATATTCCTAGCTGCTGTCAC  200

seq1  CTTCTACCCTTACTTAGAAGTCATCTATAGGATTCAATCTAGGTTGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACCCTTACTTAGAAGTCATCTATAGGATTCAATCTAGGTTGCTAA  250

seq1  GTGCTGAGGTTGACAGATACAGGTTCAAGCCACCCAAACACCCTTGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGGTTGACAGATACAGGTTCAAGCCACCCAAACACCCTTGTACC  300

seq1  CACAAAGCCTGGCTCTGGGGCAAATTGAGTCACAGGCTCCTCATGGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCCTGGCTCTGGGGCAAATTGAGTCACAGGCTCCTCATGGGCAC  350

seq1  AGCTTCCCAGCAGGACCAAGGAGAACACGCAGGAAGACAGGCTGCCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCAGCAGGACCAAGGAGAACACGCAGGAAGACAGGCTGCCTGCC  400

seq1  TGCTGTACTAGCCTGGGGCATGCTCTTTAGGAAGAGCCTCTGACCTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTACTAGCCTGGGGCATGCTCTTTAGGAAGAGCCTCTGACCTGCAG  450

seq1  CACCCATCAGCTTTAAAGAGGAACTGGGCCAGCATGGGCCCCTTGGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATCAGCTTTAAAGAGGAACTGGGCCAGCATGGGCCCCTTGGCCAT  500

seq1  GGATCAGGGCCAACCTGCAATGACAGGACAGGGAACTCTGAAGGCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGGGCCAACCTGCAATGACAGGACAGGGAACTCTGAAGGCCAGAA  550

seq1  AAGACTGGGGACCCAAATGGCTCCAGGGTTTCTTTCCACCCCACCCCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGGGGACCCAAATGGCTCCAGGGTTTCTTTCCACCCCACCCCCAA  600

seq1  GATGAAGGAAACAAGACACAGTAGTTCCTCCCCTGATCAAGAATCAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGGAAACAAGACACAGTAGTTCCTCCCCTGATCAAGAATCAGAAA  650

seq1  AACTGATCGGCAGAGGGGCGGGGCAGTCTGTTGGTCAGGGAGTAGGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATCGGCAGAGGGGCGGGGCAGTCTGTTGGTCAGGGAGTAGGGGAG  700

seq1  GCGGCAGAGGGAGTTGCTCGCTGGGTTGACTCCCTTTCTACCATCAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCAGAGGGAGTTGCTCGCTGGGTTGACTCCCTTTCTACCATCAAGGG  750

seq1  CTCTGCAATCTTATTCTCTCTAGAATTCCCTTCAGTGTGCTCAGGGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAATCTTATTCTCTCTAGAATTCCCTTCAGTGTGCTCAGGGACTT  800

seq1  CCAGGGCAGCTATTTGAGAGAAAGAAGACATGGTTGCTGTCTGAAGCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAGCTATTTGAGAGAAAGAAGACATGGTTGCTGTCTGAAGCAGC  850

seq1  GAGAAGGTCTCTCCAGAGACTGCTGAGTCGGGGAAGCATAGCAAATAGTT  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGAAGGTCTCTCCAGAGACTGCTGAGTCGGGGAAGCATAGC-AATAGTT  899

seq1  TAGTGCCCTGGAGCCTCCGCTTGGCTTTGGGCTATGCATACAGCCCCCTC  950
      |||||||||||||||||||||||||||| |||||||||||||| || |||
seq2  TAGTGCCCTGGAGCCTCCGCTTGGCTTT-GGCTATGCATACAG-CCTCTC  947

seq1  CCCTCATAATAATGCATCCGGCATCCAAGTCCCTTCACCTGCACGTGCCG  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCTCATAATAATGCATCC-GCATCCAAGTCCCTTCACCTGCACGTGCCG  996

seq1  TGTGCACACCCCTCTCCACACTGTATACTGAGCATCCG-AGAAACAGCCT  1049
      ||||||||||||||| |||||||| ||||||||||||| |||||||||||
seq2  TGTGCACACCCCTCT-CACACTGT-TACTGAGCATCCGAAGAAACAGCCT  1044

seq1  CCCCCCAGCCCACACCTCCAATGGGCTTCGCCTT  1083
       |||||||||||||||||||||||||||||||||
seq2  -CCCCCAGCCCACACCTCCAATGGGCTTCGCCTT  1077

seq1: chr6_118888846_118889805
seq2: B6Ng01-054K24.g_66_1027 (reverse)

seq1  AGCTCTTTGGTAGCAGATCTGGAAAACTGTTATTCTGTCCACGAAGCCCA  50
      |||||||  ||||||||||| |||||||| || |||||||| | |||| |
seq2  AGCTCTT--GTAGCAGATCT-GAAAACTG-TAATCTGTCCA-GGAGCCAA  45

