BAC Information

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BAC

Clone NameB6Ng01-059A09
Chromosome6 (Build37)
Map Location 95,640,505 - 95,768,665
singlet/doubletdoublet
Overlap geneSuclg2
Upstream geneLrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
Downstream geneLOC665886, LOC545867, C630007B19Rik, LOC100043685, 1700123L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059A09.bB6Ng01-059A09.g
ACCDH880440DH880441
length1,251990
definitionDH880440|Mus musculus domesticus DNA, BAC clone: B6Ng01-059A09, 5' end.DH880441|Mus musculus domesticus DNA, BAC clone: B6Ng01-059A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,640,505 - 95,641,791)(95,768,126 - 95,768,665)
sequence
gaattcatcaaaatgaatgagcaaagtcctcaatttaatttcctttttaa
gaaattctacacaggcaggaaagactggccaacagacaagcctgaagttt
gttctgaggttcatggctcctgcagcttcagaggctcagaaacatctgtg
ggaataatagaggggtcttcaaaggcagacgctctttagccaaaggcaga
aagataaaaatgtaaagtgatgacacacaggcaacaggcatgtgacatac
ccaagacaaacaacatcacaggtgatgacacacaggcaacaggcatgtga
catacccaagacaaacaacatcacaggtgatgacacacaggcaacaggca
tgtgacatacccaagacaaacaacatccggatcggagatggcaaacgtct
gccaattctcaccgaatgcgaatggtggctcacggtgcttcatcaagtaa
gaccatgaggctctgtctagacccatcagaataaactcatgattgattac
tgatgtttgccacaggaagacataaaatcgtaaatattcacatgctagaa
gcaaaataaagttatgtgacttgggagaatgagacgagacaggctcgtca
acatcatcattattaatattactgagtatcttcaatatacccagaagacg
ttagagtaattcaaatttaagtgaaattaaaaagggatatcagacaggct
aaaataaaaaagtgccttgaatcttaataagcccacagtacatgaactgc
ctctaattagattcaggaatatgactccgtgtgaaactaaccaagagaaa
acacttattcagatgatttcaataaaaaaattgataagcacttgcttcca
ctttatcatgcacagaactcaaccgtggattttaaaaatgaaagtacaat
ctatattggagaattatacctgcgagtccttcaaagctagacgttttaat
caataaggggaagggcaacttactgacttacataatgacaaaacacttac
tacttgaaatgactggcggctgtactgaattcagtaacgtttcataccac
cgccgccccatactaatcacaaggagagctagcaagtctgctgctgcacc
tgctctcagctaacacgcttctcttactgatgtgggctgccactgtctcc
cagctactaaggctttcctatcgtatgtgggcaggatcgaacttacttgc
cgtatctctctttcaagaaagaattgccaaggtacactagtttagaagga
g
gaattcctcagagtgggagtgcaaggaggcaaaggccttgttgtgaaagt
ttgagtaggtatgggcaccataactcatgtgtttgcatgtttggctataa
gaagtagcactatttggaggtctagtcttatcggagtaggcatgtccttg
gtggaggaagtgtatcactgtagacctgtgatgtgaggtcttatatattc
aagctagacacagtgtggtacacaatctcctgctgctgcctgtggatcaa
gatgtataactctcagctccttctccaggaccatgtctgactggaaactg
ccatgcttcctaccgtatgatgataatggacaaacctctgaaactgtaag
ccagccccaattaaatgctttcctttataagagttgctgtgatcatgttt
gtctctccaaaacaatagaaactctaagacactgggtatccaaactgagt
attttggctaagcaacatatttaaggtactataagctacaaattttaggt
actatagccctaagctcaaattcatgctaaaagtgtaccggcaagccgat
atattacaccctcaaattgacacacatctaaaatgtataaagaactcttt
aaaatatatgagagaaaaaaggagagctggcccagtaggaaaataaacaa
aagacttggatgcttcactaaacagagtattgaaatggtcaatcaacatg
attaaaattttaactgtatgagacagttgggagatgtaaattcaaaccac
aatacaatgtcatatctcttctctctgaataattatgatgaaaaaatgga
aaatatctagtactttttagataagaaggtaaaataggattcttttcagt
cttaaattttgacttagtatcttaaacatgctaagcaaatggtgtactga
gcatagtcatgtcactcctggatgtcaacagtgctgaagagcatcctatc
acagtaactctttgggagtatccaatcaactcaactgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_95640505_95641791
seq2: B6Ng01-059A09.b_45_1295

