BAC Information

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BAC

Clone NameB6Ng01-057D01
Chromosome6 (Build37)
Map Location 71,764,796 - 71,842,358
singlet/doubletdoublet
Overlap geneMrpl35, Immt, Ptcd3
Upstream geneEif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1
Downstream geneRpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057D01.bB6Ng01-057D01.g
ACCDH879134DH879135
length1,1551,123
definitionDH879134|Mus musculus domesticus DNA, BAC clone: B6Ng01-057D01, 5' end.DH879135|Mus musculus domesticus DNA, BAC clone: B6Ng01-057D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,764,796 - 71,765,962)(71,841,227 - 71,842,358)
sequence
gaattctggaaaaaaaaagctgatctttaccaatgaaaataagaaatctt
aagtggataaactttttaaaaattcagtgcctttgaaaaattgggcagag
gcctggagagacagttcagcatttaagaactggctgttcttgtagagggc
ccaggttcaattcccagcaccaacatggtggctcacaaccatctgtaatt
ccaatgccagtagacccaacaactttcctctggccttcaagggcacatac
acacatgcagacaaaatactcatatgtaaaaaataaaaagtaaagtagaa
aagaaaaactgggcaaaagagtttattatatagctatgtatttcaagaag
ggtatttgggaaggtgatttatttttatgaaaagtatcctgttacaataa
aattagtaataactgtcataaatacaaagaacccaggacacaagatgaaa
gtgccctgctactctatgtacctctaaggaaaacagctcacacctacctt
tttactccatatgaacctactgatacaactaagagagcctgggtggagtc
ctagccacaaacagataagctctacattgcatgatggcattgattcagac
ttacgaggaaaaggcaggatggcccaatgagagttccctggcaattaaga
gagaagagatgacaagagttgagggttgtaatgttaaagggaacccaaag
gttcaggctgaagggagtctgagagatagaaacttttacataaacaaaag
ccaagactaaagagagtgatggtgagtagacacacacacacacacacaca
ccacacactctcacagtagaaccaaggcataaagtcccaccatctcttgc
ttcatccaattcctgccctcccaaagctggggcagagagttacaggtagg
agacagtgaggaggttcctgagttcctaggtatttatttttttaacacag
catgttgtcattattggaataggcatgtaagatgtctgtttagcatgtgc
aaaactctggataccatctcaattccacacaaggccactttgagcgtctt
tttcgtgttttctcatcaggattccagaataaggaaggcattaccagttt
ttgaataagggcaaacaatttacttttgttctatgaccaacttgggaatg
tttaa
gaattcactgggcgtagtggtgagtacctttatttaatcagaacactcag
gatggggaggcaggtggatctctgagttcaagggcagcctggtctaccta
cagagggagttccaggacagccagggctacataaaccatgttttctggaa
gaaaaaagaaataaaagagttcagaggtgggaaaaaacagtgactgctct
tccataagacccaggttcaattcccagcacccatgtgatggcttaaaatc
atctataactccagttgcagtggatcctaagctgcttctggcctccagga
catgcataagcagacaaatacccatgcacgtgaaataaaaataaataata
atttaaaaatagaattcaaccctacatggttgccttcctataatcctgca
ccagcacttaggagggagaagcagaatcaaggttggagacatggtgtgac
tagtggtacccttgattgcaatataaaatacaaacttggagagggctatc
aagtgtactatatcattcttgcactacaaaaaagaataggcaaggtgggt
tgtaattaagggtttcttttggtctttagaactgtgctactcagtataat
cgcttagtagccataagtaattacgtagtttatattatttttaaaatctt
gacattaagtcttaccattcattctctttcctttgtgggttctaagaatc
aaactccatcatcaggcttggcagcagttgcccttgtgtgacaccgagcc
atctagtgccccacaatgtgccctttcttaatctgccatctacactcttt
gccagttatcttcctcagtgattcctcttctcctctcacatcttcatata
tgaacatatgcacctctgtaatctagatgttatttgaaagagaaatgtaa
tatttgtgtgaatttacataactgtacttaatatgatatttccattctgt
tttcctcaaatgggacttaactgttgccttaaaagaactctatcatgtat
ttcagacctgctggcactgtctataatcacagatttgatagtcagagcag
catgtttagatgttttcagccagccaatgctttattgagtctcaaaaaag
gggaagaggggatctagagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_71764796_71765962
seq2: B6Ng01-057D01.b_47_1201

