BAC Information

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BAC

Clone NameB6Ng01-057H12
Chromosome6 (Build37)
Map Location 55,754,755 - 55,883,227
singlet/doubletdoublet
Overlap geneCcdc129
Upstream geneZnrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
Downstream geneGsbs, LOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057H12.bB6Ng01-057H12.g
ACCDH879327DH879328
length8451,113
definitionDH879327|Mus musculus domesticus DNA, BAC clone: B6Ng01-057H12, 5' end.DH879328|Mus musculus domesticus DNA, BAC clone: B6Ng01-057H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,882,388 - 55,883,227)(55,754,755 - 55,755,886)
sequence
gaattcttcccactaggtctagcctttaacatttctgtcacttccccaaa
gcacactggaaacaagcctttgctatgtgggcatttggggtcattccata
tccaaacgtttactgattctttttaaacctatgtttgatggtaaaattgc
tcagaggtgtcaccagaggtctgtacatgtagacaaactcatcaatatga
gtacagaaatgtatttatattaggttatgctatacagctttatgagattt
acctcaggaaggcaagaatacttttacatcagaaaattactcaatatatt
atacaataaatgaaagaatcatgtttatggctatatcaaacaattacaaa
gaaattattaggcaaaatacaataatccttaatgatagaaaacactcaaa
ttacaaataagctgacttttatctgaaaaggggcatctataaaaagaata
tagtatatattgtacttaatgttaaaagagtgaatgcttacttccaaaga
ttagcagcacaagatatccactctctgttcttttatttctaggacaattt
aatcaatcaatcaatcaatcaatcaatcggtcaatccagaatatatgaag
aattaacattagatttgcaggtgccacatacgtatgttctatgtagtcat
ataacatactacattgtctcccatttcatggatcatctgcttttctgttg
ataagcccaaactggaatttcagtttcagattatgaagtcttatatgtct
cagtttctctttttcatttattccttttggcaaaactaagactcatttga
tagtacactgtacattgatttggctctaatgaacaatttcataat
gaattcatttttagaggggacatgagcaggtgaacacaaatgatcataca
gtgggaggaaaccaccatatgggctcgtgccactccaggagagcctcaag
tactgagaagcaataggaaagtccttgtgtccagagcagcaactcagaga
aaggaagctttgcagagctaatgggagaggcagagggacccatttcatag
ctgagaatacagaggaattgaaatcaatcgtttgcttgtgcggtagcaca
gggaatcaggctagaggtaaaccttctcatctgtagaacatgggcaatgg
ttctgctgcccagctgggtggctctgttcagctctgtagccgtgctgaac
agatacgtatcaccattttgctgttgtggagcctgaagatcgaatggggt
gtacaaatgtgtatacacgcccctctgaaactgtgagaggtacattgagc
cctctagtgcttccagagtttccagaatgcaaatgcctaccccaccataa
gaagcagagagaagccaggaagagtgtgactgcagggagctgaactcaaa
gaaagattctcatcattactgaaagaaatggcttcgagaagggcaagagg
aaaacagcagagcgaggaggctgagcggagttgctgccaggagagcgtcc
aaagtgatggcagctgacgcgagagctgtatttcaggatctttcacccac
ttgcacatttgtcacttggagatgctaacaaaggcccacagtggagatct
gctgtcttgccattgagcctctctatgagggcatggcaattaaacaaaga
agccagaagcatgagaaaccaaacaacaggaggctgactgtatggtggag
gtcagtgcacattagtgaactcagttgatgccattccagaacattctcat
tttcctcttggcatagagcttactctgagatcccattatctgggacagca
gcaaccatcagtatctgccctgcttgctctactgtcaggactgttctgtc
agtatgatgataactcactcaacagtcagaagctgtaataatggaccagt
ggccttcttcagaatgacgtgaaccgagcagcactttcgagtctcctttc
aggaaacaggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_55882388_55883227
seq2: B6Ng01-057H12.b_49_893 (reverse)

seq1  ATAATGAAATAGTTCA-TAGAG-CAAATCATTGTACAGTGTACTATGCAA  48
      || ||||||| ||||| ||||| ||||||| |||||||||||||||  ||
seq2  ATTATGAAATTGTTCATTAGAGCCAAATCAATGTACAGTGTACTATCAAA  50

seq1  TGAGGTCTTAGTTTTGCC-AAAGGAATAATTG-AAAAGAGAAACTGAGAC  96
      ||| |||||||||||||| |||||||||| || |||||||||||||||||
seq2  TGA-GTCTTAGTTTTGCCAAAAGGAATAAATGAAAAAGAGAAACTGAGAC  99

