BAC Information

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BAC

Clone NameB6Ng01-061H17
Chromosome6 (Build37)4 (Build37)
Map Location 18,835,442 - 18,835,96865,572,943 - 65,574,043
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061H17.bB6Ng01-061H17.g
ACCDH882146DH882147
length1,0231,094
definitionDH882146|Mus musculus domesticus DNA, BAC clone: B6Ng01-061H17, 5' end.DH882147|Mus musculus domesticus DNA, BAC clone: B6Ng01-061H17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(65,572,943 - 65,574,043)
sequence
gaattgtttgttcagttctgagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaaactttggaatttcat
taggtcccatttgtcgattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgattcgca
ttcttctacacgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctggatcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttattacaattgct
ctgtagtaaagctttaggtctggcatggtgatcccgccagaagttctttt
atccttgagaagactttttgctatcctaggttttttgttattccagacaa
atttgcaaattgctccttccaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttctcagagatttgaagttttatcatacag
atctttcacctccttagttagagtcacaccagatattttatattatttgt
gactattgagaggtgttgtttcctaatttctttctcagcctgttaattct
ttgtatagagaaaggtcatgact
gaattctctgttccccaagaccagagttagccagatttgctcgtattcga
atatttgctgcttaagtgtatgcatcattcagccgttgcgccgtcttgtg
gagcttgttatctttttatgagtaatgagtggacactacgaagtcaggga
ctattgcatctctgcttgcttgcagtcctgatgcccagcaggagttccat
aaagagtcagaaggaacagtcgggtacacagggtaagaatgtggactcta
aatcaattcaaaccaacatttcatcccctggtactgccacttaatttact
gtgtgcctttatctggttaaatatagaagttttacgcacaatttcataga
ggtgaaaagcagaggtaataaaaatagagtttgggcttgtaaaatatttt
ttttatgtgggtagactgaataatctgtaatgccttctctagtttaagta
cccgtgtctataagtctagaaaccagacaaacaggaatcagattcccata
gcaaccaggccataatactgcatcagtgccagtgagagtgcttttatact
cagtgagactctggatcaacattctaagactgcgcaaacataccttctgt
ctacccttcctcctttcccctgtatcatatcccagaaagactgtcaactc
acctgagaatcttttcaggggcttgctctcctgtcaccagatcatagccc
ctctccagtgttgtgtaaggccaaggtctgaggaaataacgcatggagag
gaaagcaagaagacaaggcatagcattagtctgaagtaagcagcagccaa
attgttcaacagaagctacccaacaacattccatagaactacctgctgca
ggcgactgtctacactgtaaaggaatgtcttaggcactttacagaggact
cacattttcattcagttcacttgtctgttctgagttcacgttcaaaaccc
aattcctcctccgcataccttactgatatttcctgtttcgtgtacgagtg
aagcatcagtgcttgaagcttcatcagtcatgtgccatagtactaaggtg
tgattcagcagaagaaataggtttactttcactggaaagtatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-061H17.b_47_573 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGATCGAGAATCGACAAATGGGACCTAATGAAATTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAA-AA  499

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      |||||||||||||||||||||| |||||
seq2  ATGGGGCTCAGAACTGAACAAACAATTC  527

seq1: chr4_65572943_65574043
seq2: B6Ng01-061H17.g_71_1164

seq1  GAATTCTCTGTTCCCCAAGACCAGAGTTAGCCAGATTTGCTCGTATTCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTCCCCAAGACCAGAGTTAGCCAGATTTGCTCGTATTCGA  50

seq1  ATATTTGCTGCTTAAGTGTATGCATCATTCAGCCGTTGCGCCGTCTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCTGCTTAAGTGTATGCATCATTCAGCCGTTGCGCCGTCTTGTG  100

seq1  GAGCTTGTTATCTTTTTATGAGTAATGAGTGGACACTACGAAGTCAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGTTATCTTTTTATGAGTAATGAGTGGACACTACGAAGTCAGGGA  150

seq1  CTATTGCATCTCTGCTTGCTTGCAGTCCTGATGCCCAGCAGGAGTTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCATCTCTGCTTGCTTGCAGTCCTGATGCCCAGCAGGAGTTCCAT  200

