BAC Information

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BAC

Clone NameB6Ng01-055B06
Chromosome6 (Build37)
Map Location 53,341,844 - 53,430,556
singlet/doubletdoublet
Overlap genenone
Upstream gene1700094M24Rik, EG545841, Hibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
Downstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055B06.bB6Ng01-055B06.g
ACCDH877640DH877641
length8751,045
definitionDH877640|Mus musculus domesticus DNA, BAC clone: B6Ng01-055B06, 5' end.DH877641|Mus musculus domesticus DNA, BAC clone: B6Ng01-055B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,429,681 - 53,430,556)(53,341,844 - 53,342,896)
sequence
gaattctccatgtaagtagccaaggctatacttaaatttcagagcctcct
gcctcctcttcccaagtgcttggattagcaatgtgtaccaccaaacccag
ttttgccaaatagctttgatctactttgctcaattcttcaagatctctac
tgccagcagaagtttcgtgtataaatttccatcttcccctttccgtcacc
tcatgctcttgacatagcatagacaatagcacatatttcaggagaacttg
ccagggaccaagtgcttatcatttacttcagcctacattactaatacctt
tgcaagcagtctccgtcactgttgccacagcagaggtgaggaatccgaga
cctaggaagggtgtgacgcctttcctctggccatataacttccaagtgct
gtgttcaggattcacatgtgtgggactcacactggagactgggcccttga
ctctttgctgccactgctaccttgtacctccctgctgtatgcccagctgc
caacgtgccttcttgtttaccatcctctcactgcttcctcctctcatatt
gctcctgagttcatgactttctgctctccttatgtgtctctagatcattg
ccctttctcagttaggcacatgtaaatatggaaacactacatggagcctt
ggcctcatttccctccaccactgtcatctaggaaaaggagacatgaagga
aggaagctctctccccaggagagactgacatggcaactatctagaaactt
ctcagatggctgtctttaggacttcatccgttttctctctttggttcatt
tttcccttatcaatggacagagagaaatgaaagagaaagaaagagagaga
aagaaagaaagaaagaaagaaagaa
gaattcaggccctcaggcttgcatggcatctcccctgcccactctctgtc
caagtcttgaattggctcatcagtaaagttctacagaagggaagttctcg
ctcacttggggaattggcctttgatgtcctatgcttcttctttacatttc
cagctgtagggttagaagctctagacaccaggcagatagggagtggatgc
ttattagtctcagtgcccatcgaaacaattgcatcttattgattctgcct
ttaattctgatgtccttttccaaaataatctcagtgtgtctatggaatgt
aaggttagagcagatcacagccgggggcagaagaccccagtgtctgtatc
aatattacacagcaaattccagtctctaagatgacctctatttttgatac
caatacaagctcattgcttcataactcttctgtaagaaatctccaactct
gaaagcgtgttatgattctctagcaggcattacaaagctcagcttgcccg
tggcttagcactccgcagcctgtatcctgaagcctgtgcatcaggttcca
ttcaggaaatgttttagggagatgtcaatataccaagtgctacccaaggc
actgatgaagacactaatagatacaagtggttaaaacaaacaagcaaaca
agtacgcaaaatgtctcagctttcaggtgacttacttcttatggaccaga
cattgcatcagcgaaaaatgccccacaatgtactatggagttcaatgcca
aggagctgaggaagggctgggtgtgttcagagagggcatcccgacccagg
ggacctagagacccaagtagacaagtagacgttcttagccagaaaagatg
agttgtgaaaacagagactgagtgtgaaggcctaagactgagtgatggag
tgtgtgttgcagaagttgtcaggaagatgccctagagagttgggtatggg
aaggcagcccaggagggcgagggtgatgcagccttttggagtggtcagtt
tgactctgactctaatgggataggaagcataggcgattctgagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_53429681_53430556
seq2: B6Ng01-055B06.b_46_920 (reverse)

