BAC Information

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BAC

Clone NameB6Ng01-056G10
Chromosome6 (Build37)
Map Location 95,121,866 - 95,246,104
singlet/doubletdoublet
Overlap geneLOC435912
Upstream geneMagi1, LOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8
Downstream geneSuclg2, LOC665886, LOC545867, C630007B19Rik, LOC100043685, 1700123L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056G10.bB6Ng01-056G10.g
ACCDH878567DH878568
length1,1481,067
definitionDH878567|Mus musculus domesticus DNA, BAC clone: B6Ng01-056G10, 5' end.DH878568|Mus musculus domesticus DNA, BAC clone: B6Ng01-056G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,244,929 - 95,246,104)(95,121,866 - 95,122,947)
sequence
gaattctccacctactgccacacttcatgctcagagggatgacctggcaa
acacgctgctctaatttccacactctacaaagttgctctggagcgtgttc
taacttctgccataaactctgtatattaaagatgccttcactttttccaa
ccatggtgctcagtttcagcaatgaggtttttcatcgaaacattttacag
atttctagatgcttgattttgaagtctgccgaatgaatccaagacttcac
ccgagagactgttaggacgccgtggaattgtaatcttccctgtccactct
agcctacggagtcccattcacctgcttgatgagctctccagatagctgta
tgcacttaaaaccagagaatccctgatctagaccagggtccgacctctgc
atcattaggaatgtctacagatgagatctttctgcagttgaaagggtgct
attatgcaatcctccactgtctttgctttgtctcagacagatacagagct
aggcaggtttgttctgaatttggtgtcctgttagattttttcctgaatct
gctgtaacttaaggacaatgccctagacaggaggatagatggcataaaga
aatcttgtgcccaaaaaataaatcacaaagtcagtaaggaaattcatgga
caactaaagaactcttgagaaatgacttaaagccaacctaagtatgacga
tccaatttttagaacaatgggaatgtctctagtctcagggacaacaaaga
aggtgacagcttgaagctcttttccttaaacccaggaattctcaaacacc
tcttaaaagtctaaatactctaacaaaaattatagataaatattcaaatg
gatatgaacaaataactccatgacacttgaagacaaatattcactccgcc
tttcccccaacctccacatgctcctttcacagatgaattcaagcaaattt
atagcttgtgagccaacagaaggggaagagcacttgtgatgtaaaacata
atttccagggttcaaactgcttctaaacatagctcataattgctctttaa
atctttccatgattttaataattttgaagaacaattactgttgtttgcaa
tgaagaaagaatctatatcagtaaagtagctaatccttctaaacagac
gaattctttaagacaaaataatatttaattcttgtatgcttaaaagcatt
cagaactatataaaaatatagaaagctacttgggtcatttcccaaatata
atatatcttgaaatctctatgtttaaaagatgacagtaaaatgaatttta
tagttctatgttgcttatgaataaagggttcacctcaagaagacagaatt
aaaattcagcagtggagtaaggtaaaataattcagtacatggcatagtat
gtaccttgtgtcagtaatgcaaatacaatcaacaacattttcagtatatc
cttggtgaaatataatccaaattattgtttaaatatttctttaatgctca
aatgaattatctctgataagacactagactttgccaggcagtggtggggc
acactgttgatcctagcacttgggaggtagaagcaagtatgtctctgagt
ttgaggccagcctggtctacagagccagttctaggatagccagaactata
cagagaaaccctgtctcaaaaaatcaaccaaccaaccaattaagcaacca
accaaccaaacaaacaaacaaataactagacttctaagattaaaatctag
tcttagaatactggataaagcctagaaatggacaaattgttcatgtttag
taaactaaaacaaatagacattattgtttgcaaatggtatacatatatat
atgtgtgtgtgtgtaatatatatataaagtcagcaagcaaacaaacaaca
aaacttggcatcatgacacatgcttgacatctcagccttgaagagacaga
agcagaagatgtgttcctgggtctgtccagccattctagcctaataggca
tgccaggtctaaaacacttggtttttagatcatttatccttatagcttcg
ctttctgttactcttagaagtgttcttgctgttgttaagatgtcttattt
ctaccatactactagtctatgtgttatatatatttaaagtgttctacact
ctctagatctgagtagacacgaatgctcactttctctgtttctattcata
gtgcggaagtctagacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_95244929_95246104
seq2: B6Ng01-056G10.b_47_1194 (reverse)

seq1  GTCTGTTTTAGAAGAGATTTAAGACCTTACTTTCTAACTGATATGAACTC  50
      ||||| |||||||| ||||  ||    ||||||   ||||||||  | ||
seq2  GTCTG-TTTAGAAG-GATT--AG---CTACTTT---ACTGATATAGATTC  40

seq1  TTTTCTTCATATGCAAAACAAACAGTAAATTTGTTCTTTCAAAAATATAT  100
       ||||||||| ||||||   ||||||||  |||||| |||||||   |||
seq2  -TTTCTTCAT-TGCAAA--CAACAGTAA--TTGTTC-TTCAAAA--TTAT  81

