BAC Information

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BAC

Clone NameB6Ng01-058I04
Chromosome6 (Build37)16 (Build37)
Map Location 28,727,283 - 28,728,40860,776,074 - 60,776,639
singlet/doubletsingletsinglet
Overlap geneSnd1
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350
Downstream geneLrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058I04.bB6Ng01-058I04.g
ACCDH880067DH880068
length1,109744
definitionDH880067|Mus musculus domesticus DNA, BAC clone: B6Ng01-058I04, 5' end.DH880068|Mus musculus domesticus DNA, BAC clone: B6Ng01-058I04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,727,283 - 28,728,408)(60,776,074 - 60,776,639)
sequence
gaattcttaagagacagttattttattctagctttcttattcatgttgga
taatggaactaggagcaaacagagcgtcctatatagtacctgcttcctcc
tacagggcaggtctctgtgcgagtgagtgctcaggagaacacaaagcagg
ttagctgtccagctacacacgagaaagcttgaggaatgctatcctaccat
gatcttctgaatccttgggtctcatgcatgtggaggatgatcaatttgct
taagcctttactgtgttccaactgcggcctttacaatgtagccagctcaa
gctgccatgaccacagcatatgagctcaggggaagcaggaaaccagagga
acatggcagaggtttgtggatgttagtaatgtatccaataacagaagaca
gtctggcattttgggatgaaaggcaaacctaagaaagtctcaagagtctc
cctctaagaactattgaagtggcctttggggttggagcaatgtggaaggt
gtccggtgaaatgcttgacgcttggcaccttagctgctctcaaatgccat
aaaaacatttgtagtaccaataaatcactctcaatttctactctgctccc
tttgggaaagcacaagagtatgtctgttattctcttacttctaaggttta
gaaaggccctgttcccagaacaaacaaacaaacaaacaaacaaacatctg
catgttcttcccaatatattttgttatgatttcagataaacaaaagatta
cttcaaatctttataacatatttaaacacagattttcatgttatcaatca
gatttagttttaattaaaattgtgagttatctcagaaccattatcacagc
atgtctaatcatcaaagcttctgaaaggaaattcaaaggaaactaagggt
taaaggggctatcttggcctggagagacagctcaatggctgttctttaga
gacccaggctcagttccagcactttcatggcactcaaaacactctagctc
caggggttctaacacttccccttgcccccggactacatgtagtagacacc
ataatttaagataaaaaaaaaaaaaaactttaagtgggtattttatatca
gtcacatct
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggggactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagcctttttgtagaaggatctgatggtgttttggat
ttcttcaggatctgtttgttatgtctcccttttcattttctgattttgta
attaggattttgtccctgtgccctttagtgagtctagctaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_28727283_28728408
seq2: B6Ng01-058I04.b_48_1156 (reverse)

seq1  AGATGTGACTGATTATAAAATAACCCACTTTAAAGTTTTTTTTTTTTTTT  50
      |||||||||||| |||||||| |||||| |||||||||||||||||||||
seq2  AGATGTGACTGA-TATAAAAT-ACCCAC-TTAAAGTTTTTTTTTTTTTTT  47

seq1  TTTAATCTTATATGTATTGGTGTCTTACCTACATGTAAGTCCGGGGGCAA  100
          |||||| || || ||||||||   |||||||| |||||||||||||
seq2  ----ATCTTAAAT-TA-TGGTGTCT--ACTACATGT-AGTCCGGGGGCAA  88

seq1  GGGGAAGGTGTTAGAACCCCTGGAGCTAGAGTGTTTTTGAGTGCCATGAA  150
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGGAA-GTGTTAGAACCCCTGGAGCTAGAGTG-TTTTGAGTGCCATGAA  136

seq1  AGTGCTGGAACTGAGCCTGGGTCCTCTGAAAGAACAGCCATTGAGCTGTC  200
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  AGTGCTGGAACTGAGCCTGGGT-CTCT-AAAGAACAGCCATTGAGCTGTC  184

seq1  TCTCCAGGCCAAGATAGCCCCCTTTAACCCTTAGTTTCCTTTGAATTTCC  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTCCAGGCCAAGATAG-CCCCTTTAACCCTTAGTTTCCTTTGAATTTCC  233

seq1  TTTCAGAAGCTTTGATGATTAGACATGCTGTGATAATGGTTCTGAGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAGCTTTGATGATTAGACATGCTGTGATAATGGTTCTGAGATAA  283

seq1  CTCACAATTTTAATTAAAACTAAATCTGATTGATAACATGAAAATCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAATTTTAATTAAAACTAAATCTGATTGATAACATGAAAATCTGTG  333

