BAC Information

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BAC

Clone NameB6Ng01-055M24
Chromosome6 (Build37)
Map Location 139,260,225 - 139,452,261
singlet/doubletdoublet
Overlap geneEG632971
Upstream geneLmo3, Igbp1b, EG668196
Downstream geneLOC100043898, Pik3c2g, Plcz1, Capza3, LOC100042680, LOC100039020, LOC269810, Plekha5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055M24.bB6Ng01-055M24.g
ACCDH878157DH878158
length1,151820
definitionDH878157|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M24, 5' end.DH878158|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,260,225 - 139,261,395)(139,451,436 - 139,452,261)
sequence
gtagagaagagtatgacctggggcagaaagccctgtgccccatctctacc
caggacagggactccttatatagccctgagcaggaaatgacatttctcta
cctaatcgagtctacctttataattggaatttaaataatagaatcacaga
attatagatttcttaaaattttatctggatttgcctccaagaaagataca
gtgaggatgtcaatcaagttctttcttctgccacatttgccacataaaaa
agtaaataaagaaacaacacaaaaacaaaagcaaaaacaactgttcctga
acagtagaaagtggtttccaaggtcagaggtaaaactctggggagcacat
gttctcctggagcagaaaagtcagggaaagaatggtctctccaaagcctg
tgtaggactttggagtgcttttgcaatttcatgtgcttgcatatctatac
acgtttttgagatacaactgctgagatctgtgggagacttcctgtgtatg
actgaatctttccacccaacctttcatggacaccatactctgtgtagaaa
ccatgtaacctctttgcaagctttcaatcttgatgtctctcaacctggca
gtattaaacaaccaatcaacaacaaagagttgcctttcttaattatatga
ggccttggcacattgcaaaatcataaagttctacaaagttcagcaccaag
gataaatccaatactcctttttttgtatatatatatatataaaacaaagt
atgacccctcttagaaatattcacactttcagcggtagattttgggtctc
accttagtaacatgctttgtcagcaccatactaatgtcaccatctcttaa
tggaatttgttctttcccaccgcatatatagtaccttatggaagtacgtg
ccataccccttccttctcaccagttttgatgagaacaatggaagccctat
gttcagttagcgcacgctctgtgagatgtggtgagatgacagggcactga
tagaaagcatgtagaaaggaagcagtgacagcaaggcttactctttcaca
ttctagacttcagagtcatgtctttaaggctagtcttcccaacaactcag
gatattctggatctgccctgtccttgaattggcattacctcgatggaata
c
gaattcaaacagcttgtgaaaattaagttcttttccagtattcagaagtg
atgtgtgtaatttaaagcaggcctacataaggctaggtagatccagtctc
ccagaatagtcttccggaccaaacactgtgggaaatcactttataacagg
ctctttcacattcttgtccagataaaaatagtcacatgcacaaaaagggg
tgttcatggagatactgacatggcatgtaacaagggaactgttagatagg
atgtgagggaagcagtaattaagacacttgtattttgtagaataattgct
gcattgtgtgttaacagaagtcttagattttggcagtcctggctgtgatg
gtctgggtaggtaagaagtgtctggcgtggatttgttgggcagaggattt
tcaggatcctgattgtgtagcagttgccctttatccctagctgggaatgt
ttctgtgctatttatgttctgaaatgagacatacagagccttcggagcct
tgggagccagagcttagcactcaaatactcttgtctgcccaccttaaatt
tcctcctcaacctctctatgaactcccacgctgtattcgtccacaagtct
gtctaaatctgtgatctgcttgagaacttgtgctttataaaattaaaaga
ttattcattctttaagagattactttccaatgaaaagtatcacattacta
tatacagtgtgatatttaaaaatactttctttaaagaagctttataatct
ctctctctctctctctctctctctctctctctctctctctctctatgtgt
gtgtgtctgtgtttgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_139260225_139261395
seq2: B6Ng01-055M24.b_56_1206

seq1  GTAGAGAAGAGTATGACCTGGGGCAGAAAGCCCTGTGCCCCATCTCTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAAGAGTATGACCTGGGGCAGAAAGCCCTGTGCCCCATCTCTACC  50

seq1  CAGGACAGGGACTCCTTATATAGCCCTGAGCAGGAAATGACATTTCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGGGACTCCTTATATAGCCCTGAGCAGGAAATGACATTTCTCTA  100

