BAC Information

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BAC

Clone NameB6Ng01-060H05
Chromosome6 (Build37)16 (Build37)
Map Location 18,834,021 - 18,834,59770,814,120 - 70,815,126
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060H05.bB6Ng01-060H05.g
ACCDH881420DH881421
length9251,021
definitionDH881420|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H05, 5' end.DH881421|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,834,021 - 18,834,597)(70,814,120 - 70,815,126)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttgaatcttg
tcaagtgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcaagaattttattgaggatttttgc
attgatattcataagagaaattggtctgaagttatctttgttggatcttt
ctgtggtttaggtatcagagtaatagtggcttcataaaatgagttgggta
gagaaccttctacttctattttgtgaaatagtttgtgcagaactggaatt
agatcttctttgaaggtctgatagaactctgcactaaacccgtctgatcc
tgggcttttttgggctgggagactattaataactgcttctatttcttcag
gtgatatgggactgtttagatggtcaacttgatccttattcaactttggt
acctggtatctgtccagaaatttgtccatttcgtccaggttttccagttt
tgttgagtataaccttttgtagaaggatctgatggtgttttggatttctt
caggatctgttgttatgtctcccttttcatttctgattttgttaattagg
attttgtccctgtgccctttagtgagtctagctaagggtttatctatctt
gttgattttctcaaagaaccaactcctcgtttggttaattctttgaatag
ttcttcttgtttccacttggctgatttcacccctgagtttaattatttcc
tgacgtctactcctcttgggtgaatttgcttccttttttctagagctttt
agatgtgttgtcaagctgctagtat
gaattctcaacggaggaatatcaaatggctgagaagcatgtaaaggagtg
ttcaacatccttaattatcagggaaatgtaaatcaaaagaaccctgagat
tccacctcacaccagccagaatggctaagatcaaaaactcaggtgacagc
agatgttggtgaggatgtgaagaaagaggcacacccctccattgctggtg
ggattgaaagctggtacaaccactctggaagtcagtttggcagttcctca
gaaaattggtatggtactaccggaggacccagctataccactccttggca
tacacccaaaagatgctccaatatataacaagaacacatactccactatg
ttcataacagccttatttataatagccagaagttaaagaacccagctgtc
cctcaacagaagaatagatacagaaaatatggttcatatatacagtggga
tattactcagctatttaaaacaataaactcatgaaattcttaagcaaatg
gaagaatatttaatactattgatgtttgcaacccctacccctagaggggg
attaagaacggacattaagttggactctcaagacctgcgaattactgaca
gcccctcaggaagaggtaggccttttcctcattcgtgatggacccattga
ttgacctactcttctgcagataaccaagggtagagaggattcataagcac
agtggctaggaaatatccagaagacatctttttattcttccactgaatca
cttccaacccaagcttgggcaagtaagtaactgattaaacttagcaaccc
acacacaagaagacatgaaagtaggaggaagaattctgctgcgtagcagg
gaaccagtgggaggaggaaggggatgaaacagagtgacggggagttgaca
tttgggatatgaatatatcaaattgtcaacatttaaacgaaaaaaagagt
taccattattgaggaaaatattaattttgaattaacccgctttattagaa
atctgagatcatttattaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18834021_18834597
seq2: B6Ng01-060H05.b_49_622 (reverse)

seq1  CAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTG  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATAAGGATCAAGTTG  50

seq1  ACCTTCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAATTATTAAT  100
      ||| |||||||||||||||||||||| |||||||||||||| ||||||||
seq2  ACCATCTAAACAGTCCCATATCACCTGAAGAAATAGAAGCAGTTATTAAT  100

seq1  AGTCTCCCAG-CCAAAAAAGCCCAGGATCAGACGGGTTTAGTGCAGAGTT  149
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCAGCCCAAAAAAGCCCAGGATCAGACGGGTTTAGTGCAGAGTT  150

seq1  CTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTC  200

seq1  ACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACT  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAAAATAGAAGTAGAAGGTTCTCTACCCAACTCATTTTATGAAGCCACT  250

seq1  ATTACTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTT  299
      ||||||||||||||||||||||||||||| |||||||||||    |||||
seq2  ATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGAT----AACTT  296

seq1  CAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTC  349
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGACCAATTTCTCTTATGAATATCAATGCAAAAATCCTCAATAAAATTC  346

seq1  TTGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAA  396

seq1  GTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCAT  449
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTAGGTTTTATTCCAGGAATGCAGGGATGGTTTAATATACGAAAATCCAT  446

seq1  CAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCA  496

seq1  TCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATG  549
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  TCTCGTTAGATGCAGAAAAAGCACTTGACAAGATTCAACACCCATTCATG  546

seq1  ATAAAAGTTTTGGAAAGATCAGGAATTC  577
      ||||||||||||||||||||||||||||
seq2  ATAAAAGTTTTGGAAAGATCAGGAATTC  574

seq1: chr16_70814120_70815126
seq2: B6Ng01-060H05.g_90_1086 (reverse)

