BAC Information

Click to search

BAC

Clone NameB6Ng01-061F13
Chromosome6 (Build37)
Map Location 125,821,361 - 125,983,153
singlet/doubletdoublet
Overlap geneTmem16b
Upstream geneCd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf
Downstream geneNtf3, LOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061F13.bB6Ng01-061F13.g
ACCDH882051DH882052
length7521,095
definitionDH882051|Mus musculus domesticus DNA, BAC clone: B6Ng01-061F13, 5' end.DH882052|Mus musculus domesticus DNA, BAC clone: B6Ng01-061F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,821,361 - 125,822,112)(125,982,037 - 125,983,153)
sequence
gaattcattttcccttttcccaacctgctgtccttgccagagtccattga
tagaatctacttcagatgcctcctccagcagaaagcattcctctctggat
gcccacagcttttgggctatgttgttcctaagaccatgattgcttcatgc
tttatatgatgaacagctcactagcaaatccatctaagctagaccacagt
gtctgaagggctttgtttagtgcagatattttagtgtggatcgggtatct
ctgaaaagttagaagctgactggtgcttgctcagaacaggagagatttct
tgtaagaaagtgagagtagggcttatgtaagttgggtgggggagtatcga
gagtgatgactaagctccaggcagaaacaatctgcacaggcaagatgagg
cttattagaaaaactacaaacccttgtgtaatgcagcttcccattcaact
tcatggagagggtgcttacttgggctcatggtttcagaggtttaaaccca
ggggctgctccattgctttggagtaagagtgcgtagtggaggcttctcct
ctcatggtgatcaaggaagcaaagaggaaaggatggattaggggatctgg
ggacaagatctaagtgattttaccccggggacccatgaccacgtgtatca
caatttctatcataactcttctcctatatttctatcataatttaatagat
cataacgttgggaacccatcagtggacctactcattgaagaaatgagtcc
cc
gaattcatcacagaactctgaagcctggtccttcagaggaaaccacccaa
tacaggctgagagtcccttatctgaacactcggtgctagaaggattacag
atttcagaacttcttcctattttggaatacttgcttatatttaaggcatc
taggggatgggcctgaagcaaaaatgtgaaattcattgacggttcaaata
ttcctttcacacataaacataagatagttttatacactacatttaaacca
ctgcattcatgtaacgatgttttgtagtgtttaattttccacttgtgatg
cagtatgaacacgaagcctttcagacttctttgagcctcatgttttggat
ttgtgggttacaaatgcagacctacagtaactattcttcgctttgctaaa
ggtgacttataactttggtcagggcacacagacaaaccttcccagtcctc
ctggcttccagagaaggtttcagaacacttaaattccaggcccatgatgc
cgatgcccaccagaggtgccaggtactggcagccacaggggcctgctcta
ggtaaatggcacaagacaggagagactctgactggtggaggacaccctga
ggcctgggaagtacagtttttctctagtccatccccatcctgccatatga
ccccaacacctgacagtcttccctgggcagcctcagtttcccagcaagtc
catgccggccccaaaaggacatgaaattttaacgtcaggcatatcagttg
gagaaactcacccctcctccgtttctgctttattgtccttgagctttaat
gttatttttgaagagttgcttctgagttcttccagacagacagactttca
ctcatgagacaactaggtcatctaacaggtcacatggatttagggtgcct
ctgccttctacatgagtcaggtacatatgtttctaaacttcagcaatcta
atcagaaaagcaaccatacatcatgtatgtacctgctcttctctcaataa
aaaaatgtgttcggtgtgcatgtcactcagtgtaaaagaagaataagtaa
gatttaatgaatacatagtaattgatttctgaagttccatcccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_125821361_125822112
seq2: B6Ng01-061F13.b_44_795

seq1  GAATTCATTTTCCCTTTTCCCAACCTGCTGTCCTTGCCAGAGTCCATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCCCTTTTCCCAACCTGCTGTCCTTGCCAGAGTCCATTGA  50

seq1  TAGAATCTACTTCAGATGCCTCCTCCAGCAGAAAGCATTCCTCTCTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTACTTCAGATGCCTCCTCCAGCAGAAAGCATTCCTCTCTGGAT  100

seq1  GCCCACAGCTTTTGGGCTATGTTGTTCCTAAGACCATGATTGCTTCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAGCTTTTGGGCTATGTTGTTCCTAAGACCATGATTGCTTCATGC  150