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTTTCTTTCTTCTTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTTTCTTTC-TCTTTCAT  49

seq1  TTCTCTCTGTCCATTGATAAGGGAAAAATGAACCAAAGAGAGAAAACGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTGTCCATTGATAAGGGAAAAATGAACCAAAGAGAGAAAACGGA  99

seq1  TGAAGTCCTAAAGACAGCCATCTGAGAAGTTTCTAGATAGTTGCCATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCCTAAAGACAGCCATCTGAGAAGTTTCTAGATAGTTGCCATGTC  149

seq1  AGTCTCTCCTGGGGAGAGAGCTTCCTTCCTTCATGTCTCCTTTTCCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTCCTGGGGAGAGAGCTTCCTTCCTTCATGTCTCCTTTTCCTAGA  199

seq1  TGACAGTGGTGGAGGGAAATGAGGCCAAGGCTCCATGTAGTGTTTCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGGTGGAGGGAAATGAGGCCAAGGCTCCATGTAGTGTTTCCATA  249

seq1  TTTACATGTGCCTAACTGAGAAAGGGCAATGATCTAGAGACACATAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGTGCCTAACTGAGAAAGGGCAATGATCTAGAGACACATAAGGA  299

seq1  GAGCAGAAAGTCATGAACTCAGGAGCAATATGAGAGGAGGAAGCAGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAAGTCATGAACTCAGGAGCAATATGAGAGGAGGAAGCAGTGAG  349

seq1  AGGATGGTAAACAAGAAGGCACGTTGGCAGCTGGGCATACAGCAGGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTAAACAAGAAGGCACGTTGGCAGCTGGGCATACAGCAGGGAGG  399

seq1  TACAAGGTAGCAGTGGCAGCAAAGAGTCAAGGGCCCAGTCTCCAGTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGTAGCAGTGGCAGCAAAGAGTCAAGGGCCCAGTCTCCAGTGTGA  449

seq1  GTCCCACACATGTGAATCCTGAACACAGCACTTGGAAGTTATATGGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACACATGTGAATCCTGAACACAGCACTTGGAAGTTATATGGCCAG  499

seq1  AGGAAAGGCGTCACACCCTTCCTAGGTCTCGGATTCCTCACCTCTGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGCGTCACACCCTTCCTAGGTCTCGGATTCCTCACCTCTGCTGT  549

seq1  GGCAACAGTGACGGAGACTGCTTGCAAAGGTATTAGTAATGTAGGCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAGTGACGGAGACTGCTTGCAAAGGTATTAGTAATGTAGGCTGAA  599

seq1  GTAAATGATAAGCACTTGGTCCCTGGCAAGTTCTCCTGAAATATGTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGATAAGCACTTGGTCCCTGGCAAGTTCTCCTGAAATATGTGCTA  649

seq1  TTGTCTATGCTATGTCAAGAGCATGAGGTGACGGAAAGGGGAAGATGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTATGCTATGTCAAGAGCATGAGGTGACGGAAAGGGGAAGATGGAA  699

seq1  ATTTATACACGAAACTTCTGCTGGCAGTAGAGATCTTGAAGAATTGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACACGAAACTTCTGCTGGCAGTAGAGATCTTGAAGAATTGAGCA  749

seq1  AAGTAGATCAAAGCTATTTGGCAAAACTGGGTTTGGTGGTACACATTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATCAAAGCTATTTGGCAAAACTGGGTTTGGTGGTACACATTGCT  799

seq1  AATCCAAGCACTTGGGAAGAGGAGGCAGGAGGCTCTGAAATTTAAGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAGCACTTGGGAAGAGGAGGCAGGAGGCTCTGAAATTTAAGTATA  849

seq1  GCCTTGGCTACTTACATGGAGAATTC  876
      ||||||||||||||||||||||||||
seq2  GCCTTGGCTACTTACATGGAGAATTC  875

seq1: chr6_53341844_53342896
seq2: B6Ng01-055B06.g_67_1111

seq1  GAATTCAGGCCCTCAGGCTTGCATGGCATCTCCCCTGCCCACTCTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCCCTCAGGCTTGCATGGCATCTCCCCTGCCCACTCTCTGTC  50

seq1  CAAGTCTTGAATTGGCTCATCAGTAAAGTTCTACAGAAGGGAAGTTCTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTGAATTGGCTCATCAGTAAAGTTCTACAGAAGGGAAGTTCTCG  100

seq1  CTCACTTGGGGAATTGGCCTTTGATGTCCTATGCTTCTTCTTTACATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTGGGGAATTGGCCTTTGATGTCCTATGCTTCTTCTTTACATTTC  150

