BAC Information

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BAC

Clone NameB6Ng01-054M04
Chromosome6 (Build37)
Map Location 49,316,372 - 49,317,477
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126
Downstream geneD330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054M04.bB6Ng01-054M04.g
ACCDH877417DH877418
length1,095407
definitionDH877417|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M04, 5' end.DH877418|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttctcctgagtaacggttaatttcttactccttttcagcttg
ccagaacaacttatagctaaattactaacggatgataattccatttttat
ataaaatgcgtggagattctttttaaatgttgaaacagacttatcttgga
gtcaggtgtatagtttggcagtacagagcttacctagcagctcaaaggct
ttgtgctcctacccggaaggcaagaacttggctgaattgtttctgcttgt
tcttccttaacctgttattttctttggagaacatttttttttccttgtca
cttgcactggtactcaggattgctggttttatattttattattttccagt
ggcatcgagacttgaacccagggtctcagtatgctaaactcatgctgtcc
aactaagcttctatgctcagttctcagcctcaaccgtaatactgaaaaca
tggacgttgacacccctcccccacacttcagagatgtactgattcgaagt
gtgtgattgtgaatgggtgcgtgcagcagtgtaaacaagctctgaggcca
gtgggcaagaggaaagggttgggtgtcttcctctatcatgctccatttaa
tcctttcatgtagtctctccctgaacccagggttgggattttcttgtcta
ggctgaaagccagcaaacctcattgatttttctgtctccacctaccttga
aactggggtattaagagtctgagatgcctggttctttatgtgggtgctgg
gatctgaactctggtacttatgatcgcacagcaagcactcttagctaccg
ctccaagtggccaattctccaagactacgtacatttcgagagattgatta
aatgggaagaggtatataaaccctgttttgagaacccattgtatcctggc
actgcacttattcttaaggagactctgggaatgaagcagtgaagagcacg
aagtttgagtgggcaaacagcatctgtttgcagccttgggctatgcagga
gaagccaatttgtaggctcagtagcgtaaggtggcgagcctcagctaatt
aagcctcagacccttaaagaatcgccagtgactgtgggcccggaa
cattagacaaagcatcagaaaacagtcaggagaaaatgggatgacacagc
aagggtcctgaaagggggggggggggaatctccaacaaaataatcaaaat
aagtgaggaggttgggcattgtggtgcattcctttagtcccagcacttgg
gaggcagaggcaggcaagtctctgagattgaggccagcctggtctatgtg
gtaagttctagaataggcagggctatacagagaaaccctgtctcaaaaaa
gagagagagagagagagagagagagactgagatttgatattctgttatac
ttatattctttttatataaggtaatgtaatttattataggatatgatgga
agggattgtaaggaaaggaaataaattatttttaggggtgttaatctatc
ctaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_49316372_49317477
seq2: B6Ng01-054M04.b_43_1137

seq1  GAATTCTTTTCTCCTGAGTAACGGTTAATTTCTTACTCCTTTTCAGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTCCTGAGTAACGGTTAATTTCTTACTCCTTTTCAGCTTG  50

seq1  CCAGAACAACTTATAGCTAAATTACTAACGGATGATAATTCCATTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACAACTTATAGCTAAATTACTAACGGATGATAATTCCATTTTTAT  100

seq1  ATAAAATGCGTGGAGATTCTTTTTAAATGTTGAAACAGACTTATCTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGCGTGGAGATTCTTTTTAAATGTTGAAACAGACTTATCTTGGA  150

seq1  GTCAGGTGTATAGTTTGGCAGTACAGAGCTTACCTAGCAGCTCAAAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTGTATAGTTTGGCAGTACAGAGCTTACCTAGCAGCTCAAAGGCT  200

seq1  TTGTGCTCCTACCCGGAAGGCAAGAACTTGGCTGAATTGTTTCTGCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTCCTACCCGGAAGGCAAGAACTTGGCTGAATTGTTTCTGCTTGT  250

seq1  TCTTCCTTAACCTGTTATTTTCTTTGGAGAACATTTTTTTTTCCTTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTAACCTGTTATTTTCTTTGGAGAACATTTTTTTTTCCTTGTCA  300

