BAC Information

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BAC

Clone NameB6Ng01-057P10
Chromosome6 (Build37)
Map Location 67,884,029 - 67,998,871
singlet/doubletdoublet
Overlap geneIgk, EG243431, EG628144, Igkv1-122, EG667435
Upstream geneGng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218
Downstream geneEG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057P10.bB6Ng01-057P10.g
ACCDH879671DH879672
length1,0931,102
definitionDH879671|Mus musculus domesticus DNA, BAC clone: B6Ng01-057P10, 5' end.DH879672|Mus musculus domesticus DNA, BAC clone: B6Ng01-057P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,997,766 - 67,998,871)(67,884,029 - 67,885,154)
sequence
gaattcttatcacacctcctttaatgatatgtgcaaatacaaaggttatt
ccagaaacattcaactttcctttatcaataggacttagattgaactaaga
actaaatgactttgttttcatttatattttcccaggaaactgaattgatg
atagaaaattgaacatcgtaaccttcaaaaaacattcaacaatttcttaa
tagacactatctcccacacattgaatacatacctgtacatgctgagattt
gtgtgtctccctaatctgtttataaataaataggccttctgaattttttc
agacttcaaaaatttcatgttttaaggagaggataaaagctaatgatttg
gaaataatggacctcactgaatgtgattgtttgtatattcttggaccagg
gagtggcaccatttggaggtgtggccttgttggaataggtgtgacctggt
tggagtaggtgtgtcactgtgggtgtgggcttaagatcctcatactagtt
gcctggaagtcagtcttccactagcagcctttggatgaagttgtaggact
ctcagctctgcctgtgccatgcctgcctggatactgccaagcttccacct
tgatgataatggactgaacctctgaacctgtaagacagccccaattaaat
gttgttttcgtacgacttgccttggtcatgttgtctgttcacatcagtaa
aaccctaaataaggcactgaacctttccataactcttcaagtctaggatc
taaaaattgaaattgacatgtcaaaatgacttctcaggtatagttatgag
tttggttagaaatgcatgctctgaaatatatgggtggaatcacatgtgtt
tttctagtagggaaaaggagttgagctatgcagatttgttgctacaatga
aaagagattgtggggtatactgtctattgttcagttaagtggtagtttcc
tggaaattatagcattacgctgtgatacctggactctagagtgctcttca
atctccttatcttgaggttattcagaagatggttacatctcagagcttta
aggaacctatagtttatcgttgtgattctatttggcattagca
gaattcattcaattccattccacagtctccctatgctgctcattctgctt
tattttgctttcttttcattcataatattcattagaaattaaaaatataa
gtcatctattctcctcttccctttaactctgaaacacttattctcaccaa
tttcatttcaactacaatttttagttgactcagtgattgaattttctttc
cttgcatgggtatgaattggggctaatttactagaacataacagtttttc
aatggctacaccactgaggaaaatgtcacagcctttcctagcagctatta
actgctaataggctgttactaaagagtaggaactcattagaccattcttt
ttcatgataaaataatgttgtatctaattttgagaaggtaagcatagtat
cgtgcttatgagtacagggactgtcttagtcagggtttctattcctgcac
aaacatcatgaccaagaagcaagttggggaggaaagggtttatttggctt
acacttccatactgctgttcatcaccaaaggaagttaggactggaactca
agcaggtcagaaagcaggagctgatgcagaggccatggagggatgttcct
tactggcttgcttcccctggcttgctcagcctgctcttttatagaaccca
agtgtaccagcccagagatggtcccacccacaaggggcctttcccccttg
atcactaattgaggaaatgccttacagttggatctcatggaggcatttcc
tcaactgaagctcctttctctgtgataactccagctgtgtcgagttgaca
caaaactagccagtacagggaccatgtctagaatccccttttcccaggtt
ttcttgttattctttggttcttacatttccactacatgctatttgagatg
ttctttagcctgaaaaatgatgttcatttttttctgttgaggattaagtg
tgacactctagttatctagcaaatagagctttttattagacaaattaaga
cactgtacatcagttaataaatgacttagcatactatgataccaggagta
aatactaggttaataagaataatattatttattctgtatgggtattacat
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_67997766_67998871
seq2: B6Ng01-057P10.b_47_1139 (reverse)

seq1  TGCTAAATGCC-AATAGCATCACAACTGATTAAAACTATAGTTTCCTTAC  49
      |||| |||||| ||||| |||||||| |||  ||||||||| ||||||| 
seq2  TGCT-AATGCCAAATAGAATCACAAC-GAT--AAACTATAGGTTCCTTAA  46