seq1  GGGATGAGGCATTTAACTCCTCACACTGCCAGATGTAGTGTGGGAGTTCT  100
      ||||||||||| |||||| |||||||||||||||||||||| | || |||
seq2  GGGATGAGGCA-TTAACT-CTCACACTGCCAGATGTAGTGTAGAAGATCT  93

seq1  GATG-CCATC--ACTGCACGGAGCAGGGTACAGAGAGAGGGCAGAC-AGC  146
      |||| |||||   ||||||||||||||||||||||||||||||||| |||
seq2  GATGCCCATCCACCTGCACGGAGCAGGGTACAGAGAGAGGGCAGACAAGC  143

seq1  AAGTGAAA-CAGTACAGGGTCTTGTAGAAATTCACAGGGAAGC-AAAGAG  194
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  AAGTGAAACCAGTACAGGGTCTTGTAGAAATTCACAGGGAAGCAAAAGAG  193

seq1  CCTCCAAGAAGCACACCATGACCAAGCCCAT-CCACATCT-CCCCTTGGG  242
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  CCTCCAAGAAGCACACCATGACCAAGCCCATCCCACATCTCCCCCTTGGG  243

seq1  GAGTAGATAGGGCTTGGTTGGTGGTGATAGTGAGGGGAACCATGGGTAGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGATAGGGCTTGGTTGGTGGTGATAGTGAGGGGAACCATGGGTAGT  293

seq1  TCAGAAAAAC-AAAACAAAACAAAACAAAATAAAAGGCAGAGCCCACAGA  341
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAACAAAAACAAAACAAAACAAAATAAAAGGCAGAGCCCACAGA  343

seq1  GCCCAACCCAGACCTCTCTCCTCACTTCTGGCTTCAATCCACTGCCCCTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACCCAGACCTCTCTCCTCACTTCTGGCTTCAATCCACTGCCCCTA  393

seq1  GGCTGTACCGTGGCATCTCTGGATGAGACAAGACTACATTGAAGCTGCTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTACCGTGGCATCTCTGGATGAGACAAGACTACATTGAAGCTGCTG  443

seq1  CACTATCTGCAAAGGAGTCCCCAAGGAGACCTGCTGCCCAGCTACCACAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCTGCAAAGGAGTCCCCAAGGAGACCTGCTGCCCAGCTACCACAG  493

seq1  AATGGAGGAGGCTTGATTACCTGAGAAGGGACAGGTGTGGGAGGAAACAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGAGGCTTGATTACCTGAGAAGGGACAGGTGTGGGAGGAAACAC  543

seq1  GAGCAGGGTACAGGACTCTCTAGTCCTTGCTAACATTCCACCTCCCCCAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGTACAGGACTCTCTAGTCCTTGCTAACATTCCACCTCCCCCAC  593

seq1  TACTTAGTGAGGAATAAGCAGGGAGAACAAGATGCAGACAGGGGTGGGGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTGAGGAATAAGCAGGGAGAACAAGATGCAGACAGGGGTGGGGC  643

seq1  ACTTTTCTTCCTTCATGTAGAAGGATGCTCCAAGCACCTATGGATTCAGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTTCCTTCATGTAGAAGGATGCTCCAAGCACCTATGGATTCAGA  693

seq1  GATACCCAGACCTGAGCTTTATGCCTGAAACAGGAATGGGCCAAGTGCTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCAGACCTGAGCTTTATGCCTGAAACAGGAATGGGCCAAGTGCTC  743

seq1  CAAATTGCTGTCTCCCAGGTCTGTAATCAAAAAGCTGTTGGTTACGAGCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGCTGTCTCCCAGGTCTGTAATCAAAAAGCTGTTGGTTACGAGCC  793

seq1  AAGAGTGGAGCTCTTCACCAAGAGAGCTAGACAGTGGTGGTCATTAGCCG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGAGCTCTTCACCAAGAGAGCTAGACAGTGGTGGTCATTAGCCG  843

seq1  TCCCATCCTCAGATCTGTACAGGTCAGTATGACCCTACCTCCATCACATC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCCTCAGATCTGTACAGGTCAGTATGACCCTACCTCCATCACATC  893

seq1  GATCAAGGCCTCATGCCACGATGCCAGCAGAGATAGCAATATCCAGCCTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGGCCTCATGCCACGATGCCAGCAGAGATAGCAATATCCAGCCTC  943

seq1  CCTCATCGGCCTGGAATTC  960
      |||||||||||||||||||
seq2  CCTCATCGGCCTGGAATTC  962