BAC Information

Click to search

BAC

Clone NameB6Ng01-061P08
Chromosome6 (Build37)7 (Build37)
Map Location 18,835,386 - 18,835,96865,306,941 - 65,308,055
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061P08.bB6Ng01-061P08.g
ACCDH882492DH882493
length9741,100
definitionDH882492|Mus musculus domesticus DNA, BAC clone: B6Ng01-061P08, 5' end.DH882493|Mus musculus domesticus DNA, BAC clone: B6Ng01-061P08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,386 - 18,835,968)(65,306,941 - 65,308,055)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcatgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccattctgttggtggcct
ttttgtcttattgacagtgtcttttgccttacggaagctttgcaatttta
tgaggtcccatttattgattctcgatcttacagcacaagccattgctgtt
ctattcaggaattttcccctgtgcccatatctttgaggctttttcctact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttaat
ccacttagatttgaccttagtacaaggagataggaatggatcaattctca
ttcttctacatgataaccgctagttgtgtcagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaatatcaagtg
accataggtgtgtgggctcatttctgggtcttcaattctattccattggt
ctacttgtctgtcactataccactaccatgcagtttttatcacaattgct
ctgtagtatgcctttaggctaggcatggtgattccaccggaggttttttt
tatccttgagcagagtttttactatcctagatttttttgttattccagat
gaatttacaaattgtcctttctaatttgttgaagaattgagttggaattt
tgatggggattgcattgaatctgttgattgcttttggcaagatagccatt
tatactatattgatcctgccaattcatgagcatgggagatctttccatct
tctgagacctcctttatttctttcttcagagacttgaagttcttatcata
cagatctttcattccttagttagagtcacgccaaggcaagtcttataaag
gacaacatttaattggggctggat
gaattcccttagtttgtctcaaattttaaagattacatcacacaggtttt
acaagtgcataacatatacataattatcacatctgagtcttatgcttggt
cctccatctcttgtggatcctctgataagccaggtcaagccaagtaccta
atgtggggaagcagctaatccatctccctgaaggttccactcatttctca
tttattttatttttttcatttcacttatctattttatcattatctattac
atatgaagcctatttgtagtactaagatgaaagatatatggtataatcac
aacatacattgagatgtagttgatggtattgtaagcagtaaagttcaaca
gcaaagactttgcaaagaagatagaacaatgtcttctacaactgatggtt
ctgaagctgaatatgaagtgagagtgcgacttcactgggactgggaggaa
gactaagaaaacaagaatagagaggggtcttgcaatcatattctctacgt
tatcctcctttatttttcattaaataattgtatcatttaattgctgttgt
gttgttttttgagttagggatttttatatagctgagcctggcctcacact
cattgccatttttcatgctgggattacatgtgaaaccacagcagctaatg
acccctgtatgtactgagattgttaaagacctttgatatattcctatagg
gaaatacatagacccatatgagtaagtatacttgcctcgctaatattttt
gttgatatgtttttgattgccataccacatttgtgaatatttatgatcaa
cttaagtctttaacatattcaccacctcaaagtttttccattttttacag
ttattccatccaaaacctgtttctagataattttatataatgttcatact
aaaaaaaatagagctctttcagaaatgatgcacatcacacttctacacaa
gaaacagaactcaactgagatatagcaggaaccatagaaatttgacgacg
gatcacaaatcaagaacgatttggttccttgaaagtttaccggatggatg
gcacttctagtaactaacagtaagacgagagacccgaactattaaattag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835386_18835968
seq2: B6Ng01-061P08.b_46_628 (reverse)

seq1  CTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATT  50
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  CTGCATGGTAGTGGTATAGTGACAGACAAGTAGACCAATGGAATAGAATT  50

seq1  GAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAA  100
      ||||||||||| |||| |||||||||||||||||||||||| || |||||
seq2  GAAGACCCAGAAATGAGCCCACACACCTATGGTCACTTGATATTTGACAA  100

seq1  GGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGT  150
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  GGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGT  150

seq1  GCTGGCACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATAC  200
      |||| ||||||| |  |||||| |||||||||||| |||| ||||||| |
seq2  GCTGACACAACTAGCGGTTATCATGTAGAAGAATGAGAATTGATCCATTC  200

seq1  TTATCTCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACAT  250
       ||||||| |||||||||||||||||||||||||| |||||||| |||||
seq2  CTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACAT  250