seq1  GAATTCATCAAAATGAATGAGCAAAGTCCTCAATTTAATTTCCTTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAAATGAATGAGCAAAGTCCTCAATTTAATTTCCTTTTTAA  50

seq1  GAAATTCTACACAGGCAGGAAAGACTGGCCAACAGACAAGCCTGAAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTACACAGGCAGGAAAGACTGGCCAACAGACAAGCCTGAAGTTT  100

seq1  GTTCTGAGGTTCATGGCTCCTGCAGCTTCAGAGGCTCAGAAACATCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGGTTCATGGCTCCTGCAGCTTCAGAGGCTCAGAAACATCTGTG  150

seq1  GGAATAATAGAGGGGTCTTCAAAGGCAGACGCTCTTTAGCCAAAGGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAATAGAGGGGTCTTCAAAGGCAGACGCTCTTTAGCCAAAGGCAGA  200

seq1  AAGATAAAAATGTAAAGTGATGACACACAGGCAACAGGCATGTGACATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAAATGTAAAGTGATGACACACAGGCAACAGGCATGTGACATAC  250

seq1  CCAAGACAAACAACATCACAGGTGATGACACACAGGCAACAGGCATGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAAACAACATCACAGGTGATGACACACAGGCAACAGGCATGTGA  300

seq1  CATACCCAAGACAAACAACATCACAGGTGATGACACACAGGCAACAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCAAGACAAACAACATCACAGGTGATGACACACAGGCAACAGGCA  350

seq1  TGTGACATACCCAAGACAAACAACATCCGGATCGGAGATGGCAAACGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATACCCAAGACAAACAACATCCGGATCGGAGATGGCAAACGTCT  400

seq1  GCCAATTCTCACCGAATGCGAATGGTGGCTCACGGTGCTTCATCAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTCTCACCGAATGCGAATGGTGGCTCACGGTGCTTCATCAAGTAA  450

seq1  GACCATGAGGCTCTGTCTAGACCCATCAGAATAAACTCATGATTGATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGAGGCTCTGTCTAGACCCATCAGAATAAACTCATGATTGATTAC  500

seq1  TGATGTTTGCCACAGGAAGACATAAAATCGTAAATATTCACATGCTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTGCCACAGGAAGACATAAAATCGTAAATATTCACATGCTAGAA  550

seq1  GCAAAATAAAGTTATGTGACTTGGGAGAATGAGACGAGACAGGCTCGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATAAAGTTATGTGACTTGGGAGAATGAGACGAGACAGGCTCGTCA  600

seq1  ACATCATCATTATTAATATTACTGAGTATCTTCAATATACCCAGAAGACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATCATTATTAATATTACTGAGTATCTTCAATATACCCAGAAGACG  650

seq1  TTAGAGTAATTCAAATTTAAGTGAAATTAAAAAGGGATATCAGACAGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTAATTCAAATTTAAGTGAAATTAAAAAGGGATATCAGACAGGCT  700

seq1  AAAATAAAAAAGTGCCTTGAATCTTAATAAGCCCACAGTACATGAACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAAGTGCCTTGAATCTTAATAAGCCCACAGTACATGAACTGC  750

seq1  CTCTAATTAGATTCAGGAATATGACTCCGTGTGAAACTAACCAAGAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATTAGATTCAGGAATATGACTCCGTGTGAAACTAACCAAGAGAAA  800

seq1  ACACTTATTCAGATGATTTCAATAAAAAAATTGATAAGCACTTGCTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATTCAGATGATTTCAATAAAAAAATTGATAAGCACTTGCTTCCA  850

seq1  CTTTATCATGCACAGAACTCAACCGTGGATTTTAAAAAATGAAAGTACAA  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTTATCATGCACAGAACTCAACCGTGGATTTT-AAAAATGAAAGTACAA  899

seq1  TCTATATTGGAGAAATTATACCTGCGAGTCCTTCAAAAGCTAAGACGTTT  950
      |||||||||||| ||||||||||||||||||||| |||||| ||||||||
seq2  TCTATATTGGAG-AATTATACCTGCGAGTCCTTC-AAAGCT-AGACGTTT  946

seq1  TAATCAATAAGGTGGAAGGGCAACTTACTGACTTACATAAATGAACAAAA  1000
      |||||||||||| ||||||||||||||||||||||||| |||| ||||||
seq2  TAATCAATAAGG-GGAAGGGCAACTTACTGACTTACAT-AATG-ACAAAA  993

