BAC Information

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BAC

Clone NameB6Ng01-055E10
Chromosome6 (Build37)6 (Build37)
Map Location 18,835,682 - 18,835,96878,320,714 - 78,321,876
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055E10.bB6Ng01-055E10.g
ACCDH877772DH877773
length2851,164
definitionDH877772|Mus musculus domesticus DNA, BAC clone: B6Ng01-055E10, 5' end.DH877773|Mus musculus domesticus DNA, BAC clone: B6Ng01-055E10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,682 - 18,835,968)(78,320,714 - 78,321,876)
sequence
tttgttcagttctgagccccattttttaatggggttatttgattttctga
agtccaccttcttgagttctttatatatgttggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggtctttttgt
cttattgacggtgtcttttgccttgcagaaactttggagtttcattaggt
cccatttgtcgattctcgatcttacagcacaagccattgctgttctgttc
aggaatttttcccctgtgcccatagacttttcaag
gaattcttagttcttatcagaagagtagcctgttctttcttggaaactct
ttgagtctgtgccaaatgctgcccaccatccttaactggatcaatgttcc
agttatttactacgatgtccctccctcaaattctgttataaaaacacagt
catctctgtcctgacacaccatccagatctctggaagacaggtaagggtg
aactgaaagatgctgaaaggtaggcatgggttcttctctcacacacagga
caggtgtctgtgtcctcagacaacacagagttttgtaacttgaggtattt
aggaagttctcagggagaggaaaaaacatcaatttccacttaattcctgt
atcacaggagaaagacaggatgatataattttcccttgagagttaatcaa
agaaggggagggacggttctctctgaatgtcctcactaaccacacaacct
agagttattctggctattcctccctcacagacaagatgctgcctccaaca
gcctgctccgtcatgtcctggatgctgctctcctgcctgatgctcttatc
tcaggttcaaggtaagacctctctgcatgtagcaatgatcccttgaaagt
gtttcaagataggaaagtttcatgttgtaattaggaggaaaaattcacac
aagtaaactgcctgcaactttccagcctttcttcaggtcattagttatag
aagatatcagacgggtcatctctgtggaaagacaagatttctcatgttgt
cagaattttgtaatttattcttccaagattaaaggggaaaatatgatggt
taatatgaactgtatagaagaggaaagatggacaggtgtatttagccctc
tctgcccagtgttggtagagtcatgaacttaatgtggtagaaaagaagag
aaaaaatgatgctatcccatttactatgtctggttcatcataattttttt
caaagactatagaaagcttgatattgattttcttcaaaagataatctaca
aaatattcctactttaacttttcatctaatctccttactcatctcaccca
ttcgctctatttatctcactccacccaggtgaagactccctgaagataat
taccctccgcacgcattagttgccctaaggtctctctagctttatggctc
tcactgctatgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835682_18835968
seq2: B6Ng01-055E10.b_47_337 (reverse)

seq1  CTTGAAGA---TATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAAT  47
      |||||| |   |||||||| ||||||||| ||||||||||||||||||||
seq2  CTTGAAAAGTCTATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAAT  50

seq1  GGC-TGTGCTGTGAGGTAGAGAATCGACAAATGGGACCTAATGAAACTCC  96
      ||| |||||||| || | ||||||||||||||||||||||||||||||||
seq2  GGCTTGTGCTGTAAGATCGAGAATCGACAAATGGGACCTAATGAAACTCC  100

seq1  AAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCA  150

seq1  ACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAAT  200

seq1  ATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATA  250

seq1  ACCCCATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  287
      |||||||||| ||||||||||||||||||||||||||||||
seq2  ACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  291

seq1: chr6_78320714_78321876
seq2: B6Ng01-055E10.g_69_1232

seq1  GAATTCTTAGTTCTTATCAGAAGAGTAGCCTGTTCTTTCTTGGAAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTTCTTATCAGAAGAGTAGCCTGTTCTTTCTTGGAAACTCT  50

seq1  TTGAGTCTGTGCCAAATGCTGCCCACCATCCTTAACTGGATCAATGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTGTGCCAAATGCTGCCCACCATCCTTAACTGGATCAATGTTCC  100

seq1  AGTTATTTACTACGATGTCCCTCCCTCAAATTCTGTTATAAAAACACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTACTACGATGTCCCTCCCTCAAATTCTGTTATAAAAACACAGT  150

seq1  CATCTCTGTCCTGACACACCATCCAGATCTCTGGAAGACAGGTAAGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGTCCTGACACACCATCCAGATCTCTGGAAGACAGGTAAGGGTG  200

