BAC Information

Click to search

BAC

Clone NameB6Ng01-057B12
Chromosome6 (Build37)
Map Location 88,146,746 - 88,331,695
singlet/doubletdoublet
Overlap geneGata2, Dnajb8, Eefsec
Upstream geneAntxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1
Downstream geneRuvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057B12.bB6Ng01-057B12.g
ACCDH879065DH879066
length883528
definitionDH879065|Mus musculus domesticus DNA, BAC clone: B6Ng01-057B12, 5' end.DH879066|Mus musculus domesticus DNA, BAC clone: B6Ng01-057B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,330,810 - 88,331,695)(88,146,746 - 88,147,269)
sequence
gaattcatctttgttctcagggatcctctctttagctgtgttagatataa
gtccaatcttaccacatgtgctaatttgtaaaggttttatgtggacttgt
tgaatggttggtgttgaccacatatccttaccttataacacggtgcaggc
taaatgagttttgttccaagtccaggctcagctctatctggtttatccta
atagtggctgctgttttgggacttttggctgactgggcagcccacaaatc
ccactggacctgggttggctctactcctaccttggtattctgggtatgga
catctggaccatgtccttctgaaccacttgatccacttacttggtcttca
acctcaagaacaagagaccttactgctgcttttgtctcaagttctgggtg
atggggagatgtcactatcacctactcagccttttccacagagttctcca
cccaggatttggctcagatgtttggaagacccccacctttgtaggtcagt
tgatagaataaggattcccatccaagtgccagatacagtgcttcatggga
tattctagtggagcaatgtcagtggactgagcttcattcccttaaaatct
ttgctccttgaccttgacaagattgtcaacctttctgagccttacttttc
atctgaggtcaacctgtttatcttaggacgggcagcagctaaacctaaag
gaacatagacctccacagcacatgtacaatagcagctgtgaaaataaaac
agtgatggctgcagacatcctggagggctgttatggccaggttccattct
aacctggtgctgtcatcatttccctcctccagagcagagagctgttggtg
ctggttcccagagccaagtcaggcagcccagaa
gctgcatggggtaccgttgtcgaaaatggggttatcgccggctttgattg
gcctttagaatctcctgctaggttccagggacatagaacaatctggaaac
tccacgacgatttcgccttgctcgttaatggagaatcatgggctaaaggc
tgggagaagccgagaaagccttcccgaaagcgggtcctaagtgaaccgcg
cagtgggagcgcgaatctggctggcactgagaccacccacctgcccagcc
gaccccgaggcactgcggtctcgcgcccctctagcccctggatccctctt
gctagacctcccgcctcggctgggcgcggactcccgagcctcctgggccc
ctgatggctctggagcacagaggcgcggggaatacagcgtacagcaggac
ccccccccccccgcgccagggagcaagaggcgcgggtttccggtccagtg
gagttctgcaccccgggccccaggcctttacctgttccagggcttctgac
atacttatggacgccagccgcataggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_88330810_88331695
seq2: B6Ng01-057B12.b_45_927 (reverse)

seq1  TTCTGGGCTGCCTGACTTGGGCTCTGGGAACCAGCACC-ACAGCTCTCTG  49
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  TTCTGGGCTGCCTGACTT-GGCTCTGGGAACCAGCACCAACAGCTCTCTG  49

seq1  CTCTGGAGGAGGGAAATGATGACAGCACCTAGGTTAGGATGGAACCTGGC  99
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  CTCTGGAGGAGGGAAATGATGACAGCACC-AGGTTAGAATGGAACCTGGC  98

seq1  CATAACAGCCCTCCAGGATGTCTGCAGCCATCACTGTTTCTATTTTCACA  149
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATAACAGCCCTCCAGGATGTCTGCAGCCATCACTGTTT-TATTTTCACA  147

seq1  GCTGCTATTGTTACATGTGCTGTGGAGGTCTATGTTCCTTTAGGTTTAGC  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATTG-TACATGTGCTGTGGAGGTCTATGTTCCTTTAGGTTTAGC  196

seq1  TGCTGCCCGTCCTGAGATAAACAGGTTGACCTCAGATGAAAAGTAAGGCT  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCCGTCCTAAGATAAACAGGTTGACCTCAGATGAAAAGTAAGGCT  246

seq1  CAGAAAGGTTGACAATCTTGTCAAGGTCAAGGAGCAAAGATTTTAAGGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGTTGACAATCTTGTCAAGGTCAAGGAGCAAAGATTTTAAGGGA  296

seq1  ATGAAGCTCAGTCCACTGACATTGCTCCACTAGAATATCCCATGAAGCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTCAGTCCACTGACATTGCTCCACTAGAATATCCCATGAAGCAC  346

seq1  TGTATCTGGCACTTGGATGGGAATCCTTATTCTATCAACTGACCTACAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGGCACTTGGATGGGAATCCTTATTCTATCAACTGACCTACAAA  396

