BAC Information

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BAC

Clone NameB6Ng01-059M06
Chromosome6 (Build37)
Map Location 30,262,784 - 30,378,135
singlet/doubletdoublet
Overlap geneZc3hc1, 2410127E18Rik
Upstream geneBC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h
Downstream gene2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803, Mkln1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059M06.bB6Ng01-059M06.g
ACCDH880943DH880944
length1,097657
definitionDH880943|Mus musculus domesticus DNA, BAC clone: B6Ng01-059M06, 5' end.DH880944|Mus musculus domesticus DNA, BAC clone: B6Ng01-059M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,377,029 - 30,378,135)(30,262,784 - 30,263,440)
sequence
gaattcttagcctatcatatcatcacttggttcttccttagaatcacatc
ctacacttgaaggttttttgatgtggttatggtggtctgccactgatact
agtgaggtaatctactctactatctaagatacattaagagaatctaactt
ccccaaaacttatcattataatcccaacagtggtcaatataaaacataaa
tttaaaactaaggcctagactttttgcttcaattttggctgttaagacaa
cttaaagagaacagttttgaatttagaaaatccattcaaaattcccttca
acccacaggaagcacagacctcttgcctgttatcacccacctctcaagaa
cctgttagggatccttatgatgggacaggactgaatgaagcgcctcctaa
ctgggtcccaccgtattttcttcttacctgtcaccacaattatcagcagt
aagtcagacacatacaacacatggcaagtaatacatagttactgtattat
aaagacagaaaaacaggaaacaaaacaatacttgaatacagaaggaaagt
gatataaagtctcgtttaactctggaagttaaaatgacataatacataag
cagtggtcagagttttcaactcttatccccaacaacacaattatgtgcac
ctttgtaaagctgttcaacagcctcaaatcatcaccaatgccgtctgcgg
caaacatttaccaggaattttagaagcgattagacagaacagccttttaa
agccaataaagccaaaaggagctccacccaaaagcatcacgcacagcaca
ggctcctctgctcaagggttttgttttgtttttactagttacaaagcaat
ggatacggacctttaataagaaatctgctgggctagcaagatgcctcagc
agttgagagcactgactactcttccagaggtcctgagttcaaatcccagc
accacatggtggctcacaaccacccacatgagatctgtgccctcttctgt
tgcatctgaagtcagctacagtgtacttacgtttaataataaaaaatctt
tgaccggagccaccagcagcaagtgggggcgactggagcgagcacag
gaattcactctatagaccaggctggcctcaaactcagaaatctgcctgcc
tctgcctccaccaaggactgggattaaaattgtgcaccaccactgcccgg
cccctgactatttttattcacacctatagaccaccagcaagccgataccc
ttacctatatattcatcaatcccaagttatccccaacatctttctgttgc
aggatatttgatcactctgtgaaccctgagactgtgttgtttactggggg
ggaaaaaaaactgtttctagttgtggtgtggcttagccttagtacacacc
tttaatgccaaataatggaggtacaattagttatagaaagaaacacccat
gtttgaaagtaatagactaagtggtagagaaagtgacaaaacaaaacaaa
aaaccaaaccccacccccaggcccccaaaagagagagaaacattttatag
aataggatatgcctaattctcacaagaagagatgggaaaggggagctgtc
tgaggagcagtactaacagaggaggcagttttactgggactgtgatacag
agacaggttgcagagagagaacaagctagacatatgtgaaggtaaaagga
accagaaaatgagaaagatcccaaagattagaacatattgccaaagttag
tatgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_30377029_30378135
seq2: B6Ng01-059M06.b_50_1146 (reverse)

seq1  CTGTGCTCGCTCCAGTCGGCCCCACTTGGCTTGGCCTGGTGTGCTCCGGT  50
      |||||||||||||||||| |||||||| |||    |||||| ||||||||
seq2  CTGTGCTCGCTCCAGTCGCCCCCACTT-GCT---GCTGGTG-GCTCCGGT  45

