BAC Information

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BAC

Clone NameB6Ng01-054P08
Chromosome6 (Build37)
Map Location 16,098,899 - 16,268,984
singlet/doubletdoublet
Overlap geneLOC100041116
Upstream geneFoxp2, Mdfic
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054P08.bB6Ng01-054P08.g
ACCDH877558DH877559
length1,130677
definitionDH877558|Mus musculus domesticus DNA, BAC clone: B6Ng01-054P08, 5' end.DH877559|Mus musculus domesticus DNA, BAC clone: B6Ng01-054P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,098,899 - 16,100,040)(16,268,308 - 16,268,984)
sequence
gaattcttgagttattcaccgaaaactgaactatgagagcaaatacaggg
tcatgttattggaaatatgcggtattattttagtaagtgctcaacacaga
tgatagcattcaaagctgtaggttttatcttctgtgataaagataggcaa
aagcatatgacacataggcaaatgatattacagcagtctctgtgccctag
tccccagagactagaattgtgtgagtctgtaaagcaatgggaaattaagg
ttgcaggaagaattaaatacgctaataatgtaaccttaaaataagcactc
tgagaagctactcatgctctgccttcatggatatactggtagcactaaat
agagtctgtgtttttcaaaaagagtacgttaagttaggagcagatagtca
tagaggaaataagagaggaatctctgtgaagagaatacaggataattggt
caaaacatgtgcacatctgcaattctcaaacaataacaattattattaca
aaagatattgtcttggattgtcggggttggtcccgtgtaatcatgaatgt
ctaaaagagagacagtaggagggggaagggcaattgtggaacagttcaat
gtgagacaggatctgtgaagcagctgtccatgttcactcaagctcttgta
agcagaccaataagcctgtttgtttacaaagctctacttggcagaatctt
cctttgatctgttaatcccttcctgatttgagatgatagacttttcttat
acatttatccaggaaagacaaacaagaggaacagagtatttcacaactag
gaaaatacagaatgataatctttagtgaacacagccaacatcaacacgaa
ggcaacagtttatacctttacaatgagcataagtacagcaagataaaact
gaggctgagaccagaaatctgctcaaggccaggttggactactagacttc
accctcctcctccaaaaataagttaaaagcaacattgccagataaattac
aaataagtataactgatctaacagaaacttgtaaaaccataggtcatcat
caatgtgcatttccctttcataatcatatgacaagctttatagctctttc
gcaatacactaactgaggagatccttgttt
gaattccagtgatcacagaagatgaaaaaggagttgaaaataaaaacaga
agcaactctttggaaaaacacaagtagtgtttcacagggtctacctgtct
tgtgattacaacataattacaacaattttgcatttttaagatcacatggc
tggaatttaacccttcgataatagaatatgtttgaaaggcaaatagaacc
tgctttattcataagaactactgtatatgttgctaaggtacaagaaaaca
aatatatgcaatagagatgtgataaaaatgtttcgttctttaaatttcaa
atttagactttccagttctatggggaagagaaatctaagaaatttaatat
caaagaggcattgttgacggtgtctaaattatcttgcatataatatacac
ttaagtgaatgaagttattaaaaagagaaagaaagaagttctgagtcagt
gagtgtgttattggataaccgattgatctggcatccttgtcaattgagaa
gtaagaaattagagatgcatttccctgattctgagagatcgagggtgtgt
ctctgctcaccttgctccgagatacagaaaataacgcaaactggccctct
caggctgagtagtacactttgacagtgtttccccggcctacaaggaaggt
ggatctgtggagtcggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16098899_16100040
seq2: B6Ng01-054P08.b_45_1174

seq1  GAATTCTTGAGTTATTCACCGAAAACTGAACTATGAGAGCAAATACAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGTTATTCACCGAAAACTGAACTATGAGAGCAAATACAGGG  50

seq1  TCATGTTATTGGAAATATGCGGTATTATTTTAGTAAGTGCTCAACACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTATTGGAAATATGCGGTATTATTTTAGTAAGTGCTCAACACAGA  100

