BAC Information

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BAC

Clone NameB6Ng01-059D18
Chromosome6 (Build37)
Map Location 21,788,749 - 21,898,273
singlet/doubletdoublet
Overlap geneTspan12, LOC100041358
Upstream geneKcnd2, LOC100041343
Downstream geneIng3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022, Ptprz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059D18.bB6Ng01-059D18.g
ACCDH880575DH880576
length1,1021,103
definitionDH880575|Mus musculus domesticus DNA, BAC clone: B6Ng01-059D18, 5' end.DH880576|Mus musculus domesticus DNA, BAC clone: B6Ng01-059D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,788,749 - 21,789,877)(21,897,158 - 21,898,273)
sequence
gaattcagcatccctccatttattcacaaaggtgccccacaggcttcatc
tcccatctccatgactatctgttggtgtttactttctaaatgtcacagtg
agagaatagctcactagtttacattattgaaataaagaacctatcatcgt
tctacttaacaataaatgatcttgctatctccacccttgagtttccttct
tttttctttttaatcattttgagcacttcccaccatgcattttgattgta
tccacccttcctctcacccctccaacttatccttgtgcttcttagctcat
tttctgagtcttcattgtgcataactgattcatagtggttgtcactagac
acagttcttccccttttggcaaaaaaagaaagaggaaaacaagaaaaaaa
ttcatttgttttgaactgtatgtttcaagacacttgttaatggcaggatg
aataaagccttggcttgaagtcattattcctttctaagcatatacattga
tcatggccaggtactgcactatgtaccagagacgggaacgagaagtagct
gacactatctccatgatgcatttctctaagggaagaggacatacattgcc
atcatcagaagtgtgaatgtgcaactgcaggctgtactaagtacaggaga
gaacaactcctttcaggctgtctgactcacaaggtcaaagggacttctct
atggcagctgggatgtgaagagcaaagtcaagttaattaggagggaaagg
atagaaaggattttccagtcagaaggaaaagcaaaggttgcagaggagaa
ggcagcatggcatgttcgggggagggaacggctcctgggaatgcacagct
gggcaaggaaacttgtcttcgaagctgcctaaaggtatgtccttgacagc
gtgcaaacgacagaaagccactgaactctgaacttcactaggaacctcag
ctctgcacctttgcagcttatacgttggtacgacatttggttttactacg
cagtgcttttttcaccttaacatcataaaaaaactctatagaagattctt
atgatgagtaatcaaatatactgttttaccattgtccattttacccgaag
tt
gaattcacttttccagggttataaatatagagaaatttcactgctggagt
taaaatcgagttttgctagagaatattagcatttgactctgcaactttgc
tgcaagacaccatcaaacttagggtcaaattaagttatgtagttgaggtt
tattctattgcaccgatagattgaattggaacctgtaatgaaaatacttc
attatatactctcaagggagactttttcttccttattggcctcttaagtc
caagacaagcatgttttcttagtggcctcttatatgaaaagagtttattg
ctcacctactcttacatagggactattcctcttgggatcctgtcttctat
tagactcctccttgagaactgatttttgacgttgtcttcttacagtggct
ggatgcatagctgttcaagcaggaattctacatggccaagatttgattga
tagtctctgaactaaagctgacttcgttcccagcttacctcaaacgtgct
catttcctttgctcattccttctgtatccattctgagaatttctatatgt
cctagtagaatatcagttcatttgaatccatttgtttatttgagatggga
tcctgggtagcccaagctgacctccaattcactattgtaatccaagctaa
tcttgaacttttaaccttcctgcttgcaccttcaaaatgttgactttgca
ggcttgcaccacctcacccgatttggctccatttgagcttgttaacccag
atttttagaaaattgttttagcagatactgcattaagagtagttaatatg
gcatgctgtcaaaagtagaagttcaccgtgtctatgtaaaccaagtttcc
tcagagagtggttctgtagtgaggaaatgggaattttaagatgatttcaa
catagtcagtgtacacacaccttctagagaagcctagaataagacttaca
tgctgtttcccttactgacccaccctgattgctggactacatacacctgc
agaagctgcattatctatgctattggattttgcaattgatgatgtcggtg
agcacctgcaccaccaacacatatttcttggcaagcttcctatgaataaa
gga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21788749_21789877
seq2: B6Ng01-059D18.b_44_1145

seq1  GAATTCAGCATCCCTCCATTTATTCACAAAGGTGCCCCACAGGCTTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATCCCTCCATTTATTCACAAAGGTGCCCCACAGGCTTCATC  50

seq1  TCCCATCTCCATGACTATCTGTTGGTGTTTACTTTCTAAATGTCACAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCTCCATGACTATCTGTTGGTGTTTACTTTCTAAATGTCACAGTG  100

seq1  AGAGAATAGCTCACTAGTTTACATTATTGAAATAAAGAACCTATCATCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATAGCTCACTAGTTTACATTATTGAAATAAAGAACCTATCATCGT  150

seq1  TCTACTTAACAATAAATGATCTTGCTATCTCCACCCTTGAGTTTCCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTAACAATAAATGATCTTGCTATCTCCACCCTTGAGTTTCCTTCT  200

