BAC Information

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BAC

Clone NameB6Ng01-059J12
Chromosome6 (Build37)
Map Location 131,150,506 - 131,278,644
singlet/doubletdoublet
Overlap geneKlra2, LOC434095, 2010012C16Rik, Styk1
Upstream geneLOC100038894, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094
Downstream geneCsda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059J12.bB6Ng01-059J12.g
ACCDH880823DH880824
length1,0101,101
definitionDH880823|Mus musculus domesticus DNA, BAC clone: B6Ng01-059J12, 5' end.DH880824|Mus musculus domesticus DNA, BAC clone: B6Ng01-059J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,150,506 - 131,151,186)(131,277,521 - 131,278,644)
sequence
gaattcagcaaagtacctaggaagctacgtaagcagcttgaattaattat
aaagtaattaaatctactgatcactctttcatttcacacacaaggaaaat
tattgtccaccaagagaaaatacctgttttgaaactgaactccaatctcc
acatgcaggcttaatgcaactctgaagtgattaatcacacatgatctttc
catgaatcccacccttcaaaggataataacagaaaaaaaaatacaaggac
agaaaccacatcctagaaaaagcaagaaggtaatccctcaacaaaactaa
aagaagacagccacaggaacagaatgccaactctaacaacaaaaataata
ggaagcaacaattacttttccttaatatctcttaatatcaatgaactcaa
ctccacaatataaagacatagactaacagactgactacacaaacaggaac
caacatttttctgcttacaggaaacacacctcagggaaaacgatagacac
tacctcagaatgaaaggctggaaaaaaattttccaagcaaatggtctgaa
gaaacaagctggagtagccattctaatatcgaataaatatcgtcctccaa
cacagagttatcaaaaagacaaggaggggcacttcatactcatcaaaggt
aaaatcttccaagaggaactatcaattctgaatatctatgctccaaatac
aagggcatccacattcattaaatttagtaaagctcaaagcacacattgca
cctcacacaataatagtggaagacttcaacacaccacgttcatcaatgga
cacatcatggaaacagaaactaaacagggacacagtgaaattaacagaag
ttattaaacaaatggatctaacagatatctacagaacattttatcctaaa
acaaaagatataccatcttctcagcacctcatggtaccttctccaaaact
gaccacataaatgctcaaaaacaagcttcaaaatacacaaaatactgaaa
ttgtccatgc
gaattcaaaaacagagaagggatgacatttgctcaaatgtacatagaaca
ttcagggaaggcaggaattagggaagcatatgtgtgtggtactaggaaga
tggttggctgtgaatacaaaatcttctctcgtgagttagagcctagtgaa
ttttctttggatcaatttaaaaagagagataagcagagtttagcacctga
aggctgagcatatttgccattcatactacacttgtccagaatgctcttaa
cacttggttctcattagcagagagaatcttattatctttaaaattcattc
tagaagcatcctaagggatgactctcttgccttctttctctttcacagcc
ttttgaaaaactccaaaagaaccattgatttctacttgggagttactgtg
tagaaaaagaagtttaaaatctgctatatcccttttataagtacacaata
tttcatcttagatatagtgaaacaattcacaaacaggacagaagaattaa
aaccttgatgtacctgttatgatggtaaagctggtgtgctcctgaaactt
cagaggtggagataggaggaccaagatatcaaagccattcttagctacag
tgcaatggagtcagcctgggctatatgaaaccatgtcacaaaacaagaac
aacaacaaaaatccccaaagcaaaccccaaatcttgagttttaagaacta
gacatatttgtagaaggagggtgaaaaagttgctggatacactggtgacc
tctcctgcaaggacacattaaacctggatgttgggaaataagtgtcctgc
ttatgatattatgctttgatattgattgcattagattattgtttcataga
gtgaaagcagagaccatttcagatgttataacttgataaatagtaacagc
aattattacagatgatgtttatcatatatatcagtactgaaactaggtat
tacgtgctaagttatgctaaatgttttgtatgtgatatttctaatactta
cagtgacctagataacattacaactgagtagaaaagagaaaacattaaca
gctaggacactagaggcagtgtatttgatcaaatgggattattactaact
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_131150506_131151186
seq2: B6Ng01-059J12.b_45_725