seq1  GAATTCTGGAAAAAAAAAGCTGATCTTTACCAATGAAAATAAGAAATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAAAAAAAAAGCTGATCTTTACCAATGAAAATAAGAAATCTT  50

seq1  AAGTGGATAAACTTTTTAAAAATTCAGTGCCTTTGAAAAATTGGGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATAAACTTTTTAAAAATTCAGTGCCTTTGAAAAATTGGGCAGAG  100

seq1  GCCTGGAGAGACAGTTCAGCATTTAAGAACTGGCTGTTCTTGTAGAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAGAGACAGTTCAGCATTTAAGAACTGGCTGTTCTTGTAGAGGGC  150

seq1  CCAGGTTCAATTCCCAGCACCAACATGGTGGCTCACAACCATCTGTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTCAATTCCCAGCACCAACATGGTGGCTCACAACCATCTGTAATT  200

seq1  CCAATGCCAGTAGACCCAACAACTTTCCTCTGGCCTTCAAGGGCACATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCCAGTAGACCCAACAACTTTCCTCTGGCCTTCAAGGGCACATAC  250

seq1  ACACATGCAGACAAAATACTCATATGTAAAAAATAAAAAGTAAAGTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCAGACAAAATACTCATATGTAAAAAATAAAAAGTAAAGTAGAA  300

seq1  AAGAAAAACTGGGCAAAAGAGTTTATTATATAGCTATGTATTTCAAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACTGGGCAAAAGAGTTTATTATATAGCTATGTATTTCAAGAAG  350

seq1  GGTATTTGGGAAGGTGATTTATTTTTATGAAAAGTATCCTGTTACAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTGGGAAGGTGATTTATTTTTATGAAAAGTATCCTGTTACAATAA  400

seq1  AATTAGTAATAACTGTCATAAATACAAAGAACCCAGGACACAAGATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTAATAACTGTCATAAATACAAAGAACCCAGGACACAAGATGAAA  450

seq1  GTGCCCTGCTACTCTATGTACCTCTAAGGAAAACAGCTCACACCTACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTGCTACTCTATGTACCTCTAAGGAAAACAGCTCACACCTACCTT  500

seq1  TTTACTCCATATGAACCTACTGATACAACTAAGAGAGCCTGGGTGGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCCATATGAACCTACTGATACAACTAAGAGAGCCTGGGTGGAGTC  550

seq1  CTAGCCACAAACAGATAAGCTCTACATTGCATGATGGCATTGATTCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCACAAACAGATAAGCTCTACATTGCATGATGGCATTGATTCAGAC  600

seq1  TTACGAGGAAAAGGCAGGATGGCCCAATGAGAGTTCCCTGGCAATTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGAGGAAAAGGCAGGATGGCCCAATGAGAGTTCCCTGGCAATTAAGA  650

seq1  GAGAAGAGATGACAAGAGTTGAGGGTTGTAATGTTAAAGGGAACCCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGATGACAAGAGTTGAGGGTTGTAATGTTAAAGGGAACCCAAAG  700

seq1  GTTCAGGCTGAAGGGAGTCTGAGAGATAGAAAC-TTTACATAAACAAAAG  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTCAGGCTGAAGGGAGTCTGAGAGATAGAAACTTTTACATAAACAAAAG  750

seq1  CCAAGACTAAAGAGAGTGATGGTGAGTAGACACACACACACACACACACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACTAAAGAGAGTGATGGTGAGTAGACACACACACACACACACACA  800

