BAC Information

Click to search

BAC

Clone NameB6Ng01-060J21
Chromosome6 (Build37)7 (Build37)
Map Location 18,835,441 - 18,835,96812,986,516 - 12,987,628
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060J21.bB6Ng01-060J21.g
ACCDH881543DH881544
length9341,105
definitionDH881543|Mus musculus domesticus DNA, BAC clone: B6Ng01-060J21, 5' end.DH881544|Mus musculus domesticus DNA, BAC clone: B6Ng01-060J21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,441 - 18,835,968)(12,986,516 - 12,987,628)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
caaaagatttaggataggtaaggatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcaatcttacagcgcaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggctttcccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggaaataggtatggatcaattcgaa
atcttctacatgataacaaccagttgtgccagcaccatttgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatctctgggttttcaattctgttccattggt
ctacttgtctgtcgctataccagtaccatgcaggttttatcaaaattgct
ctgtagtacatctttaggtcgagcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatactaggttttttgttattccagatga
atctgccgattgccctttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttcgcaagatagccatttt
tactatattgatcctgccgatccctgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagacttgaagttcttgtcatac
atatctttcacttccttagttagagtcatgccta
gaattcaaaaaatgattttaattgtgttcaaataattcaaaggcatgaat
aaactctaaaagaacaaaaagatgaataaagtgagaataaataaatgaga
atgaataaagtgatataaaaataacagcagaaatgctgaggaacacccaa
cctgaaatgacactgcaagaaaaaaaaacttaataaaccaaataaaatca
tgagtagagagcattatcaagaaaaaggaacaggcagaaaacaaagagtg
aggtatggaagtcaagattgaggaattagataatgtagtaagtatcaata
ataaatagaaaagaaaatatgaacaaagactggaggagttctaaaccacc
atgaaaatatctgaccttcagattgtagaaatggcaaaaaggataaaact
gtggtgaagacatggatagtattttcaattttttttctaagcatagaaaa
aaaaatgcttgtacaagaattctgcagaattccaaatatataaaaccaga
aaagaaaccctttatgccatataaagttaaaatattaaaaataaataata
aagaatgagtaattatatttaaactaaaaatgtttaaactcttcaaaata
tgaaaatatcagacccagcatatggacctaccagaacttcaaagaataac
taatactaccatttctcaaattgttccaataagcaggtaaggaaagaatg
cttccaaattcttttttacaaagtcaatgtttctcttgatgccaaaacaa
gacaaagactcaacataaaaaactgaattataggtgaatcttcttgatga
atttagatgcaaaaaggctcagtaaaatagctacaaactaattcaaatta
gtcttttaacctcaatctctgttttctgcctgatccattctattaatgaa
gctttctacaaagaatttctatttggcttattaagttttcattacaaata
tcattcaggttgggtgtctatcatttctgccttactttcatatttgggat
cctttttccattaactcattcctttagttttgatcaatttaggaagagta
tctactgttaatccatcgccttatcctcaagaatgccagggtggtccatt
tacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835441_18835968
seq2: B6Ng01-060J21.b_42_569 (reverse)

seq1  CCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG  50

seq1  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGG  100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTGG  100

seq1  CACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATC  150
      ||||||||||||||||| ||||||||| |  |||| ||||||||| ||| 
seq2  CACAACTGGTTGTTATCATGTAGAAGATTTCGAATTGATCCATACCTATT  150

seq1  TCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAAC  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAAC  200

seq1  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  250
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGGAAAGCCTTGAAGAT  250

seq1  ATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGT  299
      ||||||| ||||||||| ||||||||||||||||||||||| || |||||
seq2  ATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGCGCTGT  300

seq1  GAGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  349
       || | |||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGATTGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  350

seq1  AGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  400

seq1  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATA  449
      |||||| ||||||||||||||||   | ||||||||||||||||||||||
seq2  AGGATCCTTACCTATCCTAAATC-TTTTGGGGACTAATATCCAACATATA  449

seq1  TAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATA  499
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAA  499

seq1  AATGGGGCTCAGAACTGAACAAAGAATTC  528
      |||||||||||||||||||||||||||||
seq2  AATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr7_12986516_12987628
seq2: B6Ng01-060J21.g_69_1173

seq1  GAATTCAAAAAATGATTTTAATTGTGTTCAAATAATTCAAAGGCATGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAAATGATTTTAATTGTGTTCAAATAATTCAAAGGCATGAAT  50

seq1  AAACTCTAAAAGAACAAAAAGATGAATAAAGTGAGAATAAATAAATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTAAAAGAACAAAAAGATGAATAAAGTGAGAATAAATAAATGAGA  100

seq1  ATGAATAAAGTGATATAAAAATAACAGCAGAAATGCTGAGGAACACCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAAGTGATATAAAAATAACAGCAGAAATGCTGAGGAACACCCAA  150