seq1  TGATAGCATTCAAAGCTGTAGGTTTTATCTTCTGTGATAAAGATAGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCATTCAAAGCTGTAGGTTTTATCTTCTGTGATAAAGATAGGCAA  150

seq1  AAGCATATGACACATAGGCAAATGATATTACAGCAGTCTCTGTGCCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATGACACATAGGCAAATGATATTACAGCAGTCTCTGTGCCCTAG  200

seq1  TCCCCAGAGACTAGAATTGTGTGAGTCTGTAAAGCAATGGGAAATTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGAGACTAGAATTGTGTGAGTCTGTAAAGCAATGGGAAATTAAGG  250

seq1  TTGCAGGAAGAATTAAATACGCTAATAATGTAACCTTAAAATAAGCACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGAAGAATTAAATACGCTAATAATGTAACCTTAAAATAAGCACTC  300

seq1  TGAGAAGCTACTCATGCTCTGCCTTCATGGATATACTGGTAGCACTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCTACTCATGCTCTGCCTTCATGGATATACTGGTAGCACTAAAT  350

seq1  AGAGTCTGTGTTTTTCAAAAAGAGTACGTTAAGTTAGGAGCAGATAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGTGTTTTTCAAAAAGAGTACGTTAAGTTAGGAGCAGATAGTCA  400

seq1  TAGAGGAAATAAGAGAGGAATCTCTGTGAAGAGAATACAGGATAATTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAATAAGAGAGGAATCTCTGTGAAGAGAATACAGGATAATTGGT  450

seq1  CAAAACATGTGCACATCTGCAATTCTCAAACAATAACAATTATTATTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATGTGCACATCTGCAATTCTCAAACAATAACAATTATTATTACA  500

seq1  AAAGATATTGTCTTGGATTGTCGGGGTTGGTCCCGTGTAATCATGAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATTGTCTTGGATTGTCGGGGTTGGTCCCGTGTAATCATGAATGT  550

seq1  CTAAAAGAGAGACAGTAGGAGGGGGAAGGGCAATTGTGGAACAGTTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGAGAGACAGTAGGAGGGGGAAGGGCAATTGTGGAACAGTTCAAT  600

seq1  GTGAGACAGGATCTGTGAAGCAGCTGTCCATGTTCACTCAAGCTCTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACAGGATCTGTGAAGCAGCTGTCCATGTTCACTCAAGCTCTTGTA  650

seq1  AGCAGACCAATAAGCCTGTTTGTTTACAAAGCTCTACTTGGCAGAATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACCAATAAGCCTGTTTGTTTACAAAGCTCTACTTGGCAGAATCTT  700

seq1  CCTTTGATCTGTTAATCCCTTCCTGATTTGAGATGATAGACTTTTCTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATCTGTTAATCCCTTCCTGATTTGAGATGATAGACTTTTCTTAT  750

seq1  ACATTTATCCAGGAAAGACAAACAAGAGGAACAGAGTATTTCACAACTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATCCAGGAAAGACAAACAAGAGGAACAGAGTATTTCACAACTAG  800

seq1  GAAAATACAGAATGATAATCTTTAGTGAACACAGCCAACATCAACACGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACAGAATGATAATCTTTAGTGAACACAGCCAACATCAACACGAA  850

seq1  GGCAACAGTTTATACCTTTACAATGAGCATAAGTACAGCAAGATAAAAAC  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCAACAGTTTATACCTTTACAATGAGCATAAGTACAGCAAGAT-AAAAC  899

seq1  TGAGGCTGAGACCAGAAATCTGCTCAAGGCCAGGTTGGACTACTAGACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGAGACCAGAAATCTGCTCAAGGCCAGGTTGGACTACTAGACTT  949

seq1  CACCCTCCTCCTCCAAAAATAAGTTAAAAAGCAACATTGCCAGATAAATT  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACCCTCCTCCTCCAAAAATAAGTT-AAAAGCAACATTGCCAGATAAATT  998