seq1  CCACACACTCTCACAGTAGAACCAAGGCATAAAGTCCCACCATCTCTTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACTCTCACAGTAGAACCAAGGCATAAAGTCCCACCATCTCTTGC  850

seq1  TTCATCCAATTCCTGCCCTCCCCAAAGCTGGGGCAGAGAGTTACAGGTAG  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCATCCAATTCCTGCCCT-CCCAAAGCTGGGGCAGAGAGTTACAGGTAG  899

seq1  GAGACAGTGAGGAGGTTCCTGAGTTCCTAGGTATTTATTTTTTAAACACA  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGACAGTGAGGAGGTTCCTGAGTTCCTAGGTATTTATTTTTTTAACACA  949

seq1  GCATG-TGTCATATTGGGAATAGGCATGTAAGATGTCTGTTTAGCATGTG  998
      ||||| ||||||  | ||||||||||||||||||||||||||||||||||
seq2  GCATGTTGTCATTATTGGAATAGGCATGTAAGATGTCTGTTTAGCATGTG  999

seq1  CAAAAACCTGGATACCATCTCAATTCCACACAAAGGCCCACTGTTGAGCG  1048
      |||||  ||||||||||||||||||||||||||  | ||||| |||||||
seq2  CAAAACTCTGGATACCATCTCAATTCCACACAA--GGCCACT-TTGAGCG  1046

seq1  TC-TTTTCGTGTTTTTCCTCATCCAAGATTCCAGAAATAAGGAAAGCCAT  1097
      || ||||||||||||  ||||| || |||||||| ||||||| ||| |||
seq2  TCTTTTTCGTGTTTT--CTCAT-CAGGATTCCAG-AATAAGG-AAGGCAT  1091

seq1  TACCAGTTTTTTGAAATAATGCACAATAAATTTAACTTTTAGTTCTATGA  1147
      |||||||||||   ||||| |  |||  ||||| |||||| |||||||||
seq2  TACCAGTTTTT--GAATAA-GGGCAAACAATTT-ACTTTT-GTTCTATGA  1136

seq1  CCAACTCTGGGAATGTTTAA  1167
      |||||| |||||||||||||
seq2  CCAACT-TGGGAATGTTTAA  1155

seq1: chr6_71841227_71842358
seq2: B6Ng01-057D01.g_68_1190 (reverse)

seq1  TCTTC-CTAGATCCCCTCTATCCCCTTTTCTGAGACTC-ATATAGCATTT  48
      ||||| ||||||||||||| ||||||||| |||||||| ||| |||||| 
seq2  TCTTCTCTAGATCCCCTCT-TCCCCTTTTTTGAGACTCAATAAAGCATTG  49

seq1  GCTGGCCTGGAAAACATCT-AACATGCTTGCTCTGACTTATCAAATTCTG  97
      ||||||   |||||||||| ||||||| ||||||||| ||||||| ||||
seq2  GCTGGC--TGAAAACATCTAAACATGC-TGCTCTGAC-TATCAAA-TCTG  94

seq1  TGATTATAGACAGGTGCCAGCAGGTCTGAAATACATGATAGAGGTCTTTT  147
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  TGATTATAGACA-GTGCCAGCAGGTCTGAAATACATGATAGAGTTCTTTT  143

seq1  TAAGGGCAACAGTTAAGTCCCATTTGTAGGAAAACAGAATTGGAAATAAT  197
        | |||||||||||||||||||||| |||||||||||| ||||||| ||
seq2  --AAGGCAACAGTTAAGTCCCATTTG-AGGAAAACAGAA-TGGAAAT-AT  188

seq1  CATATTAAGTACAGTTATGTTACATTCACACAAATATTACATTTCTCTTT  247
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  CATATTAAGTACAGTTATG-TAAATTCACACAAATATTACATTTCTCTTT  237