seq1  CAAAAGATTTATTTATTATTAAACGTAAGTACACTGTAGCTGACTTCAGA  100
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  C-AAAGATTT-TTTATTATTAAACGTAAGTACACTGTAGCTGACTTCAGA  93

seq1  TGCAACAGAAGAGGGCACCAGATCTCATTGTGGGTGGTTGTGAGCCACCA  150
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  TGCAACAGAAGAGGGCA-CAGATCTCA-TGTGGGTGGTTGTGAGCCACCA  141

seq1  TGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGTAGTCAGTGCT  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGG-TGCTGGGATTTGAACTCAGGACCTCTGGAAGAGTAGTCAGTGCT  190

seq1  CTCAACTGCTGAGGCATCTTGCTAGCCCAGCAGATTTCTTATTAAAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTGCTGAGGCATCTTGCTAGCCCAGCAGATTTCTTATTAAAGGTC  240

seq1  CGTATCCATTGCTTTGTAACTAGTAAAAACAAAACAAAACCCTTGAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCCATTGCTTTGTAACTAGTAAAAACAAAACAAAACCCTTGAGCAG  290

seq1  AGGAGCCTGTGCTGTGCCTGATGCTTTTGGGTGGAGCTCCTTTTGGCTTT  350
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGAGCCTGTGCTGTGCGTGATGCTTTTGGGTGGAGCTCCTTTTGGCTTT  340

seq1  ATTGGCTTTAAAAGGCTGTTCTGTCTAATCGCTTCTAAAATTCCTGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTTTAAAAGGCTGTTCTGTCTAATCGCTTCTAAAATTCCTGGTAA  390

seq1  ATGTTTGCCGCAGACGGCATTGGTGATGATTTGAGGCTGTTGAACAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCCGCAGACGGCATTGGTGATGATTTGAGGCTGTTGAACAGCTT  440

seq1  TACAAAGGTGCACATAATTGTGTTGTTGGGGATAAGAGTTGAAAACTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGTGCACATAATTGTGTTGTTGGGGATAAGAGTTGAAAACTCTG  490

seq1  ACCACTGCTTATGTATTATGTCATTTTAACTTCCAGAGTTAAACGAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCTTATGTATTATGTCATTTTAACTTCCAGAGTTAAACGAGACT  540

seq1  TTATATCACTTTCCTTCTGTATTCAAGTATTGTTTTGTTTCCTGTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCACTTTCCTTCTGTATTCAAGTATTGTTTTGTTTCCTGTTTTTC  590

seq1  TGTCTTTATAATACAGTAACTATGTATTACTTGCCATGTGTTGTATGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTATAATACAGTAACTATGTATTACTTGCCATGTGTTGTATGTGT  640

seq1  CTGACTTACTGCTGATAATTGTGGTGACAGGTAAGAAGAAAATACGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTACTGCTGATAATTGTGGTGACAGGTAAGAAGAAAATACGGTGG  690

seq1  GACCCAGTTAGGAGGCGCTTCATTCAGTCCTGTCCCATCATAAGGATCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGTTAGGAGGCGCTTCATTCAGTCCTGTCCCATCATAAGGATCCC  740

seq1  TAACAGGTTCTTGAGAGGTGGGTGATAACAGGCAAGAGGTCTGTGCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGTTCTTGAGAGGTGGGTGATAACAGGCAAGAGGTCTGTGCTTCC  790

seq1  TGTGGGTTGAAGGGAATTTTGAATGGATTTTCTAAATTCAAAACTGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTGAAGGGAATTTTGAATGGATTTTCTAAATTCAAAACTGTTCT  840

seq1  CTTTAAGTTGTCTTAACAGCCAAAATTGAAGCAAAAAGTCTAGGCCTTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTTGTCTTAACAGCCAAAATTGAAGCAAAAAGTCTAGGCCTTAG  890