seq1  AAAAATCAATGAGAAAGATTTAAAGGAGCAATTAATGAGCTAATGTTTAG  150
       |||||| ||| |||||||||||| |||||||| ||||||| ||||||||
seq2  TAAAATC-ATG-GAAAGATTTAAA-GAGCAATT-ATGAGCT-ATGTTTAG  126

seq1  AAAGCAGTTTGAACCCCTGGGAAATAATGTTTTACATCCACAAGTGCTCT  200
       |||||||||||||||   |||||| ||||||||||| ||||||||||||
seq2  -AAGCAGTTTGAACCC--TGGAAATTATGTTTTACAT-CACAAGTGCTCT  172

seq1  TCCCCTTCTGTTGGCTCACAAGCTATAAATTTGCTTGAATTCATCTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCTGTTGGCTCACAAGCTATAAATTTGCTTGAATTCATCTGTGA  222

seq1  AAGGAGCATGTGGAGGTTGGGGGAAAGGCGGAGTGAATATTTTGTCTTCA  300
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGGAGCATGTGGAGGTTGGGGGAAAGGCGGAGTGAATA-TTTGTCTTCA  271

seq1  AGTGTCATGGAGTTATTTGTTCATATCCATTTGAATATTTATCTATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCATGGAGTTATTTGTTCATATCCATTTGAATATTTATCTATAATT  321

seq1  TTTGTTAGAGTATTTAGACTTTTAAGAGGTGTTTGAGAATTCCTGGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGAGTATTTAGACTTTTAAGAGGTGTTTGAGAATTCCTGGGTTT  371

seq1  AAGGAAAAGAGCTTCAAGCTGTCACCTTCTTTGTTGTCCCTGAGACTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGAGCTTCAAGCTGTCACCTTCTTTGTTGTCCCTGAGACTAGA  421

seq1  GACATTCCCATTGTTCT-AAAATTGGATCGTCATACTTAGGTTGGCTTTA  499
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACATTCCCATTGTTCTAAAAATTGGATCGTCATACTTAGGTTGGCTTTA  471

seq1  AGTCATTTCTCAAGAGTTCTTTAGTTGTCCATGAATTTCCTTACTGACTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTCTCAAGAGTTCTTTAGTTGTCCATGAATTTCCTTACTGACTT  521

seq1  TGTGATTTATTTTTTGGGCACAAGATTTCTTTATGCCATCTATCCTCCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTATTTTTTGGGCACAAGATTTCTTTATGCCATCTATCCTCCTG  571

seq1  TCTAGGGCATTGTCCTTAAGTTACAGCAGATTCAGGAAAAAATCTAACAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGCATTGTCCTTAAGTTACAGCAGATTCAGGAAAAAATCTAACAG  621

seq1  GACACCAAATTCAGAACAAACCTGCCTAGCTCTGTATCTGTCTGAGACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAAATTCAGAACAAACCTGCCTAGCTCTGTATCTGTCTGAGACAA  671

seq1  AGCAAAGACAGTGGAGGATTGCATAATAGCACCCTTTCAACTGCAGAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGACAGTGGAGGATTGCATAATAGCACCCTTTCAACTGCAGAAAG  721

seq1  ATCTCATCTGTAGACATTCCTAATGATGCAGAGGTCGGACCCTGGTCTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATCTGTAGACATTCCTAATGATGCAGAGGTCGGACCCTGGTCTAG  771

seq1  ATCAGGGATTCTCTGGTTTTAAGTGCATACAGCTATCTGGAGAGCTCATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGATTCTCTGGTTTTAAGTGCATACAGCTATCTGGAGAGCTCATC  821

seq1  AAGCAGGTGAATGGGACTCCGTAGGCTAGAGTGGACAGGGAAGATTACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTGAATGGGACTCCGTAGGCTAGAGTGGACAGGGAAGATTACAA  871

seq1  TTCCACGGCGTCCTAACAGTCTCTCGGGTGAAGTCTTGGATTCATTCGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACGGCGTCCTAACAGTCTCTCGGGTGAAGTCTTGGATTCATTCGGC  921

seq1  AGACTTCAAAATCAAGCATCTAGAAATCTGTAAAATGTTTCGATGAAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAAAATCAAGCATCTAGAAATCTGTAAAATGTTTCGATGAAAAA  971

seq1  CCTCATTGCTGAAACTGAGCACCATGGTTGGAAAAAGTGAAGGCATCTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTGCTGAAACTGAGCACCATGGTTGGAAAAAGTGAAGGCATCTTT  1021

seq1  AATATACAGAGTTTATGGCAGAAGTTAGAACACGCTCCAGAGCAACTTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAGAGTTTATGGCAGAAGTTAGAACACGCTCCAGAGCAACTTTG  1071

seq1  TAGAGTGTGGAAATTAGAGCAGCGTGTTTGCCAGGTCATCCCTCTGAGCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGTGGAAATTAGAGCAGCGTGTTTGCCAGGTCATCCCTCTGAGCA  1121