seq1  AAAGAGTCAGAAGGAACAGTCGGGTACACAGGGTAAGAATGTGGACTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCAGAAGGAACAGTCGGGTACACAGGGTAAGAATGTGGACTCTA  250

seq1  AATCAATTCAAACCAACATTTCATCCCCTGGTACTGCCACTTAATTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATTCAAACCAACATTTCATCCCCTGGTACTGCCACTTAATTTACT  300

seq1  GTGTGCCTTTATCTGGTTAAATATAGAAGTTTTACGCACAATTTCATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCTTTATCTGGTTAAATATAGAAGTTTTACGCACAATTTCATAGA  350

seq1  GGTGAAAAGCAGAGGTAATAAAAATAGAGTTTGGGCTTGTAAAATATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAAGCAGAGGTAATAAAAATAGAGTTTGGGCTTGTAAAATATTTT  400

seq1  TTTTATGTGGGTAGACTGAATAATCTGTAATGCCTTCTCTAGTTTAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTGGGTAGACTGAATAATCTGTAATGCCTTCTCTAGTTTAAGTA  450

seq1  CCCGTGTCTATAAGTCTAGAAACCAGACAAACAGGAATCAGATTCCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGTCTATAAGTCTAGAAACCAGACAAACAGGAATCAGATTCCCATA  500

seq1  GCAACCAGGCCATAATACTGCATCAGTGCCAGTGAGAGTGCTTTTATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCAGGCCATAATACTGCATCAGTGCCAGTGAGAGTGCTTTTATACT  550

seq1  CAGTGAGACTCTGGATCAACATTCTAAGACTGCGCAAACATACCTTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGACTCTGGATCAACATTCTAAGACTGCGCAAACATACCTTCTGT  600

seq1  CTACCCTTCCTCCTTTCCCCTGTATCATATCCCAGAAAGACTGTCAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTCCTCCTTTCCCCTGTATCATATCCCAGAAAGACTGTCAACTC  650

seq1  ACCTGAGAATCTTTTCAGGGGCTTGCTCTCCTGTCACCAGATCATAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGAATCTTTTCAGGGGCTTGCTCTCCTGTCACCAGATCATAGCCC  700

seq1  CTCTCCAGTGTTGTGTAAGGCCAAGGTCTGAGGAAATAACGCATGGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGTGTTGTGTAAGGCCAAGGTCTGAGGAAATAACGCATGGAGAG  750

seq1  GAAAGCAAGAAGACAAGGCATAGCATTAGTCTGAAGTAAGCAGCAGCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAGAAGACAAGGCATAGCATTAGTCTGAAGTAAGCAGCAGCCAA  800

seq1  ATTGTTCAACAGAAGCTACCCAACAACATTCCATAGAACTACCTGCTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCAACAGAAGCTACCCAACAACATTCCATAGAACTACCTGCTGCA  850

seq1  GGCGACTGTCTACACTGTAAAGGAATGTCTTAGGCACTTTACAGAGGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACTGTCTACACTGTAAAGGAATGTCTTAGGCACTTTACAGAGGACT  900

seq1  CAACATTTTCATTCAGTTCACTTGTCTGTTTCTGAGTTCACGTTCAAAAA  950
      | |||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  C-ACATTTTCATTCAGTTCACTTGTCTG-TTCTGAGTTCACGTTC-AAAA  947

seq1  CCCAATTCCTCCTCCGCATACCTTACTGATTATTTCCTGTTTCGGTGTAC  1000
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  CCCAATTCCTCCTCCGCATACCTTACTGA-TATTTCCTGTTTC-GTGTAC  995

seq1  GAGTGAAGCATCAGTGCTTGAAGCTTCATCAGTCATGTGCCATAGTACTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAGCATCAGTGCTTGAAGCTTCATCAGTCATGTGCCATAGTACTA  1045

seq1  AAGTGTGATTCAGCAGAAGAAATAGGTTTCACTTTTCACTGGAATGTATG  1100
      | ||||||||||||||||||||||||||| || ||||||||||| |||||
seq2  AGGTGTGATTCAGCAGAAGAAATAGGTTT-AC-TTTCACTGGAAAGTATG  1093

seq1  C  1101
      |
seq2  C  1094