seq1  CCTAATCGAGTCTACCTTTATAATTGGAATTTAAATAATAGAATCACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCGAGTCTACCTTTATAATTGGAATTTAAATAATAGAATCACAGA  150

seq1  ATTATAGATTTCTTAAAATTTTATCTGGATTTGCCTCCAAGAAAGATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGATTTCTTAAAATTTTATCTGGATTTGCCTCCAAGAAAGATACA  200

seq1  GTGAGGATGTCAATCAAGTTCTTTCTTCTGCCACATTTGCCACATAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGATGTCAATCAAGTTCTTTCTTCTGCCACATTTGCCACATAAAAA  250

seq1  AGTAAATAAAGAAACAACACAAAAACAAAAGCAAAAACAACTGTTCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAAAGAAACAACACAAAAACAAAAGCAAAAACAACTGTTCCTGA  300

seq1  ACAGTAGAAAGTGGTTTCCAAGGTCAGAGGTAAAACTCTGGGGAGCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGAAAGTGGTTTCCAAGGTCAGAGGTAAAACTCTGGGGAGCACAT  350

seq1  GTTCTCCTGGAGCAGAAAAGTCAGGGAAAGAATGGTCTCTCCAAAGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTGGAGCAGAAAAGTCAGGGAAAGAATGGTCTCTCCAAAGCCTG  400

seq1  TGTAGGACTTTGGAGTGCTTTTGCAATTTCATGTGCTTGCATATCTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGACTTTGGAGTGCTTTTGCAATTTCATGTGCTTGCATATCTATAC  450

seq1  ACGTTTTTGAGATACAACTGCTGAGATCTGTGGGAGACTTCCTGTGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTTGAGATACAACTGCTGAGATCTGTGGGAGACTTCCTGTGTATG  500

seq1  ACTGAATCTTTCCACCCAACCTTTCATGGACACCATACTCTGTGTAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCTTTCCACCCAACCTTTCATGGACACCATACTCTGTGTAGAAA  550

seq1  CCATGTAACCTCTTTGCAAGCTTTCAATCTTGATGTCTCTCAACCTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAACCTCTTTGCAAGCTTTCAATCTTGATGTCTCTCAACCTGGCA  600

seq1  GTATTAAACAACCAATCAACAACAAAGAGTTGCCTTTCTTAATTATATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAACAACCAATCAACAACAAAGAGTTGCCTTTCTTAATTATATGA  650

seq1  GGCCTTGGCACATTGCAAAATCATAAAGTTCTACAAAGTTCAGCACCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGCACATTGCAAAATCATAAAGTTCTACAAAGTTCAGCACCAAG  700

seq1  GATAAATCCAATACTCCTTTTTTTGTATATATATATATATAAAACAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATCCAATACTCCTTTTTTTGTATATATATATATATAAAACAAAGT  750

seq1  ATGACCCCTCTTAGAAATATTCACACTTTCAGCGGTAGATTTTGGGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCCTCTTAGAAATATTCACACTTTCAGCGGTAGATTTTGGGTCTC  800

seq1  ACCTTAGTAACATGCTTTGTCAGCACCATACTAATGTCACCATCTCTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGTAACATGCTTTGTCAGCACCATACTAATGTCACCATCTCTTAA  850

seq1  TGGAATTTGTTCTTTCCCACCGCATATATAGTACCTTATGGAAGTACGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTGTTCTTTCCCACCGCATATATAGTACCTTATGGAAGTACGTG  900

seq1  CCATACCCCTTCCTTCTCACCAGTTTTGATGAGAACAATGGAAGCCCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCCCTTCCTTCTCACCAGTTTTGATGAGAACAATGGAAGCCCTAT  950

seq1  GTTCAGTTAGCGCAACGCTCTGTGAGATGTTGGTGAGATGACCAAGGGCA  1000
      ||||||||||||| ||||||||||||||| ||||||||||||  ||||| 
seq2  GTTCAGTTAGCGC-ACGCTCTGTGAGATG-TGGTGAGATGAC--AGGGC-  995

seq1  ACTGATAGAAAGCAGTGTAGACAGGAAGCAGTGACAAGCCAGGGCTTACT  1050
      |||||||||||||| |||||| ||||||||||||||   || ||||||||
seq2  ACTGATAGAAAGCA-TGTAGAAAGGAAGCAGTGACA--GCAAGGCTTACT  1042

