BAC Information

Click to search

BAC

Clone NameB6Ng01-061F11
Chromosome6 (Build37)
Map Location 94,635,714 - 94,636,825
singlet/doubletsinglet
Overlap geneLrig1
Upstream geneMagi1, LOC100043262, LOC665856, Slc25a26
Downstream geneLOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912, Suclg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061F11.bB6Ng01-061F11.g
ACCDH882047DH882048
length1,2011,101
definitionDH882047|Mus musculus domesticus DNA, BAC clone: B6Ng01-061F11, 5' end.DH882048|Mus musculus domesticus DNA, BAC clone: B6Ng01-061F11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtacccatttttttaatagggttatatggtt
ctctggaatctaacttaatgagttttttgtatatattggatattagccct
ctattggatgtaggattgttaaagatcttttcccaatctgttggttgcca
ttttgtcctattgacaatgtcctttgccttacagaagctttgcaacttta
tgaggtcccatttgtcaattcttgatcttaagaatctattggtgttctgt
tcagaaaaatttcccctgtgcccatgtgctcaaggctctttcccactttc
tcttctattcgtttcattgtatctggtttatgattccttgatccacttgg
acttgagctttgtacaaggaaataagaatggattgatttacattcttcta
aatgctaaccccagttgaactagcaccatttgttgaaaatgcagtcattt
tttccactggattgttttaggtcctttgtcaaagatcaagtgaccatagg
tgtgtggtttcagttctattccattgatctacctgcctgatactgtacca
ataccatgttttttgttttgtttttgtttttcacaattgctctgtagtac
agcttgaggtcagggatggtgattccaccagaagttcttttattgttgag
aatagttttgttatcctgggtttttttgttattccagatgaatttgcaaa
ttgttctaactctgaagagttgagttggaattttgatggagattgcattg
aatctgtagattgctttccaaaaaatggccatttttactatattaatcct
gccaatccatgagcattggagagctttccatcttctgacctcttcttcga
tttctttcttcagagacttgaagtttgtatcatatagatctttcgcttgc
ttagttagtcacaccaaggtattttatattatttgtgactattgtgaagg
tgttgttccctaatttcttctcacctttttatcctttgtgtagaggaaga
ccattgatttgtttgagtaattttatatccagctacttcactgagtgtta
tcagtttaggagttctctggttgattttggggtcacttagatacttcatt
catctcacaataggatatttgactctctcttcattgaattccttgaatcc
tttgtgcatgtcggccagaatctcagactattagaaggggggaatgccca
g
gaattccaagttcttcctctatttggagctgatgtctcagaacacttgtt
ctgtagagtcatcagtgaacgttacgtctgggagttgtatgttgggaaac
ggcgttctttttagatggagaagaaatataaacgcatacatagagttaca
gtgcagttggaaaagtgtagtcagagttaaaaaaaaaaaaaaacacaaac
aagctaacatttaaaccagcagagtgattggccatgcgattgtgactctt
caaatggaatgtccatatttggatgcagtaccacagctaacttacttact
gggccccctgttcttcgttttgggggccgctgacatttcagaaatatcac
aggcagaatcattagccacagcaagtgtgacttcggagtttgagttccct
aaacatttgtgctccttacgtcagttcagcttctgtttgccagtaaaggc
cctagagcatccatggttcggactctgtgagaaaaactcactatcatctg
tgagcttcttgtcacaggctgtggttgggagataaaacagcctgtgatct
ctgattaagagtggcacccctggaacgtggccttgtttgagtgactttgg
acagtttattttctctttgcctccttttttttttttttttcttaaatgag
aatgactgaagttcccaccttattgagatcgtttaaggacaaatgcctga
cacgtggttgaagccacatgagttgtaaccgtttatgtttttatagcagg
atatatgtgttaactaatttgaaatattctgttgaaatatatcatggatg
ttttatacatcaagtccagtgttggtagaggactggtcagggcctatccg
tagctgaggttggaagtctagtctgcttgcacatgatcgtaatagaaaaa
acgctgtaagacagttcctggctcttgtagtattttcaggtctgagttcc
tgaggccagtcactggcccttctgctctcgagtggcctgaataccccgtt
ttggcaaccagttggggcttattagggtgttaaagtgtgatttggagtga
gcttcggactgctcttggcctttgctcctttgggagggagggtgagcagg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_94635714_94636825
seq2: B6Ng01-061F11.g_70_1170 (reverse)

seq1  GCCTGCTACCACCTCCTCACCAAAGAGGCAAA-GCACAGAGCAGTCCAGA  49
      ||||||| |  |||||   ||||||  ||||| ||  |||||||||| ||
seq2  GCCTGCT-CACCCTCCCTCCCAAAGGAGCAAAGGCCAAGAGCAGTCC-GA  48