seq1  TTTATATGATGAACAGCTCACTAGCAAATCCATCTAAGCTAGACCACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGATGAACAGCTCACTAGCAAATCCATCTAAGCTAGACCACAGT  200

seq1  GTCTGAAGGGCTTTGTTTAGTGCAGATATTTTAGTGTGGATCGGGTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGGGCTTTGTTTAGTGCAGATATTTTAGTGTGGATCGGGTATCT  250

seq1  CTGAAAAGTTAGAAGCTGACTGGTGCTTGCTCAGAACAGGAGAGATTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGTTAGAAGCTGACTGGTGCTTGCTCAGAACAGGAGAGATTTCT  300

seq1  TGTAAGAAAGTGAGAGTAGGGCTTATGTAAGTTGGGTGGGGGAGTATCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAAGTGAGAGTAGGGCTTATGTAAGTTGGGTGGGGGAGTATCGA  350

seq1  GAGTGATGACTAAGCTCCAGGCAGAAACAATCTGCACAGGCAAGATGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATGACTAAGCTCCAGGCAGAAACAATCTGCACAGGCAAGATGAGG  400

seq1  CTTATTAGAGAAACTACAAACCCTTGTGTAAGTCAGCTTCCCATTCAACT  450
      ||||||||| |||||||||||||||||||||  |||||||||||||||||
seq2  CTTATTAGAAAAACTACAAACCCTTGTGTAATGCAGCTTCCCATTCAACT  450

seq1  TCATGGAGAGGGCGCTTACTTGGGCTCATGGTTTCAGAGGTTTAAACCCA  500
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCATGGAGAGGGTGCTTACTTGGGCTCATGGTTTCAGAGGTTTAAACCCA  500

seq1  GGGGCTGCTCCATTGCTTTGGAGTAAGAGTGCGTAGTGGAGGCTTCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGCTCCATTGCTTTGGAGTAAGAGTGCGTAGTGGAGGCTTCTCCT  550

seq1  CTCATGGTGATCAAGGAAGCAAAGAGGAAAGGATGGATTAGGGGATCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGTGATCAAGGAAGCAAAGAGGAAAGGATGGATTAGGGGATCTGG  600

seq1  GGACAAGATCCTTGTGATTTTACCCCAGGGACCCATTTCCTCCTGTATCA  650
      ||||||||||   ||||||||||||| |||||||||  || | |||||||
seq2  GGACAAGATCTAAGTGATTTTACCCCGGGGACCCATGACCACGTGTATCA  650

seq1  CAATTTCTATCATAACTCTTCTCCTATATTTCTATCATAATTCAATAGAT  700
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAATTTCTATCATAACTCTTCTCCTATATTTCTATCATAATTTAATAGAT  700

seq1  CATAACATTGTGAACCCATCAGTGGACCAACTCATTGATGAGATGAGTCC  750
      |||||| ||| ||||||||||||||||| ||||||||| || ||||||||
seq2  CATAACGTTGGGAACCCATCAGTGGACCTACTCATTGAAGAAATGAGTCC  750

seq1  CC  752
      ||
seq2  CC  752

seq1: chr6_125982037_125983153
seq2: B6Ng01-061F13.g_68_1162 (reverse)

seq1  TTGGGTGTGGAAGCTTCTAGAAATCACATTAACCTATGTTATTTCATTAA  50
      |||||  ||||| |||| |||||||| ||||  ||||||   ||||||||
seq2  TTGGG-ATGGAA-CTTC-AGAAATCA-ATTA--CTATGT--ATTCATTAA  42

seq1  ATTCTCACTGTATCTTCTTTTAACACTGAGTGTACATGCACACCTGTACA  100
      | ||| |||   ||||||||| |||||||||| ||||||||||| | |||
seq2  A-TCTTACTTATTCTTCTTTT-ACACTGAGTG-ACATGCACACC-GAACA  88

seq1  CATGTTTTTTATGCTGGGGCTGGAGGGCAGGTACATACATGGTGTACTGG  150
      ||| ||||||||  || |   | || ||||||||||||||| |||| |||
seq2  CAT-TTTTTTAT--TGAG--AGAAGAGCAGGTACATACATGATGTA-TGG  132

seq1  TTGCTTTTTCTGATTTAGATTGCTGAGGTTTAGAGACATGATGTACCTGA  200
      |||| |||||||| |||||||||||| ||||||| |||| ||||||||||
seq2  TTGC-TTTTCTGA-TTAGATTGCTGAAGTTTAGAAACAT-ATGTACCTGA  179