seq1  ATATAAGACTTCATAATCTGAAACTG-AATTCCAG-TTGGGCTTATCAAC  144
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  ATATAAGACTTCATAATCTGAAACTGAAATTCCAGTTTGGGCTTATCAAC  149

seq1  AGAAAAGCAGATGATCCATGAAATGGGAGACAATGTAGTATGTTATATGA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCAGATGATCCATGAAATGGGAGACAATGTAGTATGTTATATGA  199

seq1  CTACATAGAACATACGTATGTGGCACCTGCAAATCTAATGTTAATTCTTC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGAACATACGTATGTGGCACCTGCAAATCTAATGTTAATTCTTC  249

seq1  ATATATTCTGGATTGACCGATTGATTGATTGATTGATTGATTGATTAAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCTGGATTGACCGATTGATTGATTGATTGATTGATTGATTAAAT  299

seq1  TGTCCTAGAAATAAAAGAACAGAGAGTGGATATCTTGTGCTGCTAATCTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAGAAATAAAAGAACAGAGAGTGGATATCTTGTGCTGCTAATCTT  349

seq1  TGGAAGTAAGCATTCACTCTTTTAACATTAAGTACAATATATACTATATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTAAGCATTCACTCTTTTAACATTAAGTACAATATATACTATATT  399

seq1  CTTTTTATAGATGCCCCTTTTCAGATAAAAGTCAGCTTATTTGTAATTTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATAGATGCCCCTTTTCAGATAAAAGTCAGCTTATTTGTAATTTG  449

seq1  AGTGTTTTCTATCATTAAGGATTATTGTATTTTGCCTAATAATTTCTTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTCTATCATTAAGGATTATTGTATTTTGCCTAATAATTTCTTTG  499

seq1  TAATTGTTTGATATAGCCATAAACATGATTCTTTCATTTATTGTATAATA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTTGATATAGCCATAAACATGATTCTTTCATTTATTGTATAATA  549

seq1  TATTGAGTAATTTTCTGATGTAAAAGTATTCTTGCCTTCCTGAGGTAAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGTAATTTTCTGATGTAAAAGTATTCTTGCCTTCCTGAGGTAAAT  599

seq1  CTCATAAAGCTGTATAGCATAACCTAATATAAATACATTTCTGTACTCAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAAGCTGTATAGCATAACCTAATATAAATACATTTCTGTACTCAT  649

seq1  ATTGATGAGTTTGTCTACATGTACAGACCTCTGGTGACACCTCTGAGCAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGAGTTTGTCTACATGTACAGACCTCTGGTGACACCTCTGAGCAA  699

seq1  TTTTACCATCAAACATAGGTTTAAAAAGAATCAGTAAACGTTTGGATATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCATCAAACATAGGTTTAAAAAGAATCAGTAAACGTTTGGATATG  749

seq1  GAATGACCCCAAATGCCCACATAGCAAAGGCTTGTTTCCAGTGTGCTTTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACCCCAAATGCCCACATAGCAAAGGCTTGTTTCCAGTGTGCTTTG  799

seq1  GGGAAGTGACAGAAATGTTAAAGGCTAGACCTAGTGGGAAGAATTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTGACAGAAATGTTAAAGGCTAGACCTAGTGGGAAGAATTC  845

seq1: chr6_55754755_55755886
seq2: B6Ng01-057H12.g_68_1180

seq1  GAATTCATTTTTAGAGGGGACATGAGCAGGTGAACACAAATGATCATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTAGAGGGGACATGAGCAGGTGAACACAAATGATCATACA  50

seq1  GTGGGAGGAAACCACCATATGGGCTCGTGCCACTCCAGGAGAGCCTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGGAAACCACCATATGGGCTCGTGCCACTCCAGGAGAGCCTCAAG  100

seq1  TACTGAGAAGCAATAGGAAAGTCCTTGTGTCCAGAGCAGCAACTCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGAAGCAATAGGAAAGTCCTTGTGTCCAGAGCAGCAACTCAGAGA  150

seq1  AAGGAAGCTTTGCAGAGCTAATGGGAGAGGCAGAGGGACCCATTTCATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGCTTTGCAGAGCTAATGGGAGAGGCAGAGGGACCCATTTCATAG  200

seq1  CTGAGAATACAGAGGAATTGAAATCAATCGTTTGCTTGTGCGGTAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATACAGAGGAATTGAAATCAATCGTTTGCTTGTGCGGTAGCACA  250