seq1  AGCTCTG-GATGTTAACCATCTCCTGAATTAACCTCAAGGATAAGGAGAT  98
      ||||||| |||| ||||||||| ||||| ||||||||| |||||||||||
seq2  AGCTCTGAGATG-TAACCATCTTCTGAA-TAACCTCAA-GATAAGGAGAT  93

seq1  TGGAGAGCAACTTCTAGAGTCCAGGTATCACAGCGTAATGCTAATAAATT  148
      || ||||||   |||||||||||||||||||||||||||||||   ||||
seq2  TGAAGAGCA--CTCTAGAGTCCAGGTATCACAGCGTAATGCTA--TAATT  139

seq1  TCCAGGAAACTACCACCTTAACCTGAACAATAGACAGTATACCCCACAAT  198
      ||||||||||||||| ||||| ||||||||||||||||||||||||||| 
seq2  TCCAGGAAACTACCA-CTTAA-CTGAACAATAGACAGTATACCCCACAA-  186

seq1  TCTCTTTTTCATTGTAGCAACAAATCTGCATAGCTCAACTCCTTTTCCCT  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTC-TTTTCATTGTAGCAACAAATCTGCATAGCTCAACTCCTTTTCCCT  235

seq1  ACTAGAAAAACACATGTGATTCCACCCATATATTTCAGAGCATGCATTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAAAACACATGTGATTCCACCCATATATTTCAGAGCATGCATTTC  285

seq1  TAACCAAACTCATAACTATACCTGAGAAGTCATTTTGACATGTCAATTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAACTCATAACTATACCTGAGAAGTCATTTTGACATGTCAATTTC  335

seq1  AATTTTTAGATCCTAGACTTGAAGAGTTATGGAAAGGTTCAGTGCCTTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAGATCCTAGACTTGAAGAGTTATGGAAAGGTTCAGTGCCTTAT  385

seq1  TTAGGGTTTTACTGATGTGAACAGACAACATGACCAAGGCAAGTCGTACG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTTTTACTGATGTGAACAGACAACATGACCAAGGCAAGTCGTACG  435

seq1  AAAACAACATTTAATTGGGGCTGTCTTACAGGTTCAGAGGTTCAGTCCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACATTTAATTGGGGCTGTCTTACAGGTTCAGAGGTTCAGTCCAT  485

seq1  TATCATCAAGGTGGAAGCTTGGCAGTATCCAGGCAGGCATGGCACAGGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCAAGGTGGAAGCTTGGCAGTATCCAGGCAGGCATGGCACAGGCA  535

seq1  GAGCTGAGAGTCCTACAACTTCATCCAAAGGCTGCTAGTGGAAGACTGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAGAGTCCTACAACTTCATCCAAAGGCTGCTAGTGGAAGACTGAC  585

seq1  TTCCAGGCAACTAGTATGAGGATCTTAAGCCCACACCCACAGTGACACAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCAACTAGTATGAGGATCTTAAGCCCACACCCACAGTGACACAC  635

seq1  CTACTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTCCAAATGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTCCAAATGG  685

seq1  TGCCACTCCCTGGTCCAAGAATATACAAACAATCACATTCAGTGAGGTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTCCCTGGTCCAAGAATATACAAACAATCACATTCAGTGAGGTCC  735

seq1  ATTATTTCCAAATCATTAGCTTTTATCCTCTCCTTAAAACATGAAATTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCCAAATCATTAGCTTTTATCCTCTCCTTAAAACATGAAATTTT  785

seq1  TGAAGTCTGAAAAAATTCAGAAGGCCTATTTATTTATAAACAGATTAGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTGAAAAAATTCAGAAGGCCTATTTATTTATAAACAGATTAGGG  835

seq1  AGACACACAAATCTCAGCATGTACAGGTATGTATTCAATGTGTGGGAGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACAAATCTCAGCATGTACAGGTATGTATTCAATGTGTGGGAGAT  885

seq1  AGTGTCTATTAAGAAATTGTTGAATGTTTTTTGAAGGTTACGATGTTCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTATTAAGAAATTGTTGAATGTTTTTTGAAGGTTACGATGTTCAA  935

seq1  TTTTCTATCATCAATTCAGTTTCCTGGGAAAATATAAATGAAAACAAAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATCATCAATTCAGTTTCCTGGGAAAATATAAATGAAAACAAAGT  985

seq1  CATTTAGTTCTTAGTTCAATCTAAGTCCTATTGATAAAGGAAAGTTGAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTTCTTAGTTCAATCTAAGTCCTATTGATAAAGGAAAGTTGAAT  1035

seq1  GTTTCTGGAATAACCTTTGTATTTGCACATATCATTAAAGGAGGTGTGAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGAATAACCTTTGTATTTGCACATATCATTAAAGGAGGTGTGAT  1085