seq1  CTCATGTAGAAGGCAGAGGCACCCTAATGCCATGTGACCTGTTTAGATGA  250
      |||||||||||||||||||||||||||  |||||||||||| ||||||||
seq2  CTCATGTAGAAGGCAGAGGCACCCTAAATCCATGTGACCTG-TTAGATGA  228

seq1  CCTAGTTGTCTCATGAGTGAAAGTCTGTCTGTCTTGGAAG-ACTCAGAAG  299
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  CCTAGTTGTCTCATGAGTGAAAGTCTGTCTGTC-TGGAAGAACTCAGAAG  277

seq1  CAACTCTTCAAAAATAACATTAAAGCTCAAGGACAATAAAGCAGAAACGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTTCAAAAATAACATTAAAGCTCAAGGACAATAAAGCAGAAACGG  327

seq1  AGGAGGGGTGAGTTTCTCCAACTGATATGCCTGACGTTAAAATTTCATGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGTGAGTTTCTCCAACTGATATGCCTGACGTTAAAATTTCATGT  377

seq1  CCTTTTGGGGCCGGCATGGACTTGCTGGGAAACTGAGGCTGCCCAGGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGGGGCCGGCATGGACTTGCTGGGAAACTGAGGCTGCCCAGGGAA  427

seq1  GACTGTCAGGTGTTGGGGTCATATGGCAGGATGGGGATGGACTAGAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCAGGTGTTGGGGTCATATGGCAGGATGGGGATGGACTAGAGAAA  477

seq1  AACTGTACTTCCCAGGCCTCAGGGTGTCCTCCACCAGTCAGAGTCTCTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTACTTCCCAGGCCTCAGGGTGTCCTCCACCAGTCAGAGTCTCTCC  527

seq1  TGTCTTGTGCCATTTACCTAGAGCAGGCCCCTGTGGCTGCCAGTACCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGTGCCATTTACCTAGAGCAGGCCCCTGTGGCTGCCAGTACCTGG  577

seq1  CACCTCTGGTGGGCATCGGCATCATGGGCCTGGAATTTAAGTGTTCTGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGGTGGGCATCGGCATCATGGGCCTGGAATTTAAGTGTTCTGAA  627

seq1  ACCTTCTCTGGAAGCCAGGAGGACTGGGAAGGTTTGTCTGTGTGCCCTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTCTGGAAGCCAGGAGGACTGGGAAGGTTTGTCTGTGTGCCCTGA  677

seq1  CCAAAGTTATAAGTCACCTTTAGCAAAGCGAAGAATAGTTACTGTAGGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTATAAGTCACCTTTAGCAAAGCGAAGAATAGTTACTGTAGGTC  727

seq1  TGCATTTGTAACCCACAAATCCAAAACATGAGGCTCAAAGAAGTCTGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGTAACCCACAAATCCAAAACATGAGGCTCAAAGAAGTCTGAAA  777

seq1  GGCTTCGTGTTCATACTGCATCACAAGTGGAAAATTAAACACTACAAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCGTGTTCATACTGCATCACAAGTGGAAAATTAAACACTACAAAAC  827

seq1  ATCGTTACATGAATGCAGTGGTTTAAATGTAGTGTATAAAACTATCTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTACATGAATGCAGTGGTTTAAATGTAGTGTATAAAACTATCTTAT  877

seq1  GTTTATGTGTGAAAGGAATATTTGAACCGTCAATGAATTTCACATTTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTGTGAAAGGAATATTTGAACCGTCAATGAATTTCACATTTTTG  927

seq1  CTTCAGGCCCATCCCCTAGATGCCTTAAATATAAGCAAGTATTCCAAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGCCCATCCCCTAGATGCCTTAAATATAAGCAAGTATTCCAAAAT  977

seq1  AGGAAGAAGTTCTGAAATCTGTAATCCTTCTAGCACCGAGTGTTCAGATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAGTTCTGAAATCTGTAATCCTTCTAGCACCGAGTGTTCAGATA  1027

seq1  AGGGACTCTCAGCCTGTATTGGGTGGTTTCCTCTGAAGGACCAGGCTTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTCTCAGCCTGTATTGGGTGGTTTCCTCTGAAGGACCAGGCTTCA  1077

seq1  GAGTTCTGTGCTGAATTC  1117
      |||||||||| |||||||
seq2  GAGTTCTGTGATGAATTC  1095