BAC Information

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BAC

Clone NameB6Ng01-061I21
Chromosome6 (Build37)
Map Location 91,368,601 - 91,497,862
singlet/doubletdoublet
Overlap geneLOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3
Upstream geneCcdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a
Downstream geneSlc6a6, Grip2, C130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061I21.bB6Ng01-061I21.g
ACCDH882200DH882201
length6661,019
definitionDH882200|Mus musculus domesticus DNA, BAC clone: B6Ng01-061I21, 5' end.DH882201|Mus musculus domesticus DNA, BAC clone: B6Ng01-061I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,368,601 - 91,369,249)(91,496,844 - 91,497,862)
sequence
gaattcccgtgacctgagcttgcacaggccttgtgcatgcttttacaact
gctgtgggttcatatatgcaactgcccagctgtgcccagaaaacttgtac
tcatctgctgcctctggctcttacaatatttctacaccctcttccataat
gatccttaaactctagcaggaaggggtgtgatatagatgacctacttagg
agtgaacattcaccactctcttgtcctctgtgcctttaccagctgtgtct
ctgtgttaatctctgtctagtgcaaaaagaatgatgagagttgagacatg
cccccaacctatgagcatagtatgacatctttaagagtctgtttaatcct
atgcccctttagagaagtaatagtaggttctcctctaaagtctatgacct
gtctggtcacaggttcttgttcctgataatggtgacagatatagttttca
actagtggagtgtgtcttcaattcaatcagatagtggttggttactcctc
tgctttactgtacccccgcaccggtagcacttttaccatgcctgccactg
tcatggacatggaaaaatcagaagggaacttcaattcctaaattgttcaa
tgaaagatacatctcaatctatggacaaatgaagcatggaatgccactaa
tactcataaaaaaaaa
gaattcatcttccctcttggacattaacaaaaatattttaattttaagta
ggaaggatcacggtccattagaatttctttttttcttgaactagcttata
aaatgctaattgttgaactgggtgtggtggtatccacctttaattccagt
acttgggaggcataaacgcctcaaacctctgagtttgaggtcagcctggt
ctacatagtaagttccaggacagacaggactacatagtgagtcaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccaaagc
aaaccaaagtaaagcaaaaacccaaaccacccctatcataagcaccaagt
taactgctgacttgaggtacagggttaacaacaagctcagctcatgcacc
ccacttctggtcatttttttttctttgaaacaaagttttgctatatagcc
caggctagccttgaatgcagggaactcctatctctatctcccaagttctg
ggattaaaaaaacatgacccaaaaatttggtcatgtttaaagtcaagtca
aggaacaaggtatcacacccttttaggcttataaaaaaggacattttggt
ccagtgggctctaatgctagtcttgtttttgctttagctccttttcctgt
tgctaactcttgaagcgctgagtttctccatctttctgattatctttgga
tttgagtatttccggacattccccacatctgctcccccctttaaggcagg
ggttctcaacctttctaatgctgtgacctttttaatatagttccctcatg
ttgggggtgaccccaatcataaaattatgttcacctctacttcataactg
taattttgctcctgcaaaaaatggaatgtaaaaattatgtcttcctatgt
tctcaggtccctggagacctaaggggaaaaaagttgtttgaccttaaagg
gttgccacccacacttaaaaatccctcccctgaggatttagtctccttgc
ttcgtcaacttccagtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_91368601_91369249
seq2: B6Ng01-061I21.b_92_715

seq1  TTACAACTGCTGTGGGTTCATATATGCAACTGCCCAGCTGTGCCCAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTGCTGTGGGTTCATATATGCAACTGCCCAGCTGTGCCCAGAAA  50

seq1  ACTTGTACTCATCTGCTGCCTCTGGCTCTTACAATATTTCTACACCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTACTCATCTGCTGCCTCTGGCTCTTACAATATTTCTACACCCTCT  100

seq1  TCCATAATGATCCTTAAACTCTAGCAGGAAGGGGTGTGATATAGATGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAATGATCCTTAAACTCTAGCAGGAAGGGGTGTGATATAGATGACC  150