seq1  CAGCTGTAGGGTTAGAAGCTCTAGACACCAGGCAGATAGGGAGTGGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTAGGGTTAGAAGCTCTAGACACCAGGCAGATAGGGAGTGGATGC  200

seq1  TTATTAGTCTCAGTGCCCATCGAAACAATTGCATCTTATTGATTCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTCTCAGTGCCCATCGAAACAATTGCATCTTATTGATTCTGCCT  250

seq1  TTAATTCTGATGTCCTTTTCCAAAATAATCTCAGTGTGTCTATGGAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTGATGTCCTTTTCCAAAATAATCTCAGTGTGTCTATGGAATGT  300

seq1  AAGGTTAGAGCAGATCACAGCCGGGGGCAGAAGACCCCAGTGTCTGTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAGAGCAGATCACAGCCGGGGGCAGAAGACCCCAGTGTCTGTATC  350

seq1  AATATTACACAGCAAATTCCAGTCTCTAAGATGACCTCTATTTTTGATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACACAGCAAATTCCAGTCTCTAAGATGACCTCTATTTTTGATAC  400

seq1  CAATACAAGCTCATTGCTTCATAACTCTTCTGTAAGAAATCTCCAACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAAGCTCATTGCTTCATAACTCTTCTGTAAGAAATCTCCAACTCT  450

seq1  GAAAGCGTGTTATGATTCTCTAGCAGGCATTACAAAGCTCAGCTTGCCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCGTGTTATGATTCTCTAGCAGGCATTACAAAGCTCAGCTTGCCCG  500

seq1  TGGCTTAGCACTCCGCAGCCTGTATCCTGAAGCCTGTGCATCAGGTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGCACTCCGCAGCCTGTATCCTGAAGCCTGTGCATCAGGTTCCA  550

seq1  TTCAGGAAATGTTTTAGGGAGATGTCAATATACCAAGTGCTACCCAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAATGTTTTAGGGAGATGTCAATATACCAAGTGCTACCCAAGGC  600

seq1  ACTGATGAAGACACTAATAGATACAAGTGGTTAAAACAAACAAGCAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGAAGACACTAATAGATACAAGTGGTTAAAACAAACAAGCAAACA  650

seq1  AGTACGCAAAATGTCTCAGCTTTCAGGTGACTTACTTCTTATGGACCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGCAAAATGTCTCAGCTTTCAGGTGACTTACTTCTTATGGACCAGA  700

seq1  CATTGCATCAGCGAAAAATGCCCCACAATGTACTATGGAGTTCAATGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATCAGCGAAAAATGCCCCACAATGTACTATGGAGTTCAATGCCA  750

seq1  AGGAGCTGAGGAAGGGCTGGGTGTGTTCAGAGAGGGCATCCCGACCCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGAGGAAGGGCTGGGTGTGTTCAGAGAGGGCATCCCGACCCAGG  800

seq1  GGACCTAGAGACCCAAGTAGACAAGTAGACGTTCTTAGCCAGAAAAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTAGAGACCCAAGTAGACAAGTAGACGTTCTTAGCCAGAAAAGATG  850

seq1  AGTTGTGAAAACAGAGACTGAGTGTGAAGGCCTAAGACTGAGTGATGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGAAAACAGAGACTGAGTGTGAAGGCCTAAGACTGAGTGATGGAG  900

seq1  TGTGTGTTGCAGAAGTTGTCAGGGAAGGATGCCCTAGAGAGTTGGGTATG  950
      |||||||||||||||||||||||  | |||||||||||||||||||||||
seq2  TGTGTGTTGCAGAAGTTGTCAGG--AAGATGCCCTAGAGAGTTGGGTATG  948

seq1  GGAAGGCAGGCCCAGGAGGGCGAGGGTGATGCAGGCCTTTTGGAGTGGTC  1000
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  GGAAGGCA-GCCCAGGAGGGCGAGGGTGATGCA-GCCTTTTGGAGTGGTC  996

seq1  AGTTTTGACTCTGACTCTAAATGGGATAGGAAGCCATAGGGCGATTCTGA  1050
      || ||||||||||||||| |||||||||||||| |||| |||||||||||
seq2  AG-TTTGACTCTGACTCT-AATGGGATAGGAAG-CATA-GGCGATTCTGA  1042

seq1  GCA  1053
      |||
seq2  GCA  1045