BAC Information

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BAC

Clone NameB6Ng01-061L14
Chromosome6 (Build37)
Map Location 29,530,551 - 29,733,385
singlet/doubletdoublet
Overlap geneTnpo3, Tspan33, Smo, 4631427C17Rik
Upstream geneSnd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5
Downstream geneD330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061L14.bB6Ng01-061L14.g
ACCDH882322DH882323
length1,1141,147
definitionDH882322|Mus musculus domesticus DNA, BAC clone: B6Ng01-061L14, 5' end.DH882323|Mus musculus domesticus DNA, BAC clone: B6Ng01-061L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,530,551 - 29,531,674)(29,732,221 - 29,733,385)
sequence
gaattctatgacagccagggttatacacagaaaccctgtcactcactcac
tcaatcaatcaatcaatcaatcaatctgggtggagaagaggcataacata
gaaatgaaaaagtctcccaatttctcgtttataatgacacatgctagcat
ataagaacataaatatttgaaattttgaagaaaagaacaatggacctaaa
accacatctacctaatgaattaataaaaaatgaaaactacttcttgctgg
gtatcataaaatatactaataattcaagcactttaggaggatgaggcaat
aggattactacaaatccaatatcttcatgggatagagtaagttccacgtt
agctttgactttaagcaagtctcagagctggtaagtggctctgtagataa
aggtatctggctagcctaacaacttgagtttgattcctggaacccacata
atagagataacaacccctccataactgtcttctgacatgcacatacatat
aataactgatttttaaatgcaattttataaattgtagtgctcttaatcct
agcacttagaaggtggaggtagaagatcatgcattcaagttcaaatgagt
tcaaatacagtaataacaaaacatgcaaaaacctgttcattctctgtgta
cattttctttggaaattacgaggaagttcaaaaagtaagttatcaaccca
aaaaggtagtaaatggaaatctaaggatcataactggggaacaaatctaa
aaaatttgtaagaataagaataaatcagaggggtccaaggaggaaccaac
atggtagcataggctccaggtcagcactcagcaggtgagagcagaaggat
cttgaatttaagataaccagaccacacagagagctgtaagccagtctgct
acagagttgagactgtctcaaaaaaaattataggaaagtacaagaaggta
aactgcagggcttttattttaccatagaactgagagcgcctgtaatttag
tgaagccatactttaagtctttctcgattaccacaacaaaacggactctg
aagtgggaagctaacattaaatcatctcaattttagaatgttttaaggat
aattttatgtgtac
gaattccaaaccttaaaaatcagactactctctgacttactgatgcttca
ggtcagatcagaatctagccataagtacaagttacctaccagtttgtttt
aaataagccttatgtaagtaagtttggcttgcatgaacaagtcctaaaag
gctaatggcttgcaaatatgagtatgaatttctggacttttaaagctgta
acaagggaatacaataaaggttcagctacactgtgaaagcaactagtttc
caggggtgatatacctcagtcaaggctgacctccccaagctacaagtctg
ctttcatgactgcccatagcaaacgaaattatatttacttctttccctgg
gacacttcctatactcttttctagggcaagaatggtaacttactgatact
atcaccttaggactaagtgatgtttagcacacaataaataaatgaattta
cataaaacagctcacagttcattagagaagcaagagttataacaaagccc
tgcaggtcacacaccacaggggcatggtacaagcctttatccaaggtctg
gtatatagaccctttatcccaaactggcctcaagctcactctgtaactca
ggctggccttgaatttatagccattctcctgcttcatcctcctaagtgct
gagattatagacatgagataacatattctgtcctttattcctaaaaataa
tgtgaaataatgtactaaaaaaaaaaaaaaaactattctacttttgtctc
caaggcataaagtaatctggaactcaattaagctttaactaatacagcct
tgttaaagacaattttctatttatgctcgaggaaaagaagcccctcttta
agcctagagcatataatgtcaacttcaaaagacagataacacacaattac
catgaaaaaaatagagcatataatgtcaacttcaaaaggcggttacacac
cattaccataaaaaaaaatttgtctacacttttatcactgtactcatctt
ggtaatgccttaaagagaaaataaaattgtttggaaaaagactacaggct
accttcttccaactggtagggacattacagatgagttctctgaggtgact
actgccaggctttatcggaaaccactgtaagctcgagtttcttcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29530551_29531674
seq2: B6Ng01-061L14.b_45_1158