seq1  TACTTAGGAGTGAACATTCACCACTCTCTTGTCCTCTGTGCCTTTACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGGAGTGAACATTCACCACTCTCTTGTCCTCTGTGCCTTTACCAG  200

seq1  CTGTGTCTCTGTGTTAATCTCTGTCTAGTGCAAAAAGAATGATGAGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTCTGTGTTAATCTCTGTCTAGTGCAAAAAGAATGATGAGAGTT  250

seq1  GAGACATGCCCCCAACCTATGAGCATAGTATGACATCTTTAAGAGTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATGCCCCCAACCTATGAGCATAGTATGACATCTTTAAGAGTCTGT  300

seq1  TTAATCCTATGCCCCTTTAGAGAAGTAATAGTAGGTTCTCCTCTAAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCTATGCCCCTTTAGAGAAGTAATAGTAGGTTCTCCTCTAAAGTC  350

seq1  TATGACCTGTCTGGTCACAGGTTCTTGTTCCTGATAATGGTGACAGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCTGTCTGGTCACAGGTTCTTGTTCCTGATAATGGTGACAGATAT  400

seq1  AGTTTTCAACTAGTGGAGTGTGTCTTCAATTCAATCAGATAGTGGTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAACTAGTGGAGTGTGTCTTCAATTCAATCAGATAGTGGTTGGT  450

seq1  TACTCCTCTGCTATTACTGTACCACCGCACCGGTAGGCACATCTTACCAT  500
      |||||||||||| |||||||||| ||||||||||| |||| | |||||||
seq2  TACTCCTCTGCT-TTACTGTACCCCCGCACCGGTA-GCAC-TTTTACCAT  497

seq1  GCCTGCCACTGTCATGGACATGGAAGAAATCAAGAAGGGAAACTTCAAAT  550
      ||||||||||||||||||||||||| ||||| ||||||| |||||| |||
seq2  GCCTGCCACTGTCATGGACATGGAA-AAATC-AGAAGGG-AACTTC-AAT  543

seq1  TCCTAGAATTGGTTACAAATGAAAGCATAGCATACCAAAATCTATGGGAC  600
      ||||| ||||| |    |||||||| ||| |||  |  ||||||| ||||
seq2  TCCTA-AATTGTT---CAATGAAAG-ATA-CAT--CTCAATCTAT-GGAC  584

seq1  AAAATGAAGGCAATGGGAATGCCTACTAAGTACCTACATTAAAAAAAAA  649
       ||||||| |||   |||||||| ||||| |||   ||| |||||||| 
seq2  -AAATGAA-GCA--TGGAATGCC-ACTAA-TAC--TCATAAAAAAAAA-  624

seq1: chr6_91496844_91497862
seq2: B6Ng01-061I21.g_69_1087 (reverse)

seq1  AAGACTGGAAGATGATCGAAGCAAGAGGACTAAATCCTCAGGGTAGTGAT  50
      ||||||||||| ||| |||||||||  |||||||||||||||| || |||
seq2  AAGACTGGAAGTTGA-CGAAGCAAGGAGACTAAATCCTCAGGGGAGGGAT  49

seq1  TCTGAGCTGTGAGTTGCAACCCCTCTGAGGATCAAACAACTCTTTTACCC  100
      | | |  |||| || |||| |||| | ||| |||||||||| |||| |||
seq2  TTTTAAGTGTGGGTGGCAA-CCCTTTAAGG-TCAAACAACTTTTTTCCCC  97

seq1  TTAGGGTCTCAGGTGACCTGAGAACATAGGAAGACATAGATATTTACATT  150
      ||| ||||||  | |||||||||||||||||||||||| || ||||||||
seq2  TTA-GGTCTCCAGGGACCTGAGAACATAGGAAGACATA-ATTTTTACATT  145

seq1  ACAATTCATAGCAGGAGCAAAATTACAGTTATGAAGTAGAGGTGAACATA  200
       | |||  | ||||||||||||||||||||||||||||||||||||||||
seq2  -CCATTTTTTGCAGGAGCAAAATTACAGTTATGAAGTAGAGGTGAACATA  194