seq1  CACTTACTACTTGAAATGACTGGCGGCTGTACTGAATTCAGTAACGGTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  CACTTACTACTTGAAATGACTGGCGGCTGTACTGAATTCAGTAACG--TT  1041

seq1  CCATACCACCGCCCGCCCCATACTAAATCAACAAAGAGAAGCTAGCAAGT  1100
       |||||||||| |||||||||||| |||| |||| ||| |||||||||||
seq2  TCATACCACCG-CCGCCCCATACT-AATC-ACAAGGAG-AGCTAGCAAGT  1087

seq1  CTGCCTGCTGCCCACCTGCTCCTCAGCTAACCAACGCTTTCTCTACCTGA  1150
      ||| ||||||  |||||||| ||||||||||  |||| ||||||  ||||
seq2  CTG-CTGCTG--CACCTGCT-CTCAGCTAAC--ACGC-TTCTCTTACTGA  1130

seq1  TGTGGGCTGCCCACCTGCTCCTCAGCTAACTAAGGCTTTCTCTACCTGAT  1200
      ||||||||| ||||   |||| ||||| |||||||||||| ||| |  ||
seq2  TGTGGGCTG-CCACTGTCTCC-CAGCT-ACTAAGGCTTTC-CTATCGTAT  1176

seq1  GTGGGCAGGGGATTCAGAACTTACCTCGCCTAACTCTTCTTTGTCAAAGA  1250
      |||||||  ||||   |||||||| |  | || ||| |||||    ||||
seq2  GTGGGCA--GGAT--CGAACTTACTTGCCGTATCTC-TCTTT---CAAGA  1218

seq1  AAGGAGATTTGCCCAGGTAAACTCAGTTTAGAAGGAG  1287
      |   ||| ||||| ||||| ||| |||||||||||||
seq2  A---AGAATTGCCAAGGTACACT-AGTTTAGAAGGAG  1251

seq1: chr6_95768126_95768665
seq2: B6Ng01-059A09.g_68_607 (reverse)

seq1  CGGTACACTTTTAGCATGAATTTGAGCTTAGGGCTATAGTACCTAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTACACTTTTAGCATGAATTTGAGCTTAGGGCTATAGTACCTAAAATT  50

seq1  TGTAGCTTATAGTACCTTAAATATGTTGCTTAGCCAAAATACTCAGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTTATAGTACCTTAAATATGTTGCTTAGCCAAAATACTCAGTTTG  100

seq1  GATACCCAGTGTCTTAGAGTTTCTATTGTTTTGGAGAGACAAACATGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCAGTGTCTTAGAGTTTCTATTGTTTTGGAGAGACAAACATGATC  150

seq1  ACAGCAACTCTTATAAAGGAAAGCATTTAATTGGGGCTGGCTTACAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACTCTTATAAAGGAAAGCATTTAATTGGGGCTGGCTTACAGTTT  200

seq1  CAGAGGTTTGTCCATTATCATCATACGGTAGGAAGCATGGCAGTTTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTTGTCCATTATCATCATACGGTAGGAAGCATGGCAGTTTCCAG  250

seq1  TCAGACATGGTCCTGGAGAAGGAGCTGAGAGTTATACATCTTGATCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATGGTCCTGGAGAAGGAGCTGAGAGTTATACATCTTGATCCACA  300

seq1  GGCAGCAGCAGGAGATTGTGTACCACACTGTGTCTAGCTTGAATATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGCAGGAGATTGTGTACCACACTGTGTCTAGCTTGAATATATAA  350

seq1  GACCTCACATCACAGGTCTACAGTGATACACTTCCTCCACCAAGGACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCACATCACAGGTCTACAGTGATACACTTCCTCCACCAAGGACATG  400

seq1  CCTACTCCGATAAGACTAGACCTCCAAATAGTGCTACTTCTTATAGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCCGATAAGACTAGACCTCCAAATAGTGCTACTTCTTATAGCCAA  450

seq1  ACATGCAAACACATGAGTTATGGTGCCCATACCTACTCAAACTTTCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAAACACATGAGTTATGGTGCCCATACCTACTCAAACTTTCACAA  500

seq1  CAAGGCCTTTGCCTCCTTGCACTCCCACTCTGAGGAATTC  540
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCTTTGCCTCCTTGCACTCCCACTCTGAGGAATTC  540