seq1  GAATTCAGCAAAGTACCTAGGAAGCTACGTAAGCAGCTTGAATTAATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAAAGTACCTAGGAAGCTACGTAAGCAGCTTGAATTAATTAT  50

seq1  AAAGTAATTAAATCTACTGATCACTCTTTCATTTCACACACAAGGAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATTAAATCTACTGATCACTCTTTCATTTCACACACAAGGAAAAT  100

seq1  TATTGTCCACCAAGAGAAAATACCTGTTTTGAAACTGAACTCCAATCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCCACCAAGAGAAAATACCTGTTTTGAAACTGAACTCCAATCTCC  150

seq1  ACATGCAGGCTTAATGCAACTCTGAAGTGATTAATCACACATGATCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGGCTTAATGCAACTCTGAAGTGATTAATCACACATGATCTTTC  200

seq1  CATGAATCCCACCCTTCAAAGGATAATAACAGAAAAAAAAATACAAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATCCCACCCTTCAAAGGATAATAACAGAAAAAAAAATACAAGGAC  250

seq1  AGAAACCACATCCTAGAAAAAGCAAGAAGGTAATCCCTCAACAAAACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCACATCCTAGAAAAAGCAAGAAGGTAATCCCTCAACAAAACTAA  300

seq1  AAGAAGACAGCCACAGGAACAGAATGCCAACTCTAACAACAAAAATAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGACAGCCACAGGAACAGAATGCCAACTCTAACAACAAAAATAATA  350

seq1  GGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGAACTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGAACTCAA  400

seq1  CTCCACAATATAAAGACATAGACTAACAGACTGACTACACAAACAGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAATATAAAGACATAGACTAACAGACTGACTACACAAACAGGAAC  450

seq1  CAACATTTTTCTGCTTACAGGAAACACACCTCAGGGAAAACGATAGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTTTCTGCTTACAGGAAACACACCTCAGGGAAAACGATAGACAC  500

seq1  TACCTCAGAATGAAAGGCTGGAAAAAAATTTTCCAAGCAAATGGTCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAGAATGAAAGGCTGGAAAAAAATTTTCCAAGCAAATGGTCTGAA  550

seq1  GAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAATATCGTCCTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAATATCGTCCTCCAA  600

seq1  CACAGAGTTATCAAAAAGACAAGGAGGGGCACTTCATACTCATCAAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTTATCAAAAAGACAAGGAGGGGCACTTCATACTCATCAAAGGT  650

seq1  AAAATCTTCCAAGAGGAACTATCAATTCTGA  681
      |||||||||||||||||||||||||||||||
seq2  AAAATCTTCCAAGAGGAACTATCAATTCTGA  681

seq1: chr6_131277521_131278644
seq2: B6Ng01-059J12.g_68_1168 (reverse)

seq1  AAGTATAGTAAATTAATCCCATTTATGAAATCAAATACACCTGCCTCTAG  50
      |||| ||||||  |||||||||||     |||||||||| ||||||||||
seq2  AAGT-TAGTAA--TAATCCCATTT----GATCAAATACA-CTGCCTCTAG  42

seq1  TGTTCTTTGGCTGTTTATTGTTTTCTCTTTTTCTTACTCAGTTTGTAATG  100
      ||| |  | |||| ||| |||||||||||||   ||||||| ||||||||
seq2  TGTCC--TAGCTG-TTAATGTTTTCTCTTTT--CTACTCAG-TTGTAATG  86

seq1  TTATCTAAGTGTCACTGTAAGTATTAAGAAATATCACATACAAAACATTT  150
      |||||||   ||||||||||||||| ||||||||||||||||||||||||
seq2  TTATCTA--GGTCACTGTAAGTATT-AGAAATATCACATACAAAACATTT  133

seq1  AGCATAACTTAGCACGTAATACCTAGTTTCAGGTACTGATTATTATATGA  200
      ||||||||||||||||||||||||||||||| ||||||||   |||||| 
seq2  AGCATAACTTAGCACGTAATACCTAGTTTCA-GTACTGAT--ATATATG-  179