seq1  GAATTCTATGACAGCCAGGGTTATACAGAGAAACCCTGTCACTCACTCAC  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCTATGACAGCCAGGGTTATACACAGAAACCCTGTCACTCACTCAC  50

seq1  TCAATCAATCAATCAATCAATCAATCTGGGTGGAGAAGAGGCATAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAATCAATCAATCAATCAATCTGGGTGGAGAAGAGGCATAACATA  100

seq1  GAAATGAAAAAGTCTCCCAATTTCTCGTTTATAATGACACATGCTAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAAAAGTCTCCCAATTTCTCGTTTATAATGACACATGCTAGCAT  150

seq1  ATAAGAACATAAATATTTGAAATTTTGAAGAAAAGAACAATGGACCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAACATAAATATTTGAAATTTTGAAGAAAAGAACAATGGACCTAAA  200

seq1  ACCACATCTACCTAATGAATTAATAAAAAATGAAAACTACTTCTTGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATCTACCTAATGAATTAATAAAAAATGAAAACTACTTCTTGCTGG  250

seq1  GTATCATAAAATATACTAATAATTCAAGCACTTTAGGAGGATGAGGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATAAAATATACTAATAATTCAAGCACTTTAGGAGGATGAGGCAAT  300

seq1  AGGATTACTACAAATCCAATATCTTCATGGGATAGAGTAAGTTCCACGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTACTACAAATCCAATATCTTCATGGGATAGAGTAAGTTCCACGTT  350

seq1  AGCTTTGACTTTAAGCAAGTCTCAGAGCTGGTAAGTGGCTCTGTAGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGACTTTAAGCAAGTCTCAGAGCTGGTAAGTGGCTCTGTAGATAA  400

seq1  AGGTATCTGGCTAGCCTAACAACTTGAGTTTGATTCCTGGAACCCACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCTGGCTAGCCTAACAACTTGAGTTTGATTCCTGGAACCCACATA  450

seq1  ATAGAGATAACAACCCCTCCATAACTGTCTTCTGACATGCACATACATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATAACAACCCCTCCATAACTGTCTTCTGACATGCACATACATAT  500

seq1  AATAACTGATTTTTAAATGCAATTTTATAAATTGTAGTGCTCTTAATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGATTTTTAAATGCAATTTTATAAATTGTAGTGCTCTTAATCCT  550

seq1  AGCACTTAGAAGGTGGAGGTAGAAGATCATGCATTCAAGTTCAAATGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTAGAAGGTGGAGGTAGAAGATCATGCATTCAAGTTCAAATGAGT  600

seq1  TCAAATACAGTAATAACAAAACATGCAAAAACCTGTTCATTCTCTGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACAGTAATAACAAAACATGCAAAAACCTGTTCATTCTCTGTGTA  650

seq1  CATTTTCTTTGGAAATTACGAGGAAGTTCAAAAAGTAAGTTATCAACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTTGGAAATTACGAGGAAGTTCAAAAAGTAAGTTATCAACCCA  700

seq1  AAAAGGTAGTAAATGGAAATCTAAGGATCATAACTGGGGAACAAATCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTAGTAAATGGAAATCTAAGGATCATAACTGGGGAACAAATCTAA  750

seq1  AAAATTTGTAAGAATAAGAATAAATCAGA-GGGTCCAAGGAGGAACCAAC  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAATTTGTAAGAATAAGAATAAATCAGAGGGGTCCAAGGAGGAACCAAC  800