seq1  GGTGGGGGTCTTCCAAACATCTGAGCCAAATCCTGGGTGGAGAACTCTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTCTTCCAAACATCTGAGCCAAATCCTGGGTGGAGAACTCTGT  446

seq1  GGAAAAGGCTGAGTAGGTGATAGTGACATCTCCCCATCACCCAGAACTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGCTGAGTAGGTGATAGTGACATCTCCCCATCACCCAGAACTTG  496

seq1  AGACAAAAGCAGCAGTAAGGTCTCTTGTTCTTGAGGTTGAAGACCAAGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAGCAGCAGTAAGGTCTCTTGTTCTTGAGGTTGAAGACCAAGTA  546

seq1  AGTGGATCAAGTGGTTCAGAAGGACATGGTCCAGATGTCCATACCCAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATCAAGTGGTTCAGAAGGACATGGTCCAGATGTCCATACCCAGAA  596

seq1  TACCAAGGTAGGAGTAGAGCCAACCCAGGTCCAGTGGGATTTGTGGGCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGGTAGGAGTAGAGCCAACCCAGGTCCAGTGGGATTTGTGGGCTG  646

seq1  CCCAGTCAGCCAAAAGTCCCAAAACAGCAGCCACTATTAGGATAAACCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCAGCCAAAAGTCCCAAAACAGCAGCCACTATTAGGATAAACCAG  696

seq1  ATAGAGCTGAGCCTGGACTTGGAACAAAACTCATTTAGCCTGCACCGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTGAGCCTGGACTTGGAACAAAACTCATTTAGCCTGCACCGTGT  746

seq1  TATAAGGTAAGGATATGTGGTCAACACCAACCATTCAACAAGTCCACATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTAAGGATATGTGGTCAACACCAACCATTCAACAAGTCCACATA  796

seq1  AAACCTTTACAAATTAGCACATGTGGTAAGATTGGACTTATATCTAACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTACAAATTAGCACATGTGGTAAGATTGGACTTATATCTAACAC  846

seq1  AGCTAAAGAGAGGATCCCTGAGAACAAAGATGAATTC  886
      |||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAGAGAGGATCCCTGAGAACAAAGATGAATTC  883

seq1: chr6_88146746_88147269
seq2: B6Ng01-057B12.g_79_602

seq1  GCATGGGGTACCGTTGTCGAAAATGGGGTTATCGCCGGCTTTGAGAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  GCATGGGGTACCGTTGTCGAAAATGGGGTTATCGCCGGCTTTGATTGGCC  50

seq1  TTTAGAATCTCCTGCTAGGTTCCAGGGACATAGAACAATCTGGAAACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATCTCCTGCTAGGTTCCAGGGACATAGAACAATCTGGAAACTCC  100

seq1  ACGACGATTTCGCCTTGCTCGTTAATGGAGAATCATGGGCTAAAGGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACGATTTCGCCTTGCTCGTTAATGGAGAATCATGGGCTAAAGGCTGG  150

seq1  GAGAAGCCGAGAAAGCCTTCCCGAAAGCGGGTCCTAAGTGAACCGCGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCGAGAAAGCCTTCCCGAAAGCGGGTCCTAAGTGAACCGCGCAG  200

seq1  TGGGAGCGCGAATCTGGCTGGCACTGAGACCACCCACCTGCCCAGCCGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCGCGAATCTGGCTGGCACTGAGACCACCCACCTGCCCAGCCGAC  250

seq1  CCCGAGGCACTGCGGTCTCGCGCCCCTCTAGCCCCTGGATCCCTCTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGCACTGCGGTCTCGCGCCCCTCTAGCCCCTGGATCCCTCTTGCT  300

seq1  AGACCTCCCGCCTCGGCTGGGCGCGGACTCCCGAGCCTCCTGGGCCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCCCGCCTCGGCTGGGCGCGGACTCCCGAGCCTCCTGGGCCCCTG  350

seq1  ATGGCTCTGGAGCACAGAGGCGCGGGGAATACAGCGGACAGCAGGACCCC  400
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGGCTCTGGAGCACAGAGGCGCGGGGAATACAGCGTACAGCAGGACCCC  400

seq1  CCCCCCCCCGCGCCAGGGAGCAAGAGGCGCGGGTTTCCGGTCCAGTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCGCGCCAGGGAGCAAGAGGCGCGGGTTTCCGGTCCAGTGGAG  450

seq1  TTCTGCACCCCGGGCCCCAGGCCTTTACCTGTTCCAGGGCCTCGGACAGA  500
      |||||||||||||||||||||||||||||||||||||||| || |||| |
seq2  TTCTGCACCCCGGGCCCCAGGCCTTTACCTGTTCCAGGGCTTCTGACATA  500

seq1  CAGATGGACGCCAGCCGCAGAGGC  524
      |  |||||||||||||||| ||||
seq2  CTTATGGACGCCAGCCGCATAGGC  524