seq1  ATAAACATCATCTTGTAATAATTGCTGTTACTATTTATCAAGTTATAACA  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATAAACATCATC-TGTAATAATTGCTGTTACTATTTATCAAGTTATAACA  228

seq1  TCTTGAAATGGTCTCTGCTTTCACTCTATGAAACAATAATCTAATGCAAT  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TGAAATGGTCTCTGCTTTCACTCTATGAAACAATAATCTAATGCAAT  277

seq1  CAATATCAAAGCATAATATCATAAGCAGGACACTTATTTCCCAACATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCAAAGCATAATATCATAAGCAGGACACTTATTTCCCAACATCCA  327

seq1  GGTTTAATGTGTCCTTGCAGGAGAGGTCACCAGTGTATCCAGCAACTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAATGTGTCCTTGCAGGAGAGGTCACCAGTGTATCCAGCAACTTTT  377

seq1  TCACCCTCCTTCTACAAATATGTCTAGTTCTTAAAACTCAAGATTTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTCCTTCTACAAATATGTCTAGTTCTTAAAACTCAAGATTTGGGG  427

seq1  TTTGCTTTGGGGATTTTTGTTGTTGTTCTTGTTTTGTGACATGGTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTGGGGATTTTTGTTGTTGTTCTTGTTTTGTGACATGGTTTCAT  477

seq1  ATAGCCCAGGCTGACTCCATTGCACTGTAGCTAAGAATGGCTTTGATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCAGGCTGACTCCATTGCACTGTAGCTAAGAATGGCTTTGATATC  527

seq1  TTGGTCCTCCTATCTCCACCTCTGAAGTTTCAGGAGCACACCAGCTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTCCTATCTCCACCTCTGAAGTTTCAGGAGCACACCAGCTTTAC  577

seq1  CATCATAACAGGTACATCAAGGTTTTAATTCTTCTGTCCTGTTTGTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAACAGGTACATCAAGGTTTTAATTCTTCTGTCCTGTTTGTGAAT  627

seq1  TGTTTCACTATATCTAAGATGAAATATTGTGTACTTATAAAAGGGATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCACTATATCTAAGATGAAATATTGTGTACTTATAAAAGGGATATA  677

seq1  GCAGATTTTAAACTTCTTTTTCTACACAGTAACTCCCAAGTAGAAATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTTAAACTTCTTTTTCTACACAGTAACTCCCAAGTAGAAATCAA  727

seq1  TGGTTCTTTTGGAGTTTTTCAAAAGGCTGTGAAAGAGAAAGAAGGCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTTTGGAGTTTTTCAAAAGGCTGTGAAAGAGAAAGAAGGCAAGA  777

seq1  GAGTCATCCCTTAGGATGCTTCTAGAATGAATTTTAAAGATAATAAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATCCCTTAGGATGCTTCTAGAATGAATTTTAAAGATAATAAGATT  827

seq1  CTCTCTGCTAATGAGAACCAAGTGTTAAGAGCATTCTGGACAAGTGTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCTAATGAGAACCAAGTGTTAAGAGCATTCTGGACAAGTGTAGT  877

seq1  ATGAATGGCAAATATGCTCAGCCTTCAGGTGCTAAACTCTGCTTATCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGCAAATATGCTCAGCCTTCAGGTGCTAAACTCTGCTTATCTCT  927

seq1  CTTTTTAAATTGATCCAAAGAAAATTCACTAGGCTCTAACTCACGAGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAATTGATCCAAAGAAAATTCACTAGGCTCTAACTCACGAGAGA  977

seq1  AGATTTTGTATTCACAGCCAACCATCTTCCTAGTACCACACACATATGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGTATTCACAGCCAACCATCTTCCTAGTACCACACACATATGCT  1027

seq1  TCCCTAATTCCTGCCTTCCCTGAATGTTCTATGTACATTTGAGCAAATGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAATTCCTGCCTTCCCTGAATGTTCTATGTACATTTGAGCAAATGT  1077

seq1  CATCCCTTCTCTGTTTTTGAATTC  1124
      ||||||||||||||||||||||||
seq2  CATCCCTTCTCTGTTTTTGAATTC  1101