BAC Information

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BAC

Clone NameB6Ng01-054N16
Chromosome6 (Build37)5 (Build37)
Map Location 18,835,442 - 18,835,96858,186,598 - 58,187,679
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054N16.bB6Ng01-054N16.g
ACCDH877484DH877485
length9431,073
definitionDH877484|Mus musculus domesticus DNA, BAC clone: B6Ng01-054N16, 5' end.DH877485|Mus musculus domesticus DNA, BAC clone: B6Ng01-054N16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(58,186,598 - 58,187,679)
sequence
gaattgtttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
gtatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgaagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgatgat
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacaagataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagacattttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagttttatcatac
agatctttcacttccttagttagagtcacgccagatatttata
gaattctgaggccagaggatttctgtggtttaatgccagcatgagcatac
agactatctcacaaacaaaatgtagatggatagttaagtctacagatagg
taggtaggtaggtaggtatgtagataatcagacagacaagtatgcagatg
gatgatggacagacagatgtgttaatgtgagtatgcacatgcgcatgcaa
ctttgtttttctttaatgtaagataacacttagatgcatttaatatatga
ctgacagcagtatatattacatgcagacttcttcagacatgtggattatt
ggaagtagcttggttgtaccttgtgtcatctgaatgagcctttctttaat
aacagcttttctttagttgattaatacatggcagataatttgagcctatc
atatgtgaacacatagaaaatgttatgggcctcatttttataatctgatt
agtgtgttattatcttcatgtaaacccaagaggaaatgaataattttgcc
aaagttgaccaaagattggtcaataattaatagactaaactgttcattgt
tcgacttataaacttttaggtttttgtttgttggtttgtttgtttttttt
ttcgactgggtttcctatagcacaagtgggccatgaaatggttgaggtct
gggacaaccctgaacttcttcttttttttttttttccaaaaacaattttt
attagatattttcttcatttacatttcaaatgctatctcaaaagtctcct
ataccctctcacaacccagctccccaacccacccactcccacttcctggt
cctggcattcccctgtactggggccttggagcacctgaatccctagactg
tatgctaacactctgatttagtaagagctaaggatcaaactcagaacctt
agtctagcaacagatactcaggcaactgagcgatattcctcatcaactat
gacttggatttacagctatgcttgatgtcttatgcctgtaaacctagcac
ggacagcctagtcaggaggaattgtgatgagttctagaaagctggatgac
ttatggagatcaggcaggactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-054N16.b_46_573 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCTTGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| |||||||||||| || ||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGATCATCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| |||||||||||||||||||||||||||||||||| |||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTTCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATACGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      |||||||||||||||||||||| |||||
seq2  ATGGGGCTCAGAACTGAACAAACAATTC  528

seq1: chr5_58186598_58187679
seq2: B6Ng01-054N16.g_68_1140 (reverse)

seq1  AGAGTCCTGGCCTGAATCTCACTAAGTCACTCAGGCTTTCTTAGAACTCA  50
      |||||||| ||||| |||||  ||||||| ||  |||||| |||||||||
seq2  AGAGTCCT-GCCTG-ATCTCCATAAGTCA-TCCAGCTTTC-TAGAACTCA  46

seq1  TCACAA-TCCTCCTGACTTAGCCTGGTCCGTGCTAGGTTTACAGGCATAA  99
      |||||| |||||||||| ||| || |||||||||||||||||||||||||
seq2  TCACAATTCCTCCTGAC-TAGGCT-GTCCGTGCTAGGTTTACAGGCATAA  94

seq1  GACATCAAGCATAGCTGTAAATTCAAGTCATAGTTGATTGAGGGAATATC  149
      |||||||||||||||||||||| |||||||||||||| ||| ||||||||
seq2  GACATCAAGCATAGCTGTAAATCCAAGTCATAGTTGA-TGA-GGAATATC  142