seq1  CTTTCACCATTCTAGACTTCAGGAGTCAATTGGTCTTTAGGGCTAGTTCT  1100
      |||||| |||||||||||||| ||||||    ||||||| |||||| |||
seq2  CTTTCA-CATTCTAGACTTCA-GAGTCA---TGTCTTTAAGGCTAG-TCT  1086

seq1  TCCCAACATACTCAGGATTATTCTGATCCTGCCCTGTCTTTTAGATTTGG  1150
      |||||||| |||||||| |||||||   |||||||||| ||  || || |
seq2  TCCCAACA-ACTCAGGA-TATTCTGGATCTGCCCTGTCCTT--GAATT-G  1131

seq1  GCATTACTCCAGATGGAATAC  1171
      ||||||| |  ||||||||||
seq2  GCATTAC-CTCGATGGAATAC  1151

seq1: chr6_139451436_139452261
seq2: B6Ng01-055M24.g_70_889 (reverse)

seq1  ACACACAAACACATACACACACACACAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||| ||||||||||      | ||||||||||||||||||
seq2  ACACACAAACACAGACACACACAC------ATAGAGAGAGAGAGAGAGAG  44

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGATTATAAAGCTTCTTTAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGATTATAAAGCTTCTTTAAAGAA  94

seq1  AGTATTTTTAAATATCACACTGTATATAGTAATGTGATACTTTTCATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTAAATATCACACTGTATATAGTAATGTGATACTTTTCATTGG  144

seq1  AAAGTAATCTCTTAAAGAATGAATAATCTTTTAATTTTATAAAGCACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATCTCTTAAAGAATGAATAATCTTTTAATTTTATAAAGCACAAG  194

seq1  TTCTCAAGCAGATCACAGATTTAGACAGACTTGTGGACGAATACAGCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGCAGATCACAGATTTAGACAGACTTGTGGACGAATACAGCGTG  244

seq1  GGAGTTCATAGAGAGGTTGAGGAGGAAATTTAAGGTGGGCAGACAAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCATAGAGAGGTTGAGGAGGAAATTTAAGGTGGGCAGACAAGAGT  294

seq1  ATTTGAGTGCTAAGCTCTGGCTCCCAAGGCTCCGAAGGCTCTGTATGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTGCTAAGCTCTGGCTCCCAAGGCTCCGAAGGCTCTGTATGTCT  344

seq1  CATTTCAGAACATAAATAGCACAGAAACATTCCCAGCTAGGGATAAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGAACATAAATAGCACAGAAACATTCCCAGCTAGGGATAAAGGG  394

seq1  CAACTGCTACACAATCAGGATCCTGAAAATCCTCTGCCCAACAAATCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCTACACAATCAGGATCCTGAAAATCCTCTGCCCAACAAATCCAC  444

seq1  GCCAGACACTTCTTACCTACCCAGACCATCACAGCCAGGACTGCCAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACACTTCTTACCTACCCAGACCATCACAGCCAGGACTGCCAAAAT  494

seq1  CTAAGACTTCTGTTAACACACAATGCAGCAATTATTCTACAAAATACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACTTCTGTTAACACACAATGCAGCAATTATTCTACAAAATACAAG  544

seq1  TGTCTTAATTACTGCTTCCCTCACATCCTATCTAACAGTTCCCTTGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAATTACTGCTTCCCTCACATCCTATCTAACAGTTCCCTTGTTAC  594

seq1  ATGCCATGTCAGTATCTCCATGAACACCCCTTTTTGTGCATGTGACTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGTCAGTATCTCCATGAACACCCCTTTTTGTGCATGTGACTATT  644

seq1  TTTATCTGGACAAGAATGTGAAAGAGCCTGTTATAAAGTGATTTCCCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGGACAAGAATGTGAAAGAGCCTGTTATAAAGTGATTTCCCACA  694

seq1  GTGTTTGGTCCGGAAGACTATTCTGGGAGACTGGATCTACCTAGCCTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGTCCGGAAGACTATTCTGGGAGACTGGATCTACCTAGCCTTAT  744

seq1  GTAGGCCTGCTTTAAATTACACACATCACTTCTGAATACTGGAAAAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCCTGCTTTAAATTACACACATCACTTCTGAATACTGGAAAAGAAC  794

seq1  TTAATTTTCACAAGCTGTTTGAATTC  826
      ||||||||||||||||||||||||||
seq2  TTAATTTTCACAAGCTGTTTGAATTC  820