BAC Information

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BAC

Clone NameB6Ng01-057C03
Chromosome6 (Build37)
Map Location 107,739,189 - 107,740,232
singlet/doubletsinglet
Overlap genenone
Upstream geneCrbn, Ppia-ps6_1128.1, Lrrn1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2, Arl8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057C03.bB6Ng01-057C03.g
ACCDH879094DH879095
length1,0371,147
definitionDH879094|Mus musculus domesticus DNA, BAC clone: B6Ng01-057C03, 5' end.DH879095|Mus musculus domesticus DNA, BAC clone: B6Ng01-057C03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttccctcagaaaacagagaaggaaacaggacactgactgtta
ttatttcccacacagtagagcttagatggaaaacacctggtaatttcagg
atggagagggccatctgtgagactgtgtaaaaggcccaatgtaaatgcgt
tgccacttttcagtgttccagaatagaacctgattgttggtgaggtggtt
ttttgtataccagtggctttcaaaggagtcaatagtaaagagctgtgcac
caggacaaacaacctagcagccatagagagcagtaaataattgatcgttg
ttagttggcctacacaatactcggagtcaagtagctgcagctgccaagga
gcaggggaggtgtttctgacctgtctctttactctgtgttgtcttggccc
ctggggagaaaagaatcaataatgggatgagaaagtgactaagtgtactg
tagctttcattttggagagagcaagtcaggaattagtttgttagctcttc
aagatgtgttcttatttaaaaagtacaatctcaaacatgctgatgaggtg
ggaatatctaaaagatgacaggactttgaaatgggctttgaaattgatgt
cttcttgtatttaagatggctccaaacacaggcctcctaagtaaatacta
ttgccagtgaatgtgttgcagacagttctgccaaattgccaatcctggca
ggattattaccattattattattattattatattatatgacatgctggtt
aatttcagtaaaaattggctttgttcaaatggcaatggtatttaacctat
ttgtggtggtcctaaatggtgtagcaagtaggtatgttctctaacaatac
cataatacctgatgatagttaattaattcagtttggacatcaaaagaagg
cccgcccaccatgaagctgtggtccaaacgcagaaacttcagtgaagttt
gtttttaccatttatatgcatacatcatttatttaccaccccacatccga
ttattctgaatataaattctttaatcttttttttttg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
tggagagctagagaagtatccaaggagctaaagggatcttcaaccctata
ggtggaacaacattatgactaccagtaccctgagctcttgactctagctg
catatgtatcaaagatgctagcgcattcctgaaagagccctttgaaccca
actttggtgccgttcaggacccagggccaaggggggagatgtgtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107739189_107740232
seq2: B6Ng01-057C03.b_45_1081 (reverse)

seq1  CAAAAAAAAAAGATTAAAAGAAATTTATATATCAGAATAATCAGATTGTG  50
      ||||||||||||||||||   ||||||||| ||||||||||| || ||||
seq2  CAAAAAAAAAAGATTAAA--GAATTTATAT-TCAGAATAATCGGA-TGTG  46

seq1  GGGTGGTAAAATAAATGATGTATGCATATAAATGGGTAAAACAAACTTCA  100
      ||||||| |||||||||||||||||||||||||||  |||||||||||||
seq2  GGGTGGT-AAATAAATGATGTATGCATATAAATGGTAAAAACAAACTTCA  95

seq1  CTGAAGTGTTCTGCGTTTGGGCCACAGCTTCCATGGTGGGCGGGCCTTCT  150
      ||||||| |||||||||||| ||||||||| |||||||||||||||||||
seq2  CTGAAGT-TTCTGCGTTTGGACCACAGCTT-CATGGTGGGCGGGCCTTCT  143

seq1  TTTGATGTCCAAACTGAATTAATTAACTATCATCAGGTATTATGGTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTCCAAACTGAATTAATTAACTATCATCAGGTATTATGGTATTG  193

seq1  TTAGAGAACATACCTACTTGCTACACCATTTAGGACCACCACAAATAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAACATACCTACTTGCTACACCATTTAGGACCACCACAAATAGGT  243

seq1  TAAATACCATTGCCATTTGAACAAAGCCAATTTTTACTGAAATTAACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCATTGCCATTTGAACAAAGCCAATTTTTACTGAAATTAACCAG  293

seq1  CATGTCATATAATATAATAATAATAATAATAATGGTAATAATCCTGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCATATAATATAATAATAATAATAATAATGGTAATAATCCTGCCAG  343

seq1  GATTGGCAATTTGGCAGAACTGTCTGCAACACATTCACTGGCAATAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCAATTTGGCAGAACTGTCTGCAACACATTCACTGGCAATAGTAT  393

seq1  TTACTTAGGAGGCCTGTGTTTGGAGCCATCTTAAATACAAGAAGACATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAGGAGGCCTGTGTTTGGAGCCATCTTAAATACAAGAAGACATCA  443

seq1  ATTTCAAAGCCCATTTCAAAGTCCTGTCATCTTTTAGATATTCCCACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAGCCCATTTCAAAGTCCTGTCATCTTTTAGATATTCCCACCTC  493

seq1  ATCAGCATGTTTGAGATTGTACTTTTTAAATAAGAACACATCTTGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATGTTTGAGATTGTACTTTTTAAATAAGAACACATCTTGAAGAG  543

seq1  CTAACAAACTAATTCCTGACTTGCTCTCTCCAAAATGAAAGCTACAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAACTAATTCCTGACTTGCTCTCTCCAAAATGAAAGCTACAGTAC  593

seq1  ACTTAGTCACTTTCTCATCCCATTATTGATTCTTTTCTCCCCAGGGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTCACTTTCTCATCCCATTATTGATTCTTTTCTCCCCAGGGGCCA  643

seq1  AGACAACACAGAGTAAAGAGACAGGTCAGAAACACCTCCCCTGCTCCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACACAGAGTAAAGAGACAGGTCAGAAACACCTCCCCTGCTCCTTG  693

seq1  GCAGCTGCAGCTACTTGACTCCGAGTATTGTGTAGGCCAACTAACAACGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCAGCTACTTGACTCCGAGTATTGTGTAGGCCAACTAACAACGA  743

seq1  TCAATTATTTACTGCTCTCTATGGCTGCTAGGTTGTTTGTCCTGGTGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTATTTACTGCTCTCTATGGCTGCTAGGTTGTTTGTCCTGGTGCAC  793

seq1  AGCTCTTTACTATTGACTCCTTTGAAAGCCACTGGTATACAAAAAACCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTACTATTGACTCCTTTGAAAGCCACTGGTATACAAAAAACCAC  843

seq1  CTCACCAACAATCAGGTTCTATTCTGGAACACTGAAAAGTGGCAACGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAACAATCAGGTTCTATTCTGGAACACTGAAAAGTGGCAACGCAT  893

seq1  TTACATTGGGCCTTTTACACAGTCTCACAGATGGCCCTCTCCATCCTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGGGCCTTTTACACAGTCTCACAGATGGCCCTCTCCATCCTGAA  943

seq1  ATTACCAGGTGTTTTCCATCTAAGCTCTACTGTGTGGGAAATAATAACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAGGTGTTTTCCATCTAAGCTCTACTGTGTGGGAAATAATAACAG  993

seq1  TCAGTGTCCTGTTTCCTTCTCTGTTTTCTGAGGGAAATGAATTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCCTGTTTCCTTCTCTGTTTTCTGAGGGAAATGAATTC  1037