seq1  GCTCAGTTGCCTGAGTATCTTGTTGCTAGACTAAGGTTCTGAGTTTGACT  199
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  GCTCAGTTGCCTGAGTATC-TGTTGCTAGACTAAGGTTCTGAGTTTGA-T  190

seq1  CCTTAGCTCTTACTAAATCAGAGTGTTAGCATACAGTCTAGGGATTCAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCTCTTACTAAATCAGAGTGTTAGCATACAGTCTAGGGATTCAGG  240

seq1  TGCTCCAAGGCCCCAGTACAGGGGAATGCCAGGACCAGGAAGTGGGAGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAAGGCCCCAGTACAGGGGAATGCCAGGACCAGGAAGTGGGAGTG  290

seq1  GGTGGGTTGGGGAGCTGGGTTGTGAGAGGGTATAGGAGACTTTTGAGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTTGGGGAGCTGGGTTGTGAGAGGGTATAGGAGACTTTTGAGATA  340

seq1  GCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAATTGTTTTTGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAATTGTTTTTGGAA  390

seq1  AAAAAAAAAAAAGAAGAAGTTCAGGGTTGTCCCAGACCTCAACCATTTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGAAGAAGTTCAGGGTTGTCCCAGACCTCAACCATTTCA  440

seq1  TGGCCCACTTGTGCTATAGGAAACCCAGTCGAAAAAAAAAACAAACAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCACTTGTGCTATAGGAAACCCAGTCGAAAAAAAAAACAAACAAAC  490

seq1  CAACAAACAAAAACCTAAAAGTTTATAAGTCGAACAATGAACAGTTTAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACAAAAACCTAAAAGTTTATAAGTCGAACAATGAACAGTTTAGT  540

seq1  CTATTAATTATTGACCAATCTTTGGTCAACTTTGGCAAAATTATTCATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAATTATTGACCAATCTTTGGTCAACTTTGGCAAAATTATTCATTT  590

seq1  CCTCTTGGGTTTACATGAAGATAATAACACACTAATCAGATTATAAAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGGTTTACATGAAGATAATAACACACTAATCAGATTATAAAAAT  640

seq1  GAGGCCCATAACATTTTCTATGTGTTCACATATGATAGGCTCAAATTATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCATAACATTTTCTATGTGTTCACATATGATAGGCTCAAATTATC  690

seq1  TGCCATGTATTAATCAACTAAAGAAAAGCTGTTATTAAAGAAAGGCTCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGTATTAATCAACTAAAGAAAAGCTGTTATTAAAGAAAGGCTCAT  740

seq1  TCAGATGACACAAGGTACAACCAAGCTACTTCCAATAATCCACATGTCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGACACAAGGTACAACCAAGCTACTTCCAATAATCCACATGTCTG  790

seq1  AAGAAGTCTGCATGTAATATATACTGCTGTCAGTCATATATTAAATGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTCTGCATGTAATATATACTGCTGTCAGTCATATATTAAATGCAT  840

seq1  CTAAGTGTTATCTTACATTAAAGAAAAACAAAGTTGCATGCGCATGTGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGTTATCTTACATTAAAGAAAAACAAAGTTGCATGCGCATGTGCA  890

seq1  TACTCACATTAACACATCTGTCTGTCCATCATCCATCTGCATACTTGTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACATTAACACATCTGTCTGTCCATCATCCATCTGCATACTTGTCT  940

seq1  GTCTGATTATCTACATACCTACCTACCTACCTACCTATCTGTAGACTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATTATCTACATACCTACCTACCTACCTACCTATCTGTAGACTTAA  990

seq1  CTATCCATCTACATTTTGTTTGTGAGATAGTCTGTATGCTCATGCTGGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCATCTACATTTTGTTTGTGAGATAGTCTGTATGCTCATGCTGGCA  1040

seq1  TTAAACCACAGAAATCCTCTGGCCTCAGAATTC  1082
      |||||||||||||||||||||||||||||||||
seq2  TTAAACCACAGAAATCCTCTGGCCTCAGAATTC  1073