seq1  TTTAAATATGTTATAAAGATTTGAAGTAATCTTTTGTTTATCTGAAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATGTTATAAAGATTTGAAGTAATCTTTTGTTTATCTGAAATCA  383

seq1  TAACAAAATATATTGGGAAGAACATGCAGATGTTTGTTTGTTTGTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAATATATTGGGAAGAACATGCAGATGTTTGTTTGTTTGTTTGTT  433

seq1  TGTTTGTTCTGGGAACAGGGCCTTTCTAAACCTTAGAAGTAAGAGAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTCTGGGAACAGGGCCTTTCTAAACCTTAGAAGTAAGAGAATAA  483

seq1  CAGACATACTCTTGTGCTTTCCCAAAGGGAGCAGAGTAGAAATTGAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATACTCTTGTGCTTTCCCAAAGGGAGCAGAGTAGAAATTGAGAGT  533

seq1  GATTTATTGGTACTACAAATGTTTTTATGGCATTTGAGAGCAGCTAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTGGTACTACAAATGTTTTTATGGCATTTGAGAGCAGCTAAGGT  583

seq1  GCCAAGCGTCAAGCATTTCACCGGACACCTTCCACATTGCTCCAACCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCGTCAAGCATTTCACCGGACACCTTCCACATTGCTCCAACCCCA  633

seq1  AAGGCCACTTCAATAGTTCTTAGAGGGAGACTCTTGAGACTTTCTTAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCACTTCAATAGTTCTTAGAGGGAGACTCTTGAGACTTTCTTAGGT  683

seq1  TTGCCTTTCATCCCAAAATGCCAGACTGTCTTCTGTTATTGGATACATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTCATCCCAAAATGCCAGACTGTCTTCTGTTATTGGATACATTA  733

seq1  CTAACATCCACAAACCTCTGCCATGTTCCTCTGGTTTCCTGCTTCCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATCCACAAACCTCTGCCATGTTCCTCTGGTTTCCTGCTTCCCCTG  783

seq1  AGCTCATATGCTGTGGTCATGGCAGCTTGAGCTGGCTACATTGTAAAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATATGCTGTGGTCATGGCAGCTTGAGCTGGCTACATTGTAAAGGC  833

seq1  CGCAGTTGGAACACAGTAAAGGCTTAAGCAAATTGATCATCCTCCACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTTGGAACACAGTAAAGGCTTAAGCAAATTGATCATCCTCCACATG  883

seq1  CATGAGACCCAAGGATTCAGAAGATCATGGTAGGATAGCATTCCTCAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGACCCAAGGATTCAGAAGATCATGGTAGGATAGCATTCCTCAAGC  933

seq1  TTTCTCGTGTGTAGCTGGACAGCTAACCTGCTTTGTGTTCTCCTGAGCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCGTGTGTAGCTGGACAGCTAACCTGCTTTGTGTTCTCCTGAGCAC  983

seq1  TCACTCGCACAGAGACCTGCCCTGTAGGAGGAAGCAGGTACTATATAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCGCACAGAGACCTGCCCTGTAGGAGGAAGCAGGTACTATATAGGA  1033

seq1  CGCTCTGTTTGCTCCTAGTTCCATTATCCAACATGAATAAGAAAGCTAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTGTTTGCTCCTAGTTCCATTATCCAACATGAATAAGAAAGCTAGA  1083

seq1  ATAAAATAACTGTCTCTTAAGAATTC  1126
      ||||||||||||||||||||||||||
seq2  ATAAAATAACTGTCTCTTAAGAATTC  1109

seq1: chr16_60776074_60776639
seq2: B6Ng01-058I04.g_245_812 (reverse)

seq1  CCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAA  50
      || |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATT-ACAA  49

seq1  AATCAG-AAATGAAAAGGGAGACATAAC-AACAGATCCTGAAGAAATCCA  98
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  AATCAGAAAATGAAAAGGGAGACATAACAAACAGATCCTGAAGAAATCCA  99

seq1  AAACACCATCAGATCCTTCTAC-AAAAGGCTATACTCAACAAAACTGGAA  147
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAACACCATCAGATCCTTCTACAAAAAGGCTATACTCAACAAAACTGGAA  149

seq1  AACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTT  199

seq1  GAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAA  249

seq1  TAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGAT  297
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGAAGCAGTTATTAATAGTCCCCCAACCAAAAAAAGCCCAGGACCAGAT  299

seq1  GGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAAT  349

seq1  TCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACT  399

seq1  CATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCA  449

seq1  ACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAA  499

seq1  AATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAA  549

seq1  TCATCCATCCTGACCAAGT  566
      |||||||||||||||||||
seq2  TCATCCATCCTGACCAAGT  568