BAC Information

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BAC

Clone NameB6Ng01-059M04
Chromosome6 (Build37)
Map Location 56,387,091 - 56,535,955
singlet/doubletdoublet
Overlap geneEG666688
Upstream geneAdcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneLsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059M04.bB6Ng01-059M04.g
ACCDH880939DH880940
length1,1701,104
definitionDH880939|Mus musculus domesticus DNA, BAC clone: B6Ng01-059M04, 5' end.DH880940|Mus musculus domesticus DNA, BAC clone: B6Ng01-059M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,534,765 - 56,535,955)(56,387,091 - 56,388,200)
sequence
gaattctttatatattttggctatcagcccgctgtcagatgtaaggttgg
tgaagactttttccgcattctgtaggctgacattttgttcttctaatggt
gttctttgccttagagagtcttttcagtttcataaagtcccatttattaa
ttgttgatcttagtgccttagcttttggtgttctgttcagaaatttgtct
cctgtggtctaagcctgctgcatgctttggtttcgactttcatgtttctc
tgttgtaaatatagattgtgactctgacttcacttgtggtgctgagtcca
cggggaacagagctctgaggcccactcagcagacctctgtgtttagtatg
tgctctgaacatgcttccttctccaccctgtctattcagtgtttgccgag
atgctcagcgtgctacatgtagggtgagatgttccttaaacttacttgat
tgagatggatgtgtgaaagttagagtacaggtatgacttttttatgcatg
tgtgtaagaataagacagttgtggggagggttgtgtaagtcaagtaaata
tatacaaattaaacaagaaaacacctcgtttaataaaacctctgctattt
gtgatagatgcaatatttgaaactcgaaatatatacacaatttaagtaca
ctaaaatatagattgggtagtttcaatgagacgcaaacttttgcgaatgt
tagagaatgttacaacgataagaatttggtaagacaaaaggaaaattagt
cagctgataggctggtgaacagatgcttagcaacttcacgttcgtccagt
tggtcaccaatcagcttgtctcgtccctttctactgtatcctggtgatga
gcaggaagtgtgctgtgtcccctcgagccatggcctgtggggagtcactg
cccatcccatttgttcttggactttgggggtactagagtgcatgattgat
ttccctgtatccacgttacagttacataaatctctacagacggggagaga
atggcatcatcttcagttacttttctagtgctgtaaagggatcccatgac
catacagcttatcaaaagccttgcttactgttcaaaatgggttcaggtgg
gtggggatgcatacagctacgcatgcacttgagcgtagctgaagcttcat
ctgattccattaggaacagg
gaattcttggaaaagaaagaattggaggttgtgagcctgtttaacccatt
taatcctaatagtaatctctgaagcttgtgtttctgttcagaaaatgagg
aaacagggtaaacgggctccacataggttaagaactacatattacaaatt
catgcttgtgatatttgaggcctggatgtgttaaatgacttgacttaatc
attttcaaagttatggattaaaatctattttatctcttgtttcccaaata
tgtcttcatataaaattgaaggaaagggtaaagaaaacaaaggacagaaa
atagaggctttaagacatgaaacaaaccccagtggtaagtacattggaac
taaaatacaatacagatacaccaaacactgaacctatctagctaggcacc
cagcattgtccattctgagatgatgaagaccccagaccttaggataagag
ctactccatgaccctttccagagacagctggggcttggatttgaacaaga
aggaacattgctacccttcaagccctggaactttcttcataagactacac
tgaactctctgccccaagacattgagtatctgtccttcagcatccagcag
ggaaggagaagatgagggtacttaggcctaagatggatttgcacacctcc
gctagccatgtgtagcccagagggaggaagggtggtccattcattttcca
aattctgaatgtcaaagtctcactttcagtgtcacattctgctattagtg
ctaactaacatgaatcatgttaacctttagtggtagtttccaagctgttt
gcaggacgagtttgaggtagaagatcggggagcttaccgtgaatctaaat
tggatgctttcaatttatttcaatctcaccttgtatttaagtgagattcc
aactggacctgacatagaatcctagctttccctgtctactaccattagta
acagccaacaccgaagtagaattcctattagtctgcatttgaattcagcc
caaatcataggctcatctcctgagaaagtttcttcttctctgactagtac
aatggttatacttttattgctatgataaaacaccatcatgaggccaactc
agaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_56534765_56535955
seq2: B6Ng01-059M04.b_48_1217 (reverse)

seq1  CCTGCTTCCTAATTGTGAATCAGATGTAAGCTCTCAGCTACTGCTTCAGT  50
      |||| ||||||||   |||||||||| ||||| |||||||| |||  |||
seq2  CCTG-TTCCTAAT--GGAATCAGATG-AAGCT-TCAGCTAC-GCTCAAGT  44

seq1  GCCATGCCCGTCTGCCTGCTATTGCATTCCCCACCATCCTAGACTCACTT  100
      | |||||    |||     || |||| ||||||||  |||  || ||  |
seq2  G-CATGCGTAGCTG-----TA-TGCA-TCCCCACCCACCTGAACCCA--T  84