seq1  ACAAATAAGTATAAACTGATCTAACAGAAACTTGTAAAAACCAATAGTCA  1050
      |||||||||||| ||||||||||||||||||||||||||  | ||||   
seq2  ACAAATAAGTAT-AACTGATCTAACAGAAACTTGTAAAA--CCATAGGTC  1045

seq1  ATCATCAAATGTGCAATTTTCCCTTTCATATTCATATTGAC-AGCTTTAT  1099
      |||||| ||||||||  ||||||||||||| ||||| |||| ||||||||
seq2  ATCATC-AATGTGCA--TTTCCCTTTCATAATCATA-TGACAAGCTTTAT  1091

seq1  AGCCTCCTCTTCGCAATACCAACT-ACTGA-GAGATCCTCTGTTT  1142
      || |||   ||||||||||  ||| ||||| |||||||| |||||
seq2  AG-CTC--TTTCGCAATAC--ACTAACTGAGGAGATCCT-TGTTT  1130

seq1: chr6_16268308_16268984
seq2: B6Ng01-054P08.g_69_745 (reverse)

seq1  CCCCCCCCCCCCCGACTCCACAGATCCACCTTCCTTGTAGGCCGGGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCGACTCCACAGATCCACCTTCCTTGTAGGCCGGGGAAA  50

seq1  CACTGTCAAAGTGTACTACTCAGCCTGAGAGGGCCAGTTTGCGTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCAAAGTGTACTACTCAGCCTGAGAGGGCCAGTTTGCGTTATTTT  100

seq1  CTGTATCTCGGAGCAAGGTGAGCAGAGACACACCCTCGATCTCTCAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTCGGAGCAAGGTGAGCAGAGACACACCCTCGATCTCTCAGAAT  150

seq1  CAGGGAAATGCATCTCTAATTTCTTACTTCTCAATTGACAAGGATGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAATGCATCTCTAATTTCTTACTTCTCAATTGACAAGGATGCCAG  200

seq1  ATCAATCGGTTATCCAATAACACACTCACTGACTCAGAACTTCTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCGGTTATCCAATAACACACTCACTGACTCAGAACTTCTTTCTTT  250

seq1  CTCTTTTTAATAACTTCATTCACTTAAGTGTATATTATATGCAAGATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTAATAACTTCATTCACTTAAGTGTATATTATATGCAAGATAAT  300

seq1  TTAGACACCGTCAACAATGCCTCTTTGATATTAAATTTCTTAGATTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACACCGTCAACAATGCCTCTTTGATATTAAATTTCTTAGATTTCTC  350

seq1  TTCCCCATAGAACTGGAAAGTCTAAATTTGAAATTTAAAGAACGAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCATAGAACTGGAAAGTCTAAATTTGAAATTTAAAGAACGAAACAT  400

seq1  TTTTATCACATCTCTATTGCATATATTTGTTTTCTTGTACCTTAGCAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCACATCTCTATTGCATATATTTGTTTTCTTGTACCTTAGCAACA  450

seq1  TATACAGTAGTTCTTATGAATAAAGCAGGTTCTATTTGCCTTTCAAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTAGTTCTTATGAATAAAGCAGGTTCTATTTGCCTTTCAAACAT  500

seq1  ATTCTATTATCGAAGGGTTAAATTCCAGCCATGTGATCTTAAAAATGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTATCGAAGGGTTAAATTCCAGCCATGTGATCTTAAAAATGCAA  550

seq1  AATTGTTGTAATTATGTTGTAATCACAAGACAGGTAGACCCTGTGAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTGTAATTATGTTGTAATCACAAGACAGGTAGACCCTGTGAAACA  600

seq1  CTACTTGTGTTTTTCCAAAGAGTTGCTTCTGTTTTTATTTTCAACTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGTGTTTTTCCAAAGAGTTGCTTCTGTTTTTATTTTCAACTCCTT  650

seq1  TTTCATCTTCTGTGATCACTGGAATTC  677
      |||||||||||||||||||||||||||
seq2  TTTCATCTTCTGTGATCACTGGAATTC  677