BAC Information

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BAC

Clone NameB6Ng01-056C08
ChromosomeY (Build37)6 (Build37)
Map Location 1,870,346 - 1,870,486109,202,850 - 109,203,371
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056C08.bB6Ng01-056C08.g
ACCDH878398DH878399
length494516
definitionDH878398|Mus musculus domesticus DNA, BAC clone: B6Ng01-056C08, 5' end.DH878399|Mus musculus domesticus DNA, BAC clone: B6Ng01-056C08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,486)(109,202,850 - 109,203,371)
sequence
tttgttcagttctgagccccatcttttaagggggttatttcattttctgg
agtccaccctcttgggttctttatatatattggatattagtcccctatca
gatttaagataggaaaagatcctttcccaatctgttggtggcctttttgt
cttattaacggtgtcttctgccatatccagggatccatcccataattagc
ctccaaacgatgacaccattgcatacactagcaagcgtttgttgcaagga
ccgtgatacagctgtctcttgtgagactaggccggggcctagcaaacaca
gaagtggatgctcacagtcaactattggatggatcacagggcccccaatg
gaggatctagagaaagtatccaaggagctaaagagatctgcaaccctgta
ggtgcaacattatgaactaaccagtaccccggagctcttgactctagctg
catatgtatcaaaagatggcctagtctgctatcactggaaagag
cctcttcatgggcaattccagcctttatacaattcacctatttagggaag
gaaatctgtcttactaatttcaaagtcatacatttaagtaatgcattcat
gttaaaaaaataccttcatgttggacactctttctagagaccaagcctag
ctgtttggacacattagacaagacattagacatctgggtggtatttcatt
cttcacatccgaggcatctcttaggttagttttcacagtaacgaaaaacc
aagagacaggacaattaagaaagggagctaaagaggaaaagtaagcatga
ggtatggacatgcaggtgttcattaaattgtacttggaaaaagaaaactc
atatgagtatccaaaaggaaaaaaaaaaacatggaatcattcctggagac
tagacagcagtgctaacagtgaggaggctgacactgaagttaggatgtta
tgaaggaaggagagacagagaaaggggcaaaagaatagaagggaaaaggg
gagggagggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870486
seq2: B6Ng01-056C08.b_407_544

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||| ||||||||||||| ||||||  
seq2  CTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTG--  48

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
       ||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  -CAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  97

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAG  141
      | ||||||||||||||||||||| || ||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCTGCTATCACTGGAAAGAG  138

seq1: chr6_109202850_109203371
seq2: B6Ng01-056C08.g_68_589 (reverse)

seq1  CCTCCCTCCCTCCCTCCCCTTTTCCCTTCTATTCTTTTGCCCCTTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCTCCCTCCCCTTTTCCCTTCTATTCTTTTGCCCCTTTCTCT  50

seq1  GTCTCTCCTTCCTTCATAACATCCTAACTTCAGTGTCAGCCTCCTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTTCCTTCATAACATCCTAACTTCAGTGTCAGCCTCCTCACTG  100

seq1  TTAGCACTGCTGTCTAGTCTCCAGGAATGATTCCATGTTTTTTTTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTGCTGTCTAGTCTCCAGGAATGATTCCATGTTTTTTTTTTTCC  150

seq1  TTTTGGATACTCATATGAGTTTTCTTTTTCCAAGTACAATTTAATGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATACTCATATGAGTTTTCTTTTTCCAAGTACAATTTAATGAACA  200

seq1  CCTGCATGTCCATACCTCATGCTTACTTTTCCTCTTTAGCTCCCTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATGTCCATACCTCATGCTTACTTTTCCTCTTTAGCTCCCTTTCTT  250

seq1  AATTGTCCTGTCTCTTGGTTTTTCGTTACTGTGAAAACTAACCTAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCCTGTCTCTTGGTTTTTCGTTACTGTGAAAACTAACCTAAGAGA  300

seq1  TGCCTCGGATGTGAAGAATGAAATACCACCCAGATGTCTAATGTCTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCGGATGTGAAGAATGAAATACCACCCAGATGTCTAATGTCTTGTC  350

seq1  TAATGTGTCCAAACAGCTAGGCTTGGTCTCTAGAAAGAGTGTCCAACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTCCAAACAGCTAGGCTTGGTCTCTAGAAAGAGTGTCCAACATG  400

seq1  AAGGTATTTTTTTAACATGAATGCATTACTTAAATGTATGACTTTGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATTTTTTTAACATGAATGCATTACTTAAATGTATGACTTTGAAAT  450

seq1  TAGTAAGACAGATTTCCTTCCCTAAATAGGTGAATTGTATAAAGGCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGACAGATTTCCTTCCCTAAATAGGTGAATTGTATAAAGGCTGGA  500

seq1  ATTGCCCATGAAGAGGGAATTC  522
      ||||||||||||||||||||||
seq2  ATTGCCCATGAAGAGGGAATTC  522