seq1  TCTTAATAAATGTATCTCAGATTTCTAATAAAGCGTGTTTGAATTTCAAA  50
      |||||||||||| |||||||||||||||||||||| |||   | ||||||
seq2  TCTTAATAAATG-ATCTCAGATTTCTAATAAAGCGGGTT---AATTCAAA  46

seq1  ATTAATATTTTCCTCAAATATTGGTAACTCTTTTTTTTTCGTTTTAAATT  100
      ||||||||||||||| |||| |||||||||  ||||||||| ||||||| 
seq2  ATTAATATTTTCCTC-AATAATGGTAACTC--TTTTTTTCG-TTTAAAT-  91

seq1  GTTTGACAATTTGATATATTCATATCCCAAATGTCAACTCCCCGTCACTC  150
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTTGACAATTTGATATATTCATATCCCAAATGTCAACTCCCCGTCACTC  140

seq1  TGTTTCATCCCCTTCCTCCTCCCACTGGTTCCCTGCTACGCAGCAGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATCCCCTTCCTCCTCCCACTGGTTCCCTGCTACGCAGCAGAATT  190

seq1  CTTCCTCCTACTTTCATGTCTTCTTGTGTGTGGGTTGCTAAGTTTAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTACTTTCATGTCTTCTTGTGTGTGGGTTGCTAAGTTTAATCA  240

seq1  GTTACTTACTTGCCCAAGCTTGGGTTGGAAGTGATTCAGTGGAAGAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTACTTGCCCAAGCTTGGGTTGGAAGTGATTCAGTGGAAGAATAA  290

seq1  AAAGATGTCTTCTGGATATTTCCTAGCCACTGTGCTTATGAATCCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTCTTCTGGATATTTCCTAGCCACTGTGCTTATGAATCCTCTCT  340

seq1  ACCCTTGGTTATCTGCAGAAGAGTAGGTCAATCAATGGGTCCATCACGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGGTTATCTGCAGAAGAGTAGGTCAATCAATGGGTCCATCACGAA  390

seq1  TGAGGAAAAGGCCTACCTCTTCCTGAGGGGCTGTCAGTAATTCGCAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAAAGGCCTACCTCTTCCTGAGGGGCTGTCAGTAATTCGCAGGTC  440

seq1  TTGAGAGTCCAACTTAATGTCCGTTCTTAATCCCCCTCTAGGGGTAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTCCAACTTAATGTCCGTTCTTAATCCCCCTCTAGGGGTAGGGG  490

seq1  TTGCAAACATCAATAGTATTAAATATTCTTCCATTTGCTTAAGAATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACATCAATAGTATTAAATATTCTTCCATTTGCTTAAGAATTTCA  540

seq1  TGAGTTTATTGTTTTAAATAGCTGAGTAATATCCCACTGTATATATGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTATTGTTTTAAATAGCTGAGTAATATCCCACTGTATATATGAAC  590

seq1  CATATTTTCTGTATCTATTCTTCTGTTGAGGGACAGCTGGGTTCTTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTCTGTATCTATTCTTCTGTTGAGGGACAGCTGGGTTCTTTAAC  640

seq1  TTCTGGCTATTATAAATAAGGCTGTTATGAACATAGTGGAGTATGTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTATTATAAATAAGGCTGTTATGAACATAGTGGAGTATGTGTTC  690

seq1  TTGTTATATATTGGAGCATCTTTTGGGTGTATGCCAAGGAGTGGTATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATATATTGGAGCATCTTTTGGGTGTATGCCAAGGAGTGGTATAGC  740

seq1  TGGGTCCTCCGGTAGTACCATACCAATTTTCTGAGGAACTGCCAAACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTCCGGTAGTACCATACCAATTTTCTGAGGAACTGCCAAACTGA  790

seq1  CTTCCAGAGTGGTTGTACCAGCTTTCAATCCCACCAGCAATGGAGGGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAGTGGTTGTACCAGCTTTCAATCCCACCAGCAATGGAGGGGTG  840

seq1  TGCCTCTTTCTTCACATCCTCACCAACATCTGCTGTCACCTGAGTTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTTTCTTCACATCCTCACCAACATCTGCTGTCACCTGAGTTTTTG  890

seq1  ATCTTAGCCATTCTGGCTGGTGTGAGGTGGAATCTCAGGGTTCTTTTGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGCCATTCTGGCTGGTGTGAGGTGGAATCTCAGGGTTCTTTTGAT  940

seq1  TTACATTTCCCTGATAATTAAGGATGTTGAACACTCCTTTACATGCTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCCCTGATAATTAAGGATGTTGAACACTCCTTTACATGCTTCT  990

seq1  CAGCCAT  1007
      |||||||
seq2  CAGCCAT  997