seq1  CAAATAACATCTAGATTACAGAGGTGCATATGTTCATATATG-AGATGTG  296
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAAATAACATCTAGATTACAGAGGTGCATATGTTCATATATGAAGATGTG  287

seq1  AGAGGAGAAGAGGAATCACTGAGGAAGATAACTGGCAAAGAGTGTAGATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAAGAGGAATCACTGAGGAAGATAACTGGCAAAGAGTGTAGATG  337

seq1  GCAGATTAAGAAAGGGCACATTGTGGGGCACTAGATGGCTCGGTGTCACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTAAGAAAGGGCACATTGTGGGGCACTAGATGGCTCGGTGTCACA  387

seq1  CAAGGGCAACTGCTGCCAAGCCTGATGATGGAGTTTGATTCTTAGAACCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCAACTGCTGCCAAGCCTGATGATGGAGTTTGATTCTTAGAACCC  437

seq1  ACAAAGGAAAGAGAATGAATGGTAAGACTTAATGTCAAGATTTTAAAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGAAAGAGAATGAATGGTAAGACTTAATGTCAAGATTTTAAAAAT  487

seq1  AATATAAACTACGTAATTACTTATGGCTACTAAGCGATTATACTGAGTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAACTACGTAATTACTTATGGCTACTAAGCGATTATACTGAGTAG  537

seq1  CACAGTTCTAAAGACCAAAAGAAACCCTTAATTACAACCCACCTTGCCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCTAAAGACCAAAAGAAACCCTTAATTACAACCCACCTTGCCTA  587

seq1  TTCTTTTTTGTAGTGCAAGAATGATATAGTACACTTGATAGCCCTCTCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTGTAGTGCAAGAATGATATAGTACACTTGATAGCCCTCTCCA  637

seq1  AGTTTGTATTTTATATTGCAATCAAGGGTACCACTAGTCACACCATGTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTATTTTATATTGCAATCAAGGGTACCACTAGTCACACCATGTCT  687

seq1  CCAACCTTGATTCTGCTTCTCCCTCCTAAGTGCTGGTGCAGGATTATAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTTGATTCTGCTTCTCCCTCCTAAGTGCTGGTGCAGGATTATAGG  737

seq1  AAGGCAACCATGTAGGGTTGAATTCTATTTTTAAATTATTATTTATTTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACCATGTAGGGTTGAATTCTATTTTTAAATTATTATTTATTTTT  787

seq1  ATTTCACGTGCATGGGTATTTGTCTGCTTATGCATGTCCTGGAGGCCAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACGTGCATGGGTATTTGTCTGCTTATGCATGTCCTGGAGGCCAGA  837

seq1  AGCAGCTTAGGATCCACTGCAACTGGAGTTATAGATGATTTTAAGCCATC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTAGGATCCACTGCAACTGGAGTTATAGATGATTTTAAGCCATC  887

seq1  ACATGGGTGCTGGGAATTGAACCTGGGTCTTATGGAAGAGCAGTCACTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGTGCTGGGAATTGAACCTGGGTCTTATGGAAGAGCAGTCACTGT  937

seq1  TTTTTCCCACCTCTGAACTCTTTTATTTCTTTTTTCTTCCAGAAAACATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCACCTCTGAACTCTTTTATTTCTTTTTTCTTCCAGAAAACATG  987

seq1  GTTTATGTAGCCCTGGCTGTCCTGGAACTCCCTCTGTAGGTAGACCAGGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTAGCCCTGGCTGTCCTGGAACTCCCTCTGTAGGTAGACCAGGC  1037

seq1  TGCCCTTGAACTCAGAGATCCACCTGCCTCCCCATCCTGAGTGTTCTGAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTGAACTCAGAGATCCACCTGCCTCCCCATCCTGAGTGTTCTGAT  1087

seq1  TAAATAAAGGTACTCACCACTACGCCCAGTGAATTC  1132
      ||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAGGTACTCACCACTACGCCCAGTGAATTC  1123