seq1  AACTGAAAGATGCTGAAAGGTAGGCATGGGTTCTTCTCTCACACACAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAGATGCTGAAAGGTAGGCATGGGTTCTTCTCTCACACACAGGA  250

seq1  CAGGTGTCTGTGTCCTCAGACAACACAGAGTTTTGTAACTTGAGGTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTCTGTGTCCTCAGACAACACAGAGTTTTGTAACTTGAGGTATTT  300

seq1  AGGAAGTTCTCAGGGAGAGGAAAAAACATCAATTTCCACTTAATTCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTTCTCAGGGAGAGGAAAAAACATCAATTTCCACTTAATTCCTGT  350

seq1  ATCACAGGAGAAAGACAGGATGATATAATTTTCCCTTGAGAGTTAATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGGAGAAAGACAGGATGATATAATTTTCCCTTGAGAGTTAATCAA  400

seq1  AGAAGGGGAGGGACGGTTCTCTCTGAATGTCCTCACTAACCACACAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGGAGGGACGGTTCTCTCTGAATGTCCTCACTAACCACACAACCT  450

seq1  AGAGTTATTCTGGCTATTCCTCCCTCACAGACAAGATGCTGCCTCCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATTCTGGCTATTCCTCCCTCACAGACAAGATGCTGCCTCCAACA  500

seq1  GCCTGCTCCGTCATGTCCTGGATGCTGCTCTCCTGCCTGATGCTCTTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCCGTCATGTCCTGGATGCTGCTCTCCTGCCTGATGCTCTTATC  550

seq1  TCAGGTTCAAGGTAAGACCTCTCTGCATGTAGCAATGATCCCTTGAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTCAAGGTAAGACCTCTCTGCATGTAGCAATGATCCCTTGAAAGT  600

seq1  GTTTCAAGATAGGAAAGTTTCATGTTGTAATTAGGAGGAAAAATTCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGATAGGAAAGTTTCATGTTGTAATTAGGAGGAAAAATTCACAC  650

seq1  AAGTAAACTGCCTGCAACTTTCCAGCCTTTCTTCAGGTCATTAGTTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAACTGCCTGCAACTTTCCAGCCTTTCTTCAGGTCATTAGTTATAG  700

seq1  AAGATATCAGACGGGTCATCTCTGTGGAAAGACAAGATTTCTCATGTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATCAGACGGGTCATCTCTGTGGAAAGACAAGATTTCTCATGTTGT  750

seq1  CAGAATTTTGTAATTTATTCTTCCAAGATTAAAGGGGAAAATATGATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTTGTAATTTATTCTTCCAAGATTAAAGGGGAAAATATGATGGT  800

seq1  TAATATGAACTGTATAGAAGAGGAAAGATGGACAGGTGTATTTAAGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  TAATATGAACTGTATAGAAGAGGAAAGATGGACAGGTGTATTTAGCCCTC  850

seq1  TCTGCCCAGTGTTGGTAGAGTCATGAAC-TAATGT-GTAGAAAAGAAGAG  898
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  TCTGCCCAGTGTTGGTAGAGTCATGAACTTAATGTGGTAGAAAAGAAGAG  900

seq1  -AAAAATGATGCTATCCCATTTACTATGTCT-GTTCATCATAATTTTTTC  946
       |||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  AAAAAATGATGCTATCCCATTTACTATGTCTGGTTCATCATAATTTTTTT  950

seq1  CAAAGACTATTAGAAAGCTTGATATTGATTTTCTTCCAAAAGATAATCTA  996
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  CAAAGACTA-TAGAAAGCTTGATATTGATTTTCTT-CAAAAGATAATCTA  998

seq1  CAAAAATATTCCTACTTTAACCTTTCATCTAAATCTCACTACTCATCTCA  1046
      | ||||||||||||||||||| |||||||| ||||||  |||||||||||
seq2  C-AAAATATTCCTACTTTAACTTTTCATCT-AATCTCCTTACTCATCTCA  1046

seq1  CCCCATCGCTCTATTTATCTCACTCCACCCCAGGTGAAGACTCCCTGAAG  1096
      |||  |||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCCATTCGCTCTATTTATCTCACTCCA-CCCAGGTGAAGACTCCCTGAAG  1095

seq1  A-ATATACCCTCCGCACGCATTAGTTGCCCCAAGGGCTC-CCAGGCTTAT  1144
      | |  ||||||||||||||||||||||||| |||| ||| | ||  ||||
seq2  ATAATTACCCTCCGCACGCATTAGTTGCCCTAAGGTCTCTCTAGCTTTAT  1145

seq1  GGCTCCTACTGCTATGCCT  1163
      |||||  ||||||||||||
seq2  GGCTCTCACTGCTATGCCT  1164