seq1  TTTTTCTTTTTAATCATTTTGAGCACTTCCCACCATGCATTTTGATTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTTAATCATTTTGAGCACTTCCCACCATGCATTTTGATTGTA  250

seq1  TCCACCCTTCCTCTCACCCCTCCAACTTATCCTTGTGCTTCTTAGCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCTTCCTCTCACCCCTCCAACTTATCCTTGTGCTTCTTAGCTCAT  300

seq1  TTTCTGAGTCTTCATTGTGCATAACTGATTCATAGTGGTTGTCACTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTCTTCATTGTGCATAACTGATTCATAGTGGTTGTCACTAGAC  350

seq1  ACAGTTCTTCCCCTTTTGGCAAAAAAAGAAAGAGGAAAACAAGAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTTCCCCTTTTGGCAAAAAAAGAAAGAGGAAAACAAGAAAAAAA  400

seq1  TTCATTTGTTTTGAACTGTATGTTTCAAGACACTTGTTAATGGCAGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTTTTGAACTGTATGTTTCAAGACACTTGTTAATGGCAGGATG  450

seq1  AATAAAGCCTTGGCTTGAAGTCATTATTCCTTTCTAAGCATATACATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCCTTGGCTTGAAGTCATTATTCCTTTCTAAGCATATACATTGA  500

seq1  TCATGGCCAGGTACTGCACTATGTACCAGAGACGGGAACGAGAAGTAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCAGGTACTGCACTATGTACCAGAGACGGGAACGAGAAGTAGCT  550

seq1  GACACTATCTCCATGATGCATTTCTCTAAGGGAAGAGGACATACATTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTATCTCCATGATGCATTTCTCTAAGGGAAGAGGACATACATTGCC  600

seq1  ATCATCAGAAGTGTGAATGTGCAACTGCAGGCTGTACTAAGTACAGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAGAAGTGTGAATGTGCAACTGCAGGCTGTACTAAGTACAGGAGA  650

seq1  GAACAACTCCTTTCAGGCTGTCTGACTCACAAGGTCAAAGGGACTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACTCCTTTCAGGCTGTCTGACTCACAAGGTCAAAGGGACTTCTCT  700

seq1  ATGGCAGCTGGGATGTGAAGAGCAAAGTCAAGTTAATTAGGAGGGAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCTGGGATGTGAAGAGCAAAGTCAAGTTAATTAGGAGGGAAAGG  750

seq1  ATAGAAAGGATTTTCCAGTCAGAAGGAAAAGCAAAGGTTGCAGAGGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGGATTTTCCAGTCAGAAGGAAAAGCAAAGGTTGCAGAGGAGAA  800

seq1  GGCAGCATGGCATGTTCGGGGGAGGGGAACGGCTCCTGGGAATGCACAGC  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGCAGCATGGCATGTTCGGGGGA-GGGAACGGCTCCTGGGAATGCACAGC  849

seq1  TGGGCAAGGAAACTTGTCTTCGAAGCTGCCTAAAGGTATGTCCTTGACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAGGAAACTTGTCTTCGAAGCTGCCTAAAGGTATGTCCTTGACAG  899

seq1  CGTGCAAACGACAGAAAGCCACTGAACTCTGAACTTCAACTAGGAACCTC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CGTGCAAACGACAGAAAGCCACTGAACTCTGAACTTC-ACTAGGAACCTC  948

seq1  AGCTCTGCACCTTTGCAGCTTATAACGTTTGGTACGACATTTGGTTTTTA  1000
      ||||||||||||||||||||||| ||| |||||||||||||||| |||||
seq2  AGCTCTGCACCTTTGCAGCTTAT-ACG-TTGGTACGACATTTGG-TTTTA  995

seq1  CTTAACCGCAGTTGCTTTTTTTTCACCTTTAAACCATCATAAAAAAAAAC  1050
      ||    ||||| |||  ||||||||||||   | ||||||  ||||||||
seq2  CT---ACGCAG-TGC--TTTTTTCACCTT---AACATCAT--AAAAAAAC  1034

seq1  TCTATAGAAGATTCTTATGATGAAGTAAATCCAAATATATTACCTGTTAT  1100
      |||||||||||||||||||||| |||||   ||||||||    ||||| |
seq2  TCTATAGAAGATTCTTATGATG-AGTAA--TCAAATATA----CTGTT-T  1076

seq1  TACCATGTGTCACATTTAACCCGAGAGTT  1129
      |||||| |||| ||||| |||||| ||||
seq2  TACCAT-TGTC-CATTTTACCCGA-AGTT  1102

seq1: chr6_21897158_21898273
seq2: B6Ng01-059D18.g_69_1171 (reverse)

seq1  TCCTTTATATCATAGGAAGCACTGCCAAGAAATATGGTGTTGGTTGTGTG  50
      |||||||| |||||||||||  ||||||||||||| ||||||||   |||
seq2  TCCTTTAT-TCATAGGAAGC-TTGCCAAGAAATAT-GTGTTGGT--GGTG  45