seq1  CCTGAAATGACACTGCAAGAAAAAAAAACTTAATAAACCAAATAAAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAATGACACTGCAAGAAAAAAAAACTTAATAAACCAAATAAAATCA  200

seq1  TGAGTAGAGAGCATTATCAAGAAAAAGGAACAGGCAGAAAACAAAGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGAGAGCATTATCAAGAAAAAGGAACAGGCAGAAAACAAAGAGTG  250

seq1  AGGTATGGAAGTCAAGATTGAGGAATTAGATAATGTAGTAAGTATCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGGAAGTCAAGATTGAGGAATTAGATAATGTAGTAAGTATCAATA  300

seq1  ATAAATAGAAAAGAAAATATGAACAAAGACTGGAGGAGTTCTAAACCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGAAAAGAAAATATGAACAAAGACTGGAGGAGTTCTAAACCACC  350

seq1  ATGAAAATATCTGACCTTCAGATTGTAGAAATGGCAAAAAGGATAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATATCTGACCTTCAGATTGTAGAAATGGCAAAAAGGATAAAACT  400

seq1  GTGGTGAAGACATGGATAGTATTTTCAATTTTTTTTCTAAGCATAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAAGACATGGATAGTATTTTCAATTTTTTTTCTAAGCATAGAAAA  450

seq1  AAAAATGCTTGTACAAGAATTCTGCAGAATTCCAAATATATAAAACCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCTTGTACAAGAATTCTGCAGAATTCCAAATATATAAAACCAGA  500

seq1  AAAGAAACCCTTTATGCCATATAAAGTTAAAATATTAAAAATAAATAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCCTTTATGCCATATAAAGTTAAAATATTAAAAATAAATAATA  550

seq1  AAGAATGAGTAATTATATTTAAACTAAAAATGTTTAAACTCTTCAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAGTAATTATATTTAAACTAAAAATGTTTAAACTCTTCAAAATA  600

seq1  TGAAAATATCAGACCCAGCATATGGACCTACCAGAACTTCAAAGAATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATATCAGACCCAGCATATGGACCTACCAGAACTTCAAAGAATAAC  650

seq1  TAATACTACCATTTCTCAAATTGTTCCAATAAGCAGGTAAGGAAAGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTACCATTTCTCAAATTGTTCCAATAAGCAGGTAAGGAAAGAATG  700

seq1  CTTCCAAATTC-TTTTTACAAAGTCAATGTTTCTCTTGATGCCAAAACAA  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAATTCTTTTTTACAAAGTCAATGTTTCTCTTGATGCCAAAACAA  750

seq1  GACAAAGACTCAACATAAAAAACTGAATTATAGGTGAATCTTCTTGATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGACTCAACATAAAAAACTGAATTATAGGTGAATCTTCTTGATGA  800

seq1  ATTTAGATGCAAAAAGGCTCAGTAAAATAGCTACAAACTAAATTCAAATT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTTAGATGCAAAAAGGCTCAGTAAAATAGCTACAAACT-AATTCAAATT  849

seq1  AGTCTTTTATACCTCAATCTCTGTTTTCTGCCTGATCCATTCTATTAATG  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTA-ACCTCAATCTCTGTTTTCTGCCTGATCCATTCTATTAATG  898

seq1  AAGCTTTCTACAAAGAA-TTCTATTTGGCTTATTAAGTTTTTCATTTACA  948
      ||||||||||||||||| ||||||||||||||||||| ||||||||   |
seq2  AAGCTTTCTACAAAGAATTTCTATTTGGCTTATTAAG-TTTTCATTACAA  947

seq1  ATATCATTCCAGGTTGGGTGTCTATCATTTCTGCCTTTACTTTCATATCT  998
      |||||||| |||||||||||||||||||||||||| |||||||||||| |
seq2  ATATCATT-CAGGTTGGGTGTCTATCATTTCTGCC-TTACTTTCATAT-T  994

seq1  TGGGATTCCTTTTCCCATTTAACTCATCCCTTAGTTTTTGATCAAATTAG  1048
      ||||| ||||||| ||| ||||||||| ||||   |||||||||| ||||
seq2  TGGGA-TCCTTTTTCCA-TTAACTCATTCCTTTAGTTTTGATCAATTTAG  1042

seq1  GAAGAGTATCTACTGTTATTCAATCAGCTTTACCCCAGAGATGCAGGGGT  1098
      |||||||||||||||||| || |||  |||  || ||   ||||  ||||
seq2  GAAGAGTATCTACTGTTAATCCATCGCCTTATCCTCAAGAATGCCAGGGT  1092

seq1  GGTCCAATATTACAA  1113
      ||||||   ||||||
seq2  GGTCCA--TTTACAA  1105