seq1  ATTTTATGATT-GGGTCA-CCACAACATGA-GGAACTATA-TAAAAAGGT  246
      ||||||||||| |||||| || |||||||| ||||||||| |||||||||
seq2  ATTTTATGATTGGGGTCACCCCCAACATGAGGGAACTATATTAAAAAGGT  244

seq1  CACAGCATTAGAAAGGTTGAGAACCACTGCCTTAAA-GGGGGAGCAGATG  295
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  CACAGCATTAGAAAGGTTGAGAACCCCTGCCTTAAAGGGGGGAGCAGATG  294

seq1  T-GTGAATGTCAGGAAATACTCAAATCCAAAGATAATCAGAAAGATGGAG  344
      | | ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAATGTCCGGAAATACTCAAATCCAAAGATAATCAGAAAGATGGAG  344

seq1  AAACTCAGCGCTTCAAGAGTTAGCAACAGGAAAAGGAGCTAAAGCAAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGCGCTTCAAGAGTTAGCAACAGGAAAAGGAGCTAAAGCAAAAA  394

seq1  CAAGACTAGCATTAGAGCACACTGGACCAAAATGTCCTCTTTTATAAGCC  444
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  CAAGACTAGCATTAGAGCCCACTGGACCAAAATGTCCTTTTTTATAAGCC  444

seq1  TAAAAGGGTGTGATACCTTGTTCCTTGACTTGACTTTAAACATGACCAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGTGTGATACCTTGTTCCTTGACTTGACTTTAAACATGACCAAA  494

seq1  TTTCTGGGTCATGTTTCTCTAATCCCAGAACTTGGGAGATAGAGATAGGA  544
      ||| |||||||||||| | |||||||||||||||||||||||||||||||
seq2  TTTTTGGGTCATGTTTTTTTAATCCCAGAACTTGGGAGATAGAGATAGGA  544

seq1  GTTCCCTGCATTCAAGGCTAGCCTGGGCTATATAGCAAAACTCTGTCTCA  594
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  GTTCCCTGCATTCAAGGCTAGCCTGGGCTATATAGCAAAACTTTGTTTCA  594

seq1  AAGAAAAAAAAATGACCAGAAGTGGGGTGCATGAGCTGAGCTTGTTGTTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAAATGACCAGAAGTGGGGTGCATGAGCTGAGCTTGTTGTTA  644

seq1  ACACTGTACCTCAAGTCAGCAGTTAACTTGGTGCTTATGATAGTGGTGGT  694
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCCTGTACCTCAAGTCAGCAGTTAACTTGGTGCTTATGATAGGGGTGGT  694

seq1  TTGGGTTTTTGCTTTACTTTGGTTTGCTTTGGTTTTTTTTTTTTTTTTTT  744
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGGGTTTTTGCTTTACTTTGGTTTGCTTTGGGTTTTTTTTTTTTTTTTT  744

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTCACTATGTAGTCCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTCACTATGTAGTCCT  794

seq1  GTCTGTCCTGGAACTTACTATGTAGACCAGGCTGACCTCAAACTCAGAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCCTGGAACTTACTATGTAGACCAGGCTGACCTCAAACTCAGAGG  844

seq1  TTTGAGGCGTTTATGCCTCCCAAGTACTGGAATTAAAGGTGGATACCACC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCGTTTATGCCTCCCAAGTACTGGAATTAAAGGTGGATACCACC  894

seq1  ACACCCAGTTCAACAATTAGCATTTTATAAGCTAGTTCAAGAAAAAAAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAGTTCAACAATTAGCATTTTATAAGCTAGTTCAAGAAAAAAAGA  944

seq1  AATTCTAATGGACCGTGATCCTTCCTACTTAAAATTAAAATATTTTTGTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAATGGACCGTGATCCTTCCTACTTAAAATTAAAATATTTTTGTT  994

seq1  AATGTCCAAGAGGGAAGATGAATTC  1019
      |||||||||||||||||||||||||
seq2  AATGTCCAAGAGGGAAGATGAATTC  1019