seq1  CTTGCACTGGTACTCAGGATTGCTGGTTTTATATTTTATTATTTTCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACTGGTACTCAGGATTGCTGGTTTTATATTTTATTATTTTCCAGT  350

seq1  GGCATCGAGACTTGAACCCAGGGTCTCAGTATGCTAAACTCATGCTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCGAGACTTGAACCCAGGGTCTCAGTATGCTAAACTCATGCTGTCC  400

seq1  AACTAAGCTTCTATGCTCAGTTCTCAGCCTCAACCGTAATACTGAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGCTTCTATGCTCAGTTCTCAGCCTCAACCGTAATACTGAAAACA  450

seq1  TGGACGTTGACACCCCTCCCCCACACTTCAGAGATGTACTGATTCGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGTTGACACCCCTCCCCCACACTTCAGAGATGTACTGATTCGAAGT  500

seq1  GTGTGATTGTGAATGGGTGCGTGCAGCAGTGTAAACAAGCTCTGAGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATTGTGAATGGGTGCGTGCAGCAGTGTAAACAAGCTCTGAGGCCA  550

seq1  GTGGGCAAGAGGAAAGGGTTGGGTGTCTTCCTCTATCATGCTCCATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAAGAGGAAAGGGTTGGGTGTCTTCCTCTATCATGCTCCATTTAA  600

seq1  TCCTTTCATGTAGTCTCTCCCTGAACCCAGGGTTGGGATTTTCTTGTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCATGTAGTCTCTCCCTGAACCCAGGGTTGGGATTTTCTTGTCTA  650

seq1  GGCTGAAAGCCAGCAAACCTCATTGATTTTTCTGTCTCCACCTACCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAAGCCAGCAAACCTCATTGATTTTTCTGTCTCCACCTACCTTGA  700

seq1  AACTGGGGTATTAAGAGTCTGAGATGCCTGGTTCTTTATGTGGGTGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGGTATTAAGAGTCTGAGATGCCTGGTTCTTTATGTGGGTGCTGG  750

seq1  GATCTGAACTCTGGTACTTATGATCGCACAGCAAGCACTCTTAGCTACCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAACTCTGGTACTTATGATCGCACAGCAAGCACTCTTAGCTACCG  800

seq1  CTCCAAGTGGCCAATTCTCCAAGACTACGTACATTTCGAGAGATTGATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGTGGCCAATTCTCCAAGACTACGTACATTTCGAGAGATTGATTA  850

seq1  AATGGGAAGAGGTATATAAACCCTGTTTTGAGAACCCATTGTATCCTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAGAGGTATATAAACCCTGTTTTGAGAACCCATTGTATCCTGGC  900

seq1  ACTGCACTTATTCTTAAGGAGACTCTGGGAATGAAGCAGTGAAGAGCACG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACTTATTCTTAAGGAGACTCTGGGAATGAAGCAGTGAAGAGCACG  950

seq1  AAGTTTGAAGTGGGCAAACAGCATCTGTTTTGCAGCCTTGGGCTATGCAG  1000
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGTTTG-AGTGGGCAAACAGCATCTG-TTTGCAGCCTTGGGCTATGCAG  998

seq1  GAGAAGCCAATTTGTAGGGCTCAGGTAGCGGTAGGGTGGCGAAGCTCAAG  1050
      |||||||||||||||| |||||| ||||| ||| ||||||||  ||| ||
seq2  GAGAAGCCAATTTGTA-GGCTCA-GTAGC-GTAAGGTGGCGAGCCTC-AG  1044

seq1  CTAAATTAAG-CTCAAGGACCCTTAGAGGATCGCCAGGTAGACTGTGGGC  1099
      || ||||||| ||||  |||||||| || ||||||||   ||||||||||
seq2  CT-AATTAAGCCTCA--GACCCTTAAAGAATCGCCAG--TGACTGTGGGC  1089

seq1  CACGGAA  1106
      | |||||
seq2  C-CGGAA  1095