seq1  AGCATACACTCCAAAATCACACTTTAGACACCACTAATAAAGCACCAACT  99
      |||   |||||| ||||||||||||| ||||| ||||| |||| ||||||
seq2  AGC--TCACTCC-AAATCACACTTTA-ACACC-CTAAT-AAGCCCCAACT  92

seq1  GTGTGCCAAAACGGGGTAATTCAGGCCACTCGAGAGCAGAAGGGGCCAGT  149
      |  |||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  GGTTGCCAAAACGGGGT-ATTCAGGCCACTCGAGAGCAGAA-GGGCCAGT  140

seq1  GACTGGCCTCAGGGAACTCAGACCTGAAAATACTACAAGGGCCAGGAACT  199
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  GACTGGCCTCA-GGAACTCAGACCTGAAAATACTACAAGAGCCAGGAACT  189

seq1  GTCTTACAGCGTTTTTTTCTATTACGATCATGTGCAAGCAGACTAGACTT  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACAGCG-TTTTTTCTATTACGATCATGTGCAAGCAGACTAGACTT  238

seq1  CCAACCTCAGCTACGGATAGGCCCTGACCAGTCCTCTACCAACACTGGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTCAGCTACGGATAGGCCCTGACCAGTCCTCTACCAACACTGGAC  288

seq1  TTGATGTATAAAACATCCATGATATATTTCAACAGAATATTTCAAATTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTATAAAACATCCATGATATATTTCAACAGAATATTTCAAATTAG  338

seq1  TTAACACATATATCCTGCTATAAAAACATAAACGGTTACAACTCATGTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACATATATCCTGCTATAAAAACATAAACGGTTACAACTCATGTGG  388

seq1  CTTCAACCACGTGTCAGGCATTTGTCCTTAAACGATCTCAATAAGGTGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCACGTGTCAGGCATTTGTCCTTAAACGATCTCAATAAGGTGGG  438

seq1  AACTTCAGTCATTCTCATTTAAGAAAAAAAAAAAAAAAAGGAGGCAAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGTCATTCTCATTTAAGAAAAAAAAAAAAAAAAGGAGGCAAAGA  488

seq1  GAAAATAAACTGTCCAAAGTCACTCAAACAAGGCCACGTTCCAGGGGTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAACTGTCCAAAGTCACTCAAACAAGGCCACGTTCCAGGGGTGC  538

seq1  CACTCTTAATCAGAGATCACAGGCTGTTTTATCTCCCAACCACAGCCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTAATCAGAGATCACAGGCTGTTTTATCTCCCAACCACAGCCTGT  588

seq1  GACAAGAAGCTCACAGATGATAGTGAGTTTTTCTCACAGAGTCCGAACCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAGCTCACAGATGATAGTGAGTTTTTCTCACAGAGTCCGAACCA  638

seq1  TGGATGCTCTAGGGCCTTTACTGGCAAACAGAAGCTGAACTGACGTAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTCTAGGGCCTTTACTGGCAAACAGAAGCTGAACTGACGTAAGG  688

seq1  AGCACAAATGTTTAGGGAACTCAAACTCCGAAGTCACACTTGCTGTGGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAATGTTTAGGGAACTCAAACTCCGAAGTCACACTTGCTGTGGCT  738

seq1  AATGATTCTGCCTGTGATATTTCTGAAATGTCAGCGGCCCCCAAAACGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTCTGCCTGTGATATTTCTGAAATGTCAGCGGCCCCCAAAACGAA  788

seq1  GAACAGGGGGCCCAGTAAGTAAGTTAGCTGTGGTACTGCATCCAAATATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGGGCCCAGTAAGTAAGTTAGCTGTGGTACTGCATCCAAATATG  838

seq1  GACATTCCATTTGAAGAGTCACAATCGCATGGCCAATCACTCTGCTGGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCCATTTGAAGAGTCACAATCGCATGGCCAATCACTCTGCTGGTT  888

seq1  TAAATGTTAGCTTGTTTGTGTTTTTTTTTTTTTTTAACTCTGACTACACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTAGCTTGTTTGTGTTTTTTTTTTTTTTTAACTCTGACTACACT  938

seq1  TTTCCAACTGCACTGTAACTCTATGTATGCGTTTATATTTCTTCTCCATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACTGCACTGTAACTCTATGTATGCGTTTATATTTCTTCTCCATC  988

seq1  TAAAAAGAACGCCGTTTCCCAACATACAACTCCCAGACGTAACGTTCACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAACGCCGTTTCCCAACATACAACTCCCAGACGTAACGTTCACT  1038

seq1  GATGACTCTACAGAACAAGTGTTCTGAGACATCAGCTCCAAATAGAGGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTCTACAGAACAAGTGTTCTGAGACATCAGCTCCAAATAGAGGAA  1088

seq1  GAACTTGGAATTC  1112
      |||||||||||||
seq2  GAACTTGGAATTC  1101