BAC Information

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BAC

Clone NameB6Ng01-059C18
Chromosome6 (Build37)10 (Build37)
Map Location 18,835,427 - 18,835,968104,053,905 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059C18.bB6Ng01-059C18.g
ACCDH880531DH880532
length1,041925
definitionDH880531|Mus musculus domesticus DNA, BAC clone: B6Ng01-059C18, 5' end.DH880532|Mus musculus domesticus DNA, BAC clone: B6Ng01-059C18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,427 - 18,835,968)(104,053,905 - 104,054,363)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ccatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagggtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggatcatttctgggtcttcaattctattcctttgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttgggtctggcatggtgatttcgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctcctaccaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtatattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatattccatcttc
tgagatcttctttaatttctttcttcagagatttgaagttttatcataca
gatctttcacttccttagttagagtcacgccagatatttatattattgtg
actatgagaagggtgtgtttcctaatttctttctcagctgttattctttg
tatagagaaggcatgacttgttgagttattttatatctgct
gaattctcacctgaggaataatgaatggctgagaagcacctgaaaaaatg
ttcaatattcttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacacttctccattgttggtg
ggattgccaacttgtacaacaactctggaagtcagcctggcggttcctca
gaaaattggacatagtactaccggaagatcctgcaatacctcttctacgc
atatatccagaagatgttccaaccggtaagaaggacacatgctctactat
attcatagcagccttatttataatagccagaacctgggaaaatcccagat
gcccctcaacagaggaatggatacagaaaatgtggtacacttacacaatg
gagtattactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggtatcttgctgagtgaggtaacccagtcacaaa
ggaactcacacactatgtactcactgataagtggatattagctcagaaac
ttaggatacccaagacataagatacaatttgctaaacgcatgaaactcaa
gaagaacgaagaccaaagtgtgcacactttgccccttcttagaattggga
acaaaacacccatggaaggagttacagagacaaagtttggagctgtgacg
aaaggatggactatctagagactgccatatccagggatccatcccataat
cagcttccaaacacagacaccattgcataaactagcaagattttgctgaa
ggacccagatatagctctctctgtgagactatgccgggcctagcaacaca
gaagtggatgctcacagtcagctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835427_18835968
seq2: B6Ng01-059C18.b_44_586 (reverse)

seq1  AATAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGAT  50
      |||||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  AATAGAATTGAAGACCCAGAAATGATCCCACACACCTATGGTCACTTGAT  50

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100

seq1  ACAATTGGTGCTGGCACAACTGGTTGTTATCTTGTAGAAGAATGTGAATC  150
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  ACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATC  150

seq1  GATCCATACTTATCTCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200

seq1  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTTCACATAAAACCAGAGACCCTGAAACTTATAGAGGAGAAAGTGGGGA  250

seq1  AAAGCCTTGAAGATATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCA  300
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  AAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCA  300

seq1  ATGGC-TGTGCTGTGAGGTAGAGAATCGACAAATGGGACCTAATGAAACT  349
      ||||| |||||||| || | |||||| |||||||||||||||||||||||
seq2  ATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACT  350

seq1  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  400

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  449
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATGGGGGACTA  450

seq1  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  500

seq1  TAACCCCATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  542
      |||||||||||| ||||||||||||||||||||||||||||||
seq2  TAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  543

seq1: chr10_104053905_104054363
seq2: B6Ng01-059C18.g_66_523 (reverse)

seq1  TAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTG  50
      ||||| ||||||||||||| |||||||||||||||||||| |||||||||
seq2  TAATA-CTCCATTGTGTAAGTGTACCACATTTTCTGTATCCATTCCTCTG  49

seq1  TTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCT  100
      |||||||||||||||| | || |||| | |||||||||||||||||||||
seq2  TTGAGGGGCATCTGGGATTTTCCCAGGTTCTGGCTATTATAAATAAGGCT  99

seq1  GCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTC  150
      |||||||||||||| ||||||||||||||||||||||||||  |||||||
seq2  GCTATGAATATAGTAGAGCATGTGTCCTTCTTACCGGTTGGAACATCTTC  149

seq1  TGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGT  200
      |||||||||||  |||||||||||||| ||||| ||||||||||||||||
seq2  TGGATATATGCGTAGAAGAGGTATTGCAGGATCTTCCGGTAGTACTATGT  199

seq1  CCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGC  250
      |||||||||||| |||||||||| | || ||||||||| |||||||||| 
seq2  CCAATTTTCTGAGGAACCGCCAGGCTGACTTCCAGAGTTGTTGTACAAGT  249

seq1  CTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCG  300
        ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGCAATCCCACCAACAATGGAGAAGTGTTCCTCTTTCTCCACATCCTCG  299

seq1  CCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTG  349

seq1  TGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAG  399

seq1  GATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGG  450
       || ||||||||||||||||||||||||| |||||||  |||||||||||
seq2  AATATTGAACATTTTTTCAGGTGCTTCTCAGCCATTCATTATTCCTCAGG  449

seq1  TGAGAATTC  459
      |||||||||
seq2  TGAGAATTC  458