seq1  GGGAATCAGGCTAGAGGTAAACCTTCTCATCTGTAGAACATGGGCAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCAGGCTAGAGGTAAACCTTCTCATCTGTAGAACATGGGCAATGG  300

seq1  TTCTGCTGCCCAGCTGGGTGGCTCTGTTCAGCTCTGTAGCCGTGCTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGCCCAGCTGGGTGGCTCTGTTCAGCTCTGTAGCCGTGCTGAAC  350

seq1  AGATACGTATCACCATTTTGCTGTTGTGGAGCCTGAAGATCGAATGGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACGTATCACCATTTTGCTGTTGTGGAGCCTGAAGATCGAATGGGGT  400

seq1  GTACAAATGTGTATACACGCCCCTCTGAAACTGTGAGAGGTACATTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAATGTGTATACACGCCCCTCTGAAACTGTGAGAGGTACATTGAGC  450

seq1  CCTCTAGTGCTTCCAGAGTTTCCAGAATGCAAATGCCTACCCCACCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGTGCTTCCAGAGTTTCCAGAATGCAAATGCCTACCCCACCATAA  500

seq1  GAAGCAGAGAGAAGCCAGGAAGAGTGTGACTGCAGGGAGCTGAACTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAGAGAAGCCAGGAAGAGTGTGACTGCAGGGAGCTGAACTCAAA  550

seq1  GAAAGATTCTCATCATTACTGAAAGAAATGGCTTCGAGAAGGGCAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTCTCATCATTACTGAAAGAAATGGCTTCGAGAAGGGCAAGAGG  600

seq1  AAAACAGCAGAGCGAGGAGGCTGAGCGGAGTTGCTGCCAGGAGAGCGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCAGAGCGAGGAGGCTGAGCGGAGTTGCTGCCAGGAGAGCGTCC  650

seq1  AAAGTGATGGCAGCTGACGCGAGAGCTGTATTTCAGGATCTTTCACCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGATGGCAGCTGACGCGAGAGCTGTATTTCAGGATCTTTCACCCAC  700

seq1  TTGCACATTTGTCACTTGGAGATGCTAACAAAGGCCCACAGTGGAGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACATTTGTCACTTGGAGATGCTAACAAAGGCCCACAGTGGAGATCT  750

seq1  GCTGTCTTGCCATTGAGCCTCTCTATGAGGGCATGGCAATTAAACAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTGCCATTGAGCCTCTCTATGAGGGCATGGCAATTAAACAAAGA  800

seq1  AGCCAGAAGCATGAGAAACCAAACAACAGGAGGCTGACTGTATGGTGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAGCATGAGAAACCAAACAACAGGAGGCTGACTGTATGGTGGAG  850

seq1  GTCAGTGCACATTAGTGAACTCAGTTGATGCCATTCCAGAACATTCTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGCACATTAGTGAACTCAGTTGATGCCATTCCAGAACATTCTCAT  900

seq1  TTTCCTCTTGGCATAGAGCTTACTCTGAGGATCCCCATTATCTGGGACAG  950
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  TTTCCTCTTGGCATAGAGCTTACTCTGA-GAT-CCCATTATCTGGGACAG  948

seq1  CAGCAACCATCAGTATCTGCCCTGCTTGGCCTCTACTGTCAGGGACCTGT  1000
      ||||||||||||||||||||||||||||  |||||||||||||   ||||
seq2  CAGCAACCATCAGTATCTGCCCTGCTTG--CTCTACTGTCAGG--ACTGT  994

seq1  TCTGTTCAAGTAATGATGATAAACTCACTCAACAAGTTCCAGAGGCTGTA  1050
      |||||   ||| |||||||| |||||||||||| |||  |||| ||||| 
seq2  TCTGT--CAGT-ATGATGAT-AACTCACTCAAC-AGT--CAGAAGCTGT-  1036

seq1  AATAATGGACCCAGTGGCCCTTCTTCAG-ATGACAGTGAACCGAAGCAGC  1099
      ||||||||| ||||||| |||||||||| ||||| |||||||| ||||||
seq2  AATAATGGA-CCAGTGG-CCTTCTTCAGAATGAC-GTGAACCG-AGCAGC  1082

seq1  ACTTTCGAGTCTCCTTTACAAGAAACAAGGGGT  1132
      ||||||||||||||||| || ||||| ||||||
seq2  ACTTTCGAGTCTCCTTT-CAGGAAAC-AGGGGT  1113