seq1  CAGGTGGCATCACCGACAATCATCAATTGCATAATTCAATAGCATAGATA  100
      ||||||   |||||||| ||||||||||||| ||| ||||||||||||||
seq2  CAGGTG--CTCACCGAC-ATCATCAATTGCAAAATCCAATAGCATAGATA  92

seq1  ATGCAGCTTTCTGCAGGTGCTATGTAGTCCAGCAATCAGGGTTGTGTTCA  150
      ||||||| ||||||||||| ||||||||||||||||||||||   | |||
seq2  ATGCAGC-TTCTGCAGGTG-TATGTAGTCCAGCAATCAGGGT--GGGTCA  138

seq1  GTAAGGGAAACAGCATGTAAGTCTTATTCTAGGCTTCTCTAGAAGGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGAAACAGCATGTAAGTCTTATTCTAGGCTTCTCTAGAAGGTGTG  188

seq1  TGTACACTGACTATGTTTGAAATCATCTTAAAATTCCATTTTCCTCACTA  250
      ||||||||||||||| |||||||||||||||||||||  |||||||||||
seq2  TGTACACTGACTATG-TTGAAATCATCTTAAAATTCCCATTTCCTCACTA  237

seq1  CAGAA-CACTCTCTGAGGAAACTTGGTTTACATAGACACGGTGAACTTCT  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCACTCTCTGAGGAAACTTGGTTTACATAGACACGGTGAACTTCT  287

seq1  ACTTTTGACAGCATGCCATATTAACTACTCTTAATGCAGTATCTGCTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTTTTGACAGCATGCCATATTAACTACTCTTAATGCAGTATCTGCT-AA  336

seq1  AACAATTTTCTAAAAATCTGGGTTAACAAGCTCAAATGGAGCCAAATCGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTTCTAAAAATCTGGGTTAACAAGCTCAAATGGAGCCAAATCGG  386

seq1  GTGAGGTGGTGCAAGCCTGCAAAGTCAACATTTTGAAGGTGCAAGCAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTGGTGCAAGCCTGCAAAGTCAACATTTTGAAGGTGCAAGCAGGA  436

seq1  AGGTTAAAAGTTCAAGATTAGCTTGGATTACAATAGTGAATTGGAGGTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAAAGTTCAAGATTAGCTTGGATTACAATAGTGAATTGGAGGTCA  486

seq1  GCTTGGGCTACCCAGGATCCCATCTCAAATAAACAAATGGATTCAAATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGCTACCCAGGATCCCATCTCAAATAAACAAATGGATTCAAATGA  536

seq1  ACTGATATTCTACTAGGACATATAGAAATTCTCAGAATGGATACAGAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATATTCTACTAGGACATATAGAAATTCTCAGAATGGATACAGAAGG  586

seq1  AATGAGCAAAGGAAATGAGCACGTTTGAGGTAAGCTGGGAACGAAGTCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCAAAGGAAATGAGCACGTTTGAGGTAAGCTGGGAACGAAGTCAG  636

seq1  CTTTAGTTCAGAGACTATCAATCAAATCTTGGCCATGTAGAATTCCTGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTCAGAGACTATCAATCAAATCTTGGCCATGTAGAATTCCTGCT  686

seq1  TGAACAGCTATGCATCCAGCCACTGTAAGAAGACAACGTCAAAAATCAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGCTATGCATCCAGCCACTGTAAGAAGACAACGTCAAAAATCAGT  736

seq1  TCTCAAGGAGGAGTCTAATAGAAGACAGGATCCCAAGAGGAATAGTCCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGAGGAGTCTAATAGAAGACAGGATCCCAAGAGGAATAGTCCCT  786

seq1  ATGTAAGAGTAGGTGAGCAATAAACTCTTTTCATATAAGAGGCCACTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGAGTAGGTGAGCAATAAACTCTTTTCATATAAGAGGCCACTAAG  836

seq1  AAAACATGCTTGTCTTGGACTTAAGAGGCCAATAAGGAAGAAAAAGTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGCTTGTCTTGGACTTAAGAGGCCAATAAGGAAGAAAAAGTCTC  886

seq1  CCTTGAGAGTATATAATGAAGTATTTTCATTACAGGTTCCAATTCAATCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGAGTATATAATGAAGTATTTTCATTACAGGTTCCAATTCAATCT  936

seq1  ATCGGTGCAATAGAATAAACCTCAACTACATAACTTAATTTGACCCTAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTGCAATAGAATAAACCTCAACTACATAACTTAATTTGACCCTAAG  986

seq1  TTTGATGGTGTCTTGCAGCAAAGTTGCAGAGTCAAATGCTAATATTCTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGGTGTCTTGCAGCAAAGTTGCAGAGTCAAATGCTAATATTCTCT  1036

seq1  AGCAAAACTCGATTTTAACTCCAGCAGTGAAATTTCTCTATATTTATAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACTCGATTTTAACTCCAGCAGTGAAATTTCTCTATATTTATAAC  1086

seq1  CCTGGAAAAGTGAATTC  1116
      |||||||||||||||||
seq2  CCTGGAAAAGTGAATTC  1103