seq1  AAGAATTC  1106
      ||||||||
seq2  AAGAATTC  1093

seq1: chr6_67884029_67885154
seq2: B6Ng01-057P10.g_68_1169

seq1  GAATTCATTCAATTCCATTCCACAGTCTCCCTATGCTGCTCATTCTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAATTCCATTCCACAGTCTCCCTATGCTGCTCATTCTGCTT  50

seq1  TATTTTGCTTTCTTTTCATTCATAATATTCATTAGAAATTAAAAATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCTTTCTTTTCATTCATAATATTCATTAGAAATTAAAAATATAA  100

seq1  GTCATCTATTCTCCTCTTCCCTTTAACTCTGAAACACTTATTCTCACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTATTCTCCTCTTCCCTTTAACTCTGAAACACTTATTCTCACCAA  150

seq1  TTTCATTTCAACTACAATTTTTAGTTGACTCAGTGATTGAATTTTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCAACTACAATTTTTAGTTGACTCAGTGATTGAATTTTCTTTC  200

seq1  CTTGCATGGGTATGAATTGGGGCTAATTTACTAGAACATAACAGTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATGGGTATGAATTGGGGCTAATTTACTAGAACATAACAGTTTTTC  250

seq1  AATGGCTACACCACTGAGGAAAATGTCACAGCCTTTCCTAGCAGCTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTACACCACTGAGGAAAATGTCACAGCCTTTCCTAGCAGCTATTA  300

seq1  ACTGCTAATAGGCTGTTACTAAAGAGTAGGAACTCATTAGACCATTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAATAGGCTGTTACTAAAGAGTAGGAACTCATTAGACCATTCTTT  350

seq1  TTCATGATAAAATAATGTTGTATCTAATTTTGAGAAGGTAAGCATAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATAAAATAATGTTGTATCTAATTTTGAGAAGGTAAGCATAGTAT  400

seq1  CGTGCTTATGAGTACAGGGACTGTCTTAGTCAGGGTTTCTATTCCTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTTATGAGTACAGGGACTGTCTTAGTCAGGGTTTCTATTCCTGCAC  450

seq1  AAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTTGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTTGGCTT  500

seq1  ACACTTCCATACTGCTGTTCATCACCAAAGGAAGTTAGGACTGGAACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCATACTGCTGTTCATCACCAAAGGAAGTTAGGACTGGAACTCA  550

seq1  AGCAGGTCAGAAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTCAGAAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCCT  600

seq1  TACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTTTTATAGAACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTTTTATAGAACCCA  650

seq1  AGTGTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTG  700

seq1  ATCACTAATTGAGGAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAATTGAGGAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCC  750

seq1  TCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCGAGTTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCGAGTTGACA  800

seq1  CAAAACTAGCCAGTACAGGGACCATGTCTAGAATCCCCTTTTTCCCAGGT  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAAACTAGCCAGTACAGGGACCATGTCTAGAATCCCC-TTTTCCCAGGT  849

seq1  TTTCTTGTTATTCTTTGGTTCTTACATTTCCACTACATGCTATTTGAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTATTCTTTGGTTCTTACATTTCCACTACATGCTATTTGAGAT  899

seq1  GTTCTTTAGCCTGAAAAAATGATGTTCATTTTTTTTCTGTTGAGGATTAA  950
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  GTTCTTTAGCCTG-AAAAATGATGTTCA-TTTTTTTCTGTTGAGGATTAA  947

seq1  GTGTGACCACTCTAGTTATTCTAAGCAAATAGAGCTTTTTATTAGGACAA  1000
      |||||| ||||||||||| ||| ||||||||||||||||||||| |||||
seq2  GTGTGA-CACTCTAGTTA-TCT-AGCAAATAGAGCTTTTTATTA-GACAA  993

seq1  ATTAAGACCACTGTTACATCAGTTATATAAAATGACATAAGCATAACCTA  1050
      ||||||| ||||| ||||||||||| || ||||||| | ||||||  |||
seq2  ATTAAGA-CACTG-TACATCAGTTA-AT-AAATGAC-TTAGCATA--CTA  1036

seq1  TGATACACAGAAAGGTAAATACTAAGTGTAAATTAAGAATAAATTATTAT  1100
      |||||| ||| |  |||||||||| || |||  |||||||||  ||||||
seq2  TGATAC-CAGGA--GTAAATACTAGGT-TAA--TAAGAATAA--TATTAT  1078

seq1  TTTATCTGTATGGGTATTCAACATGC  1126
      ||  ||||||||||||||  ||||||
seq2  TTATTCTGTATGGGTATT--ACATGC  1102