seq1  TCTGAGACAGTAAGCAAGCCTTTTTTGATAAGCTGTATTGGTCATGGGAT  150
      | ||| |||||||||||| |  ||||||||||||||| ||||||||||||
seq2  TTTGA-ACAGTAAGCAAGGC--TTTTGATAAGCTGTA-TGGTCATGGGAT  130

seq1  CCCTTTACAGCACTAGAAAAGTAACTG-AGATGATGCCATTCTCTCACCG  199
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  CCCTTTACAGCACTAGAAAAGTAACTGAAGATGATGCCATTCTCTCCCCG  180

seq1  TCTTGTAGAGATTTTATGTAACTGTAACGTGGATACAGGGAAATCAATCA  249
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TC-TGTAGAGA-TTTATGTAACTGTAACGTGGATACAGGGAAATCAATCA  228

seq1  TGCACTCTAGTACCCCCAAAGTCCAAGAACAAATGGGATGGGCAGTGACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCTAGTACCCCCAAAGTCCAAGAACAAATGGGATGGGCAGTGACT  278

seq1  CCCCACAGGCCATGGCTCGAGGGGACACAGCACACTTCCTGCTCATCACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGGCCATGGCTCGAGGGGACACAGCACACTTCCTGCTCATCACC  328

seq1  AGGATACAGTAGAAAGGGACGAGACAAGCTGATTGGTGACCAACTGGACG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACAGTAGAAAGGGACGAGACAAGCTGATTGGTGACCAACTGGACG  378

seq1  AACGTGAAGTTGCTAAGCATCTGTTCACCAGCCTATCAGCTGACTAATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGAAGTTGCTAAGCATCTGTTCACCAGCCTATCAGCTGACTAATTT  428

seq1  TCCTTTTGTCTTACCAAATTCTTATCGTTGTAACATTCTCTAACATTCGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGTCTTACCAAATTCTTATCGTTGTAACATTCTCTAACATTCGC  478

seq1  AAAAGTTTGCGTCTCATTGAAACTACCCAATCTATATTTTAGTGTACTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTGCGTCTCATTGAAACTACCCAATCTATATTTTAGTGTACTTA  528

seq1  AATTGTGTATATATTTCGAGTTTCAAATATTGCATCTATCACAAATAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGTATATATTTCGAGTTTCAAATATTGCATCTATCACAAATAGCA  578

seq1  GAGGTTTTATTAAACGAGGTGTTTTCTTGTTTAATTTGTATATATTTACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTATTAAACGAGGTGTTTTCTTGTTTAATTTGTATATATTTACT  628

seq1  TGACTTACACAACCCTCCCCACAACTGTCTTATTCTTACACACATGCATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACACAACCCTCCCCACAACTGTCTTATTCTTACACACATGCATA  678

seq1  AAAAAGTCATACCTGTACTCTAACTTTCACACATCCATCTCAATCAAGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCATACCTGTACTCTAACTTTCACACATCCATCTCAATCAAGTA  728

seq1  AGTTTAAGGAACATCTCACCCTACATGTAGCACGCTGAGCATCTCGGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGGAACATCTCACCCTACATGTAGCACGCTGAGCATCTCGGCAA  778

seq1  ACACTGAATAGACAGGGTGGAGAAGGAAGCATGTTCAGAGCACATACTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAATAGACAGGGTGGAGAAGGAAGCATGTTCAGAGCACATACTAA  828

seq1  ACACAGAGGTCTGCTGAGTGGGCCTCAGAGCTCTGTTCCCCGTGGACTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGGTCTGCTGAGTGGGCCTCAGAGCTCTGTTCCCCGTGGACTCA  878

seq1  GCACCACAAGTGAAGTCAGAGTCACAATCTATATTTACAACAGAGAAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACAAGTGAAGTCAGAGTCACAATCTATATTTACAACAGAGAAACA  928

seq1  TGAAAGTCGAAACCAAAGCATGCAGCAGGCTTAGACCACAGGAGACAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTCGAAACCAAAGCATGCAGCAGGCTTAGACCACAGGAGACAAAT  978

seq1  TTCTGAACAGAACACCAAAAGCTAAGGCACTAAGATCAACAATTAATAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACAGAACACCAAAAGCTAAGGCACTAAGATCAACAATTAATAAA  1028

seq1  TGGGACTTTATGAAACTGAAAAGACTCTCTAAGGCAAAGAACACCATTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTTTATGAAACTGAAAAGACTCTCTAAGGCAAAGAACACCATTAG  1078

seq1  AAGAACAAAATGTCAGCCTACAGAATGCGGAAAAAGTCTTCACCAACCTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAAATGTCAGCCTACAGAATGCGGAAAAAGTCTTCACCAACCTT  1128

seq1  ACATCTGACAGCGGGCTGATAGCCAAAATATATAAAGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGACAGCGGGCTGATAGCCAAAATATATAAAGAATTC  1170

seq1: chr6_56387091_56388200
seq2: B6Ng01-059M04.g_68_1171

seq1  GAATTCTTGGAAAAGAAAGAATTGGAGGTTGTGAGCCTGTTTAACCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAAAAGAAAGAATTGGAGGTTGTGAGCCTGTTTAACCCATT  50