seq1  TTTTAAATTTATGTTTTATATTGACCACTGTTGGGATTATAATGATAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTTATGTTTTATATTGACCACTGTTGGGATTATAATGATAAGT  940

seq1  TTTGGGGAAGTTAGATTCTCTTAATGTATCTTAGATAGTAGAGTAGATTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGAAGTTAGATTCTCTTAATGTATCTTAGATAGTAGAGTAGATTA  990

seq1  CCTCACTAGTATCAGTGGCAGACCACCATAACCACATCAAAAAACCTTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTAGTATCAGTGGCAGACCACCATAACCACATCAAAAAACCTTCA  1040

seq1  AGTGTAGGATGTGATTCTAAGGAAGAACCAAGTGATGATATGATAGGCTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGGATGTGATTCTAAGGAAGAACCAAGTGATGATATGATAGGCTA  1090

seq1  AGAATTC  1107
      |||||||
seq2  AGAATTC  1097

seq1: chr6_30262784_30263440
seq2: B6Ng01-059M06.g_69_725

seq1  GAATTCACTCTATAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTATAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCC  50

seq1  TCTGCCTCCACCAAGGACTGGGATTAAAATTGTGCACCACCACTGCCCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCACCAAGGACTGGGATTAAAATTGTGCACCACCACTGCCCGG  100

seq1  CCCCTGACTATTTTTATTCACACCTATAGACCACCAGCAAGCCGATACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGACTATTTTTATTCACACCTATAGACCACCAGCAAGCCGATACCC  150

seq1  TTACCTATATATTCATCAATCCCAAGTTATCCCCAACATCTTTCTGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATATATTCATCAATCCCAAGTTATCCCCAACATCTTTCTGTTGC  200

seq1  AGGATATTTGATCACTCTGTGAACCCTGAGACTGTGTTGTTTACTGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTTGATCACTCTGTGAACCCTGAGACTGTGTTGTTTACTGGGGG  250

seq1  GGAAAAAAAACTGTTTCTAGTTGTGGTGTGGCTTAGCCTTAGTACACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAACTGTTTCTAGTTGTGGTGTGGCTTAGCCTTAGTACACACC  300

seq1  TTTAATGCCAAATAATGGAGGTACAATTAGTTATAGAAAGAAACACCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCCAAATAATGGAGGTACAATTAGTTATAGAAAGAAACACCCAT  350

seq1  GTTTGAAAGTAATAGACTAAGTGGTAGAGAAAGTGACAAAACAAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAGTAATAGACTAAGTGGTAGAGAAAGTGACAAAACAAAACAAA  400

seq1  AAACCAAACCCCACCCCCAGGCCCCCAAAAGAGAGAGAAACATTTTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACCCCACCCCCAGGCCCCCAAAAGAGAGAGAAACATTTTATAG  450

seq1  AATAGGATATGCCTAATTCTCACAAGAAGAGATGGGAAAGGGGAGCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATATGCCTAATTCTCACAAGAAGAGATGGGAAAGGGGAGCTGTC  500

seq1  TGAGGAGCAGTACTAACAGAGGAGGCAGTTTTACTGGGACTGTGATACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGCAGTACTAACAGAGGAGGCAGTTTTACTGGGACTGTGATACAG  550

seq1  AGACAGGTTGCAGAGAGAGAACAAGCTAGACACAGGTGAAGGCAGAAGGA  600
      |||||||||||||||||||||||||||||||| | ||||||| | |||||
seq2  AGACAGGTTGCAGAGAGAGAACAAGCTAGACATATGTGAAGGTAAAAGGA  600

seq1  ACCAGAAAATGAGAAAGATCCCAAAGATTAGAACATATTGTCAAAGTTAG  650
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACCAGAAAATGAGAAAGATCCCAAAGATTAGAACATATTGCCAAAGTTAG  650

seq1  TATGAGG  657
      ||||| |
seq2  TATGATG  657