BAC Information

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BAC

Clone NameB6Ng01-058A12
Chromosome6 (Build37)
Map Location 70,596,878 - 70,727,478
singlet/doubletdoublet
Overlap geneIgk, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia
Upstream geneGm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6
Downstream geneEif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058A12.bB6Ng01-058A12.g
ACCDH879723DH879724
length959186
definitionDH879723|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A12, 5' end.DH879724|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,596,878 - 70,597,546)(70,727,293 - 70,727,478)
sequence
gaattctctgcatctcaaccccttcccacaagttaacaacagcactgtta
atttcttaagctttgagctcttgctactgagataccatgatcatgaaaga
acttctcataattctgagaactgaggggaaagaggtaaacctctttctat
attatcaaactagatattcaaatttttttttattaggtattttcctcatt
tacatttccaatgctatcccacaaatcccccataccccccccccactccc
ctacccacccactcccactttttggccctggcattcccctgtactggggc
atataaagtttgcaagtccaatgggcctctctttccagtgaaggccgact
aggccatcttttgatatatatgcagctagagtcaagagctccggggtact
gatgagttcataatgttgttccacctatagggatgcagatccctttagct
ccttgggtattttctctagctcctctattgggggccctgtgatccatcca
atagctgagtgtgagcatccacatatgtgtttcctagtccccggtgtagt
ctcactagagacagctatatcaggattctatcagcaaaatcttgctagtt
tatgcaaaggtgtcagcttttggagcctgaatatgggatggatccctgaa
tatggcagtctctagatggtccgatcttttgtatcagctccaaactatgt
ctctgtaactccttccatgggtgttttgttcccaattctaagaaggggca
aagtgtccacacgttggtcttcgttcttcttgagtttcatgtgttttgca
aattgtaacttatatcttgggtattctaagtttctaggctaatatccact
tatcagtgagtacatatcatttgagttctttgtgattgggttacttcact
cagataatgccctccaggtccaccatttgcctaggatttaataaattcat
cttttatag
tgtaaattctgcagacttttgctatatttttagtataaatgacccgtgct
tgctttttttctgtcctccctaggccaggcagcttatcttgcagtatggc
ttaaccctcagtgacctggatcaacacccagaggtgagtgtgtgtgtgta
tgagagagagagagagagagagagagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_70596878_70597546
seq2: B6Ng01-058A12.b_32_700

seq1  GAATTCTCTGCATCTCAACCCCTTCCCACAAGTTAACAACAGCACTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCATCTCAACCCCTTCCCACAAGTTAACAACAGCACTGTTA  50

seq1  ATTTCTTAAGCTTTGAGCTCTTGCTACTGAGATACCATGATCATGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAAGCTTTGAGCTCTTGCTACTGAGATACCATGATCATGAAAGA  100

seq1  ACTTCTCATAATTCTGAGAACTGAGGGGAAAGAGGTAAACCTCTTTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCATAATTCTGAGAACTGAGGGGAAAGAGGTAAACCTCTTTCTAT  150

seq1  ATTATCAAACTAGATATTCAAATTTTTTTTTATTAGGTATTTTCCTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAAACTAGATATTCAAATTTTTTTTTATTAGGTATTTTCCTCATT  200

seq1  TACATTTCCAATGCTATCCCACAAATCCCCCATACCCCCCCCCCACTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCCAATGCTATCCCACAAATCCCCCATACCCCCCCCCCACTCCC  250

seq1  CTACCCACCCACTCCCACTTTTTGGCCCTGGCATTCCCCTGTACTGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACCCACTCCCACTTTTTGGCCCTGGCATTCCCCTGTACTGGGGC  300

seq1  ATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGAAGGCCGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGAAGGCCGACT  350

seq1  AGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACT  400

seq1  GATGAGTTCATAATGTTGTTCCACCTATAGGGATGCAGATCCCTTTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTTCATAATGTTGTTCCACCTATAGGGATGCAGATCCCTTTAGCT  450

seq1  CCTTGGGTATTTTCTCTAGCTCCTCTATTGGGGGCCCTGTGATCCATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGTATTTTCTCTAGCTCCTCTATTGGGGGCCCTGTGATCCATCCA  500

seq1  ATAGCTGAGTGTGAGCATCCACATATGTGTTTCCTAGTCCCCGGTGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGAGTGTGAGCATCCACATATGTGTTTCCTAGTCCCCGGTGTAGT  550

seq1  CTCACTAGAGACAGCTATATCAGGATTCTATCAGCAAAATCTTGCTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAGAGACAGCTATATCAGGATTCTATCAGCAAAATCTTGCTAGTT  600

seq1  TATGCAAAGGTGTCAGCTTTTGGAGCCTGAATATGGGATGGATCCCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAGGTGTCAGCTTTTGGAGCCTGAATATGGGATGGATCCCTGAA  650

seq1  TATGGCAGTCTCTAGATGG  669
      |||||||||||||||||||
seq2  TATGGCAGTCTCTAGATGG  669

seq1: chr6_70727293_70727478
seq2: B6Ng01-058A12.g_74_259 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACACACACACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACACACACACACT  50

seq1  CACCTCTGGGTGTTGATCCAGGTCACTGAGGGTTAAGCCATACTGCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGGGTGTTGATCCAGGTCACTGAGGGTTAAGCCATACTGCAAGA  100

seq1  TAAGCTGCCTGGCCTAGGGAGGACAGAAAAAAAGCAAGCACGGGTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGCCTGGCCTAGGGAGGACAGAAAAAAAGCAAGCACGGGTCATTT  150

seq1  ATACTAAAAATATAGCAAAAGTCTGCAGAATTTACA  186
      ||||||||||||||||||||||||||||||||||||
seq2  ATACTAAAAATATAGCAAAAGTCTGCAGAATTTACA  186