seq1  TAATCCTAATAGTAATCTCTGAAGCTTGTGTTTCTGTTCAGAAAATGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTAATAGTAATCTCTGAAGCTTGTGTTTCTGTTCAGAAAATGAGG  100

seq1  AAACAGGGTAAACGGGCTCCACATAGGTTAAGAACTACATATTACAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGTAAACGGGCTCCACATAGGTTAAGAACTACATATTACAAATT  150

seq1  CATGCTTGTGATATTTGAGGCCTGGATGTGTTAAATGACTTGACTTAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGTGATATTTGAGGCCTGGATGTGTTAAATGACTTGACTTAATC  200

seq1  ATTTTCAAAGTTATGGATTAAAATCTATTTTATCTCTTGTTTCCCAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAAGTTATGGATTAAAATCTATTTTATCTCTTGTTTCCCAAATA  250

seq1  TGTCTTCATATAAAATTGAAGGAAAGGGTAAAGAAAACAAAGGACAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCATATAAAATTGAAGGAAAGGGTAAAGAAAACAAAGGACAGAAA  300

seq1  ATAGAGGCTTTAAGACATGAAACAAACCCCAGTGGTAAGTACATTGGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGCTTTAAGACATGAAACAAACCCCAGTGGTAAGTACATTGGAAC  350

seq1  TAAAATACAATACAGATACACCAAACACTGAACCTATCTAGCTAGGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACAATACAGATACACCAAACACTGAACCTATCTAGCTAGGCACC  400

seq1  CAGCATTGTCCATTCTGAGATGATGAAGACCCCAGACCTTAGGATAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTGTCCATTCTGAGATGATGAAGACCCCAGACCTTAGGATAAGAG  450

seq1  CTACTCCATGACCCTTTCCAGAGACAGCTGGGGCTTGGATTTGAACAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCATGACCCTTTCCAGAGACAGCTGGGGCTTGGATTTGAACAAGA  500

seq1  AGGAACATTGCTACCCTTCAAGCCCTGGAACTTTCTTCATAAGACTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATTGCTACCCTTCAAGCCCTGGAACTTTCTTCATAAGACTACAC  550

seq1  TGAACTCTCTGCCCCAAGACATTGAGTATCTGTCCTTCAGCATCCAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTCTGCCCCAAGACATTGAGTATCTGTCCTTCAGCATCCAGCAG  600

seq1  GGAAGGAGAAGATGAGGGTACTTAGGCCTAAGATGGATTTGCACACCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGAAGATGAGGGTACTTAGGCCTAAGATGGATTTGCACACCTCC  650

seq1  GCTAGCCATGTGTAGCCCAGAGGGAGGAAGGGTGGTCCATTCATTTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCATGTGTAGCCCAGAGGGAGGAAGGGTGGTCCATTCATTTTCCA  700

seq1  AATTCTGAATGTCAAAGTCTCACTTTCAGTGTCACATTCTGCTATTAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGAATGTCAAAGTCTCACTTTCAGTGTCACATTCTGCTATTAGTG  750

seq1  CTAACTAACATGAATCATGTTAACCTTTAGTGGTAGTTTCCAAGCTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAACATGAATCATGTTAACCTTTAGTGGTAGTTTCCAAGCTGTTT  800

seq1  GCAGGACGAGTTTGAGGTAGAAGATCGGGGAGCTTACCGTGAATCTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACGAGTTTGAGGTAGAAGATCGGGGAGCTTACCGTGAATCTAAAT  850

seq1  TGGATGCTTTCAATTTATTTCAATCTCACCTTGTTATTTAAGGTGAGATT  900
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  TGGATGCTTTCAATTTATTTCAATCTCACCTTG-TATTTAA-GTGAGATT  898

seq1  CCAACTGGACCTGACATAGAATCCTAGCTTTCCCCTGTCTACTACCATTA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCAACTGGACCTGACATAGAATCCTAGCTTT-CCCTGTCTACTACCATTA  947

seq1  GTAACAGCCAACACCGAAGTAAGAATTCCTATTAGTCTGCATTTGAATTC  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTAACAGCCAACACCGAAGT-AGAATTCCTATTAGTCTGCATTTGAATTC  996

seq1  AGCCCAAATCATAGGCTCCATCTCCTGAGACAGTTTCTTCTTCTCTGACA  1050
      ||||||||||||||||| |||||||||||| |||||||||||||||||| 
seq2  AGCCCAAATCATAGGCT-CATCTCCTGAGAAAGTTTCTTCTTCTCTGAC-  1044

seq1  TAGTACCATTGTTATACTTTTATTGCTATGATAAAACACCATCATGAAGG  1100
      |||||| || ||||||||||||||||||||||||||||||||||||| | 
seq2  TAGTACAATGGTTATACTTTTATTGCTATGATAAAACACCATCATGAGGC  1094

seq1  CAACTCAGAA  1110
      ||||||||||
seq2  CAACTCAGAA  1104