seq1  TGAAGTGTGGCAGTAGGTGGAGAATTC  1176
      |||||||||||||||||||||||||||
seq2  TGAAGTGTGGCAGTAGGTGGAGAATTC  1148

seq1: chr6_95121866_95122947
seq2: B6Ng01-056G10.g_70_1135

seq1  GAATTCTTTAAGACAAAATAATATTTAATTCTTGTATGCTTAAAAGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGACAAAATAATATTTAATTCTTGTATGCTTAAAAGCATT  50

seq1  CAGAACTATATAAAAATATAGAAAGCTACTTGGGTCATTTCCCAAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTATATAAAAATATAGAAAGCTACTTGGGTCATTTCCCAAATATA  100

seq1  ATATATCTTGAAATCTCTATGTTTAAAAGATGACAGTAAAATGAATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTTGAAATCTCTATGTTTAAAAGATGACAGTAAAATGAATTTTA  150

seq1  TAGTTCTATGTTGCTTATGAATAAAGGGTTCACCTCAAGAAGACAGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTATGTTGCTTATGAATAAAGGGTTCACCTCAAGAAGACAGAATT  200

seq1  AAAATTCAGCAGTGGAGTAAGGTAAAATAATTCAGTACATGGCATAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAGCAGTGGAGTAAGGTAAAATAATTCAGTACATGGCATAGTAT  250

seq1  GTACCTTGTGTCAGTAATGCAAATACAATCAACAACATTTTCAGTATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTGTGTCAGTAATGCAAATACAATCAACAACATTTTCAGTATATC  300

seq1  CTTGGTGAAATATAATCCAAATTATTGTTTAAATATTTCTTTAATGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGAAATATAATCCAAATTATTGTTTAAATATTTCTTTAATGCTCA  350

seq1  AATGAATTATCTCTGATAAGACACTAGACTTTGCCAGGCAGTGGTGGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTATCTCTGATAAGACACTAGACTTTGCCAGGCAGTGGTGGGGC  400

seq1  ACACTGTTGATCCTAGCACTTGGGAGGTAGAAGCAAGTATGTCTCTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTTGATCCTAGCACTTGGGAGGTAGAAGCAAGTATGTCTCTGAGT  450

seq1  TTGAGGCCAGCCTGGTCTACAGAGCCAGTTCTAGGATAGCCAGAACTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAGCCTGGTCTACAGAGCCAGTTCTAGGATAGCCAGAACTATA  500

seq1  CAGAGAAACCCTGTCTCAAAAAATCAACCAACCAACCAATTAAGCAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTCAAAAAATCAACCAACCAACCAATTAAGCAACCA  550

seq1  ACCAACCAAACAAACAAACAAATAACTAGACTTCTAAGATTAAAATCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAAACAAACAAACAAATAACTAGACTTCTAAGATTAAAATCTAG  600

seq1  TCTTAGAATACTGGATAAAGCCTAGAAATGGACAAATTGTTCATGTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAATACTGGATAAAGCCTAGAAATGGACAAATTGTTCATGTTTAG  650

seq1  TAAACTAAAACAAATAGACATTATTGTTTGCAAATGGTATACATATATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAAAACAAATAGACATTATTGTTTGCAAATGGTATACATATATAT  700

seq1  ATGTGTGTGTGTGTAATATATATATAAAGTCAGCAAGCAAACAAACAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTAATATATATATAAAGTCAGCAAGCAAACAAACAACA  750

seq1  AAACTTGGCATCATGACACATGCTTGACATCTCAGCCCTGAAGAGACAGA  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAACTTGGCATCATGACACATGCTTGACATCTCAGCCTTGAAGAGACAGA  800

seq1  AGCAGAAGATGTGTTCCTGGGTCTGTCCAGCCATTCTAGCCTAATAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGATGTGTTCCTGGGTCTGTCCAGCCATTCTAGCCTAATAGGCA  850

seq1  TGCCAGGTCTAAAACACTTGGTTTTTAGATCACTTTATCCTTAATAGCTT  900
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  TGCCAGGTCTAAAACACTTGGTTTTTAGATCA-TTTATCCTT-ATAGCTT  898

seq1  CGCTTTCTGTTACTCTTAGAAAGTGTTCTTGCTGGTGTTAAGATGTCTTA  950
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  CGCTTTCTGTTACTCTTAG-AAGTGTTCTTGCTGTTGTTAAGATGTCTTA  947

seq1  TTTCTACCAATAACTACTAGTCTATGTGTTTATATATATTTAAAGTTGGT  1000
      |||||||||   |||||||||||||||| |||||||||||||||||  ||
seq2  TTTCTACCA--TACTACTAGTCTATGTG-TTATATATATTTAAAGT--GT  992

seq1  TTCTTACACTTCCTCTAAGATCTGGAGTAAGACAACGATGCTCACTTTCT  1050
      |   ||||||  |||| |||||| |||| |||||   |||||||||||||
seq2  T--CTACACT--CTCT-AGATCT-GAGT-AGACACGAATGCTCACTTTCT  1035

seq1  CTGTTTCTATTCATAGTGCCAGAAGTCTAGAC  1082
      |||||||||||||||||| | |||||||||||
seq2  CTGTTTCTATTCATAGTG-CGGAAGTCTAGAC  1066