seq1  ATGGTAGCATAGGCTCCAAGGTCAGCACTCAGCAGGTGAGAGCAGAAGGA  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGGTAGCATAGGCTCC-AGGTCAGCACTCAGCAGGTGAGAGCAGAAGGA  849

seq1  TCTTGAATTTGAAGATAACCAGGACCACACAGAGAGCTGTAAGCCAGTCT  899
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  TCTTGAATTT-AAGATAACCA-GACCACACAGAGAGCTGTAAGCCAGTCT  897

seq1  GCTACAGAGTTGAGACTGTCTCAAAAAAAATTATAGGAAAGTACAAGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGAGTTGAGACTGTCTCAAAAAAAATTATAGGAAAGTACAAGAAG  947

seq1  GTAAACTGCAGGGCTCTTATTTACCCATAGAACTGAGAGCGCCTGTAAAT  999
      ||||||||||||||| ||||||  |||||||||||||||||||||| |||
seq2  GTAAACTGCAGGGCTTTTATTTTACCATAGAACTGAGAGCGCCTGT-AAT  996

seq1  TTAGTGAAGCCATCACTTTAAGTCTTTCTCGATTAACAACAACAAAACAG  1049
      ||||||||||||| |||||||||||||||||||| || |||||||||| |
seq2  TTAGTGAAGCCAT-ACTTTAAGTCTTTCTCGATT-ACCACAACAAAACGG  1044

seq1  ACTCTGAAGTTGGAAAGCTAACATGTAAATCATCTCAATTTTTAGTATTG  1099
      ||||||||| ||| |||||||||| ||||||||||||| |||||| | ||
seq2  ACTCTGAAG-TGGGAAGCTAACAT-TAAATCATCTCAA-TTTTAG-AATG  1090

seq1  TTTTAAGATTTATTTTTATGTGTAC  1124
      |||||||   || ||||||||||||
seq2  TTTTAAG-GATAATTTTATGTGTAC  1114

seq1: chr6_29732221_29733385
seq2: B6Ng01-061L14.g_69_1215 (reverse)

seq1  TTTGATAGAAACTGGAGCCT-CAGTGGTTTTCAGATAAAGCCCTGCTAGT  49
      ||||| ||||||| |||| | |||||| |||| ||||||| ||||  |||
seq2  TTTGA-AGAAACTCGAGCTTACAGTGG-TTTCCGATAAAG-CCTGGCAGT  47

seq1  GGTCACCTCAGAGAGACTCATCTGTTAATGTTCCTTTACCAAGTTGGAAG  99
       ||||||||||||| ||||||||| |||||| ||  |||| |||||||||
seq2  AGTCACCTCAGAGA-ACTCATCTG-TAATGTCCC--TACC-AGTTGGAAG  92

seq1  AGTGTAGGCCTGTGTGGTCTTTTTCCAAAACAATATTTAATTTTTTTCTC  149
      |  |||| |   ||| |||||||||| ||||||| ||||    |||||||
seq2  AAGGTAGCC---TGTAGTCTTTTTCC-AAACAAT-TTTA----TTTTCTC  133

seq1  TTTAAGGCATTACCAAGATGAGTACATGTGATAAAAGTGTAGGACAAATT  199
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  TTTAAGGCATTACCAAGATGAGTACA-GTGATAAAAGTGTA-GACAAATT  181

seq1  TTTTTTTATGGTAATTGTGTGTTATCTGCCTTTTGAAGTTGACATTATAT  249
      ||||||||||||||| ||||| || | |||||||||||||||||||||||
seq2  TTTTTTTATGGTAATGGTGTG-TAACCGCCTTTTGAAGTTGACATTATAT  230

seq1  GCTCTATTTTTTTCATGGTAATTGTGTGTTATCTGTCTTTTGAAGTTGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATTTTTTTCATGGTAATTGTGTGTTATCTGTCTTTTGAAGTTGAC  280

seq1  ATTATATGCTCTAGGCTTAAAGAGGGGCTTCTTTTCCTCGAGCATAAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGCTCTAGGCTTAAAGAGGGGCTTCTTTTCCTCGAGCATAAATA  330

seq1  GAAATTTGTCTTTAACAAGGCTGTATTAGTTAAAGCTTAATTGAGTTCCA  399
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGTCTTTAACAAGGCTGTATTAGTTAAAGCTTAATTGAGTTCCA  380

seq1  GATTACTTTATGCCTTGGAGACAAAAGTAGAATAG-TTTTTTTTTTTTTT  448
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GATTACTTTATGCCTTGGAGACAAAAGTAGAATAGTTTTTTTTTTTTTTT  430

seq1  TAGTACATTATTTCACATTATTTTTAGGAATAAAGGACAGAATATGTTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACATTATTTCACATTATTTTTAGGAATAAAGGACAGAATATGTTAT  480

seq1  CTCATGTCTATAATCTCAGCACTTAGGAGGATGAAGCAGGAGAATGGCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTCTATAATCTCAGCACTTAGGAGGATGAAGCAGGAGAATGGCTA  530

seq1  TAAATTCAAGGCCAGCCTGAGTTACAGAGTGAGCTTGAGGCCAGTTTGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCAAGGCCAGCCTGAGTTACAGAGTGAGCTTGAGGCCAGTTTGGG  580

seq1  ATAAAGGGTCTATATACCAGACCTTGGATAAAGGCTTGTACCATGCCCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGTCTATATACCAGACCTTGGATAAAGGCTTGTACCATGCCCCT  630

seq1  GTGGTGTGTGACCTGCAGGGCTTTGTTATAACTCTTGCTTCTCTAATGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGTGACCTGCAGGGCTTTGTTATAACTCTTGCTTCTCTAATGAA  680

seq1  CTGTGAGCTGTTTTATGTAAATTCATTTATTTATTGTGTGCTAAACATCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCTGTTTTATGTAAATTCATTTATTTATTGTGTGCTAAACATCA  730

seq1  CTTAGTCCTAAGGTGATAGTATCAGTAAGTTACCATTCTTGCCCTAGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCCTAAGGTGATAGTATCAGTAAGTTACCATTCTTGCCCTAGAAA  780

seq1  AGAGTATAGGAAGTGTCCCAGGGAAAGAAGTAAATATAATTTCGTTTGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATAGGAAGTGTCCCAGGGAAAGAAGTAAATATAATTTCGTTTGCT  830

seq1  ATGGGCAGTCATGAAAGCAGACTTGTAGCTTGGGGAGGTCAGCCTTGACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAGTCATGAAAGCAGACTTGTAGCTTGGGGAGGTCAGCCTTGACT  880

seq1  GAGGTATATCACCCCTGGAAACTAGTTGCTTTCACAGTGTAGCTGAACCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATATCACCCCTGGAAACTAGTTGCTTTCACAGTGTAGCTGAACCT  930

seq1  TTATTGTATTCCCTTGTTACAGCTTTAAAAGTCCAGAAATTCATACTCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTATTCCCTTGTTACAGCTTTAAAAGTCCAGAAATTCATACTCAT  980

seq1  ATTTGCAAGCCATTAGCCTTTTAGGACTTGTTCATGCAAGCCAAACTTAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAAGCCATTAGCCTTTTAGGACTTGTTCATGCAAGCCAAACTTAC  1030

seq1  TTACATAAGGCTTATTTAAAACAAACTGGTAGGTAACTTGTACTTATGGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAAGGCTTATTTAAAACAAACTGGTAGGTAACTTGTACTTATGGC  1080

seq1  TAGATTCTGATCTGACCTGAAGCATCAGTAAGTCAGAGAGTAGTCTGATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCTGATCTGACCTGAAGCATCAGTAAGTCAGAGAGTAGTCTGATT  1130

seq1  TTTAAGGTTTGGAATTC  1165
      |||||||||||||||||
seq2  TTTAAGGTTTGGAATTC  1147