seq1  AAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTG  300
      |||||||||||||||||||||||||||||||||||| || ||||||||  
seq2  AAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTAGGAAAAAGCCTCA  300

seq1  AAGATATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGT  349
      |||||||||||| ||||||||| |||||||| |||||||||||||| |||
seq2  AAGATATGGGCACAGGGGAAAA-TTCCTGAATAGAACAGCAATGGCTTGT  349

seq1  GCTGTGAGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTT  399
      ||||| || | ||||||| | ||||||||||| || ||| | ||||| ||
seq2  GCTGTAAGATCGAGAATCAATAAATGGGACCTCATAAAATTGCAAAGCTT  399

seq1  CTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATT  449
      | | |||||||||||||| ||||||||||||||||| ||||||||||| |
seq2  CCGTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCACCAACAGAAT  449

seq1  GGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAAT  499

seq1  ATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCAT  549
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  ATATATAAAGAACTCATGAAGGTGGACTCCAGAAAATCAAATAACCCCAT  549

seq1  TAATAAATGGGGCTCAGAACTGAACAAAGAATTC  583
      ||| |||||||||||||| || ||||||||||||
seq2  TAAAAAATGGGGCTCAGAGCTAAACAAAGAATTC  583

seq1: chr7_65306941_65308055
seq2: B6Ng01-061P08.g_68_1167 (reverse)

seq1  CTAATTTTATTTAG-TCGGGTCTCTCTGTCTTACTGTTAGTTTTACTAGG  49
      ||||||| |  ||| ||||||||||| |||||||||||||  ||||||| 
seq2  CTAATTTAA--TAGTTCGGGTCTCTC-GTCTTACTGTTAG--TTACTAGA  45

seq1  AGTG-CATCCATCCTGTAAACTTTTTCAAGGAACCAAATCTTTCTTTGAT  98
      |||| ||||||||| ||||||  ||||||||||||||||| ||| |||||
seq2  AGTGCCATCCATCCGGTAAAC--TTTCAAGGAACCAAATCGTTC-TTGAT  92

seq1  TCTGTGATCTGTCTGTCATATTTCTATTGTTTCTTGCTATATTCTCAGTT  148
      | ||||||| ||| |||| ||||||| || ||| ||||||| |||||| |
seq2  T-TGTGATCCGTC-GTCAAATTTCTA-TGGTTCCTGCTATA-TCTCAG-T  137

seq1  TGAGTTCTGTTTCTTGTTGTAGAAGTTTGATGTGCATCATTTTCTGAAAG  198
      |||||||||||||||| ||||||||| |||||||||||| ||||||||||
seq2  TGAGTTCTGTTTCTTG-TGTAGAAGTGTGATGTGCATCA-TTTCTGAAAG  185

seq1  AGCTCTATTTTTTTTTAGTATGAACATTATATAAAATTATCTAGAAACAG  248
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTA-TTTTTTTTAGTATGAACATTATATAAAATTATCTAGAAACAG  234

seq1  GTTTTTGGATGGAATAACTGTAAAAAATGGAAAAACTTTGAGGTGGTGAA  298
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTTTGGATGGAATAACTGTAAAAAATGGAAAAACTTTGAGGTGGTGAA  283

seq1  TATGTTAAAGACTTAAGTTGATCATAAATATTCACAAATGTGGTATGGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAAAGACTTAAGTTGATCATAAATATTCACAAATGTGGTATGGCA  333

seq1  ATCAAAAACATATCAACAAAAATATTAGCGAGGCAAGTATACTTACTCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAACATATCAACAAAAATATTAGCGAGGCAAGTATACTTACTCAT  383

seq1  ATGGGTCTATGTATTTCCCTATAGGAATATATCAAAGGTCTTTAACAATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCTATGTATTTCCCTATAGGAATATATCAAAGGTCTTTAACAATC  433

seq1  TCAGTACATACAGGGGTCATTAGCTGCTGTGGTTTCACATGTAATCCCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACATACAGGGGTCATTAGCTGCTGTGGTTTCACATGTAATCCCAG  483

seq1  CATGAAAAATGGCAATGAGTGTGAGGCCAGGCTCAGCTATATAAAAATCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAATGGCAATGAGTGTGAGGCCAGGCTCAGCTATATAAAAATCC  533

seq1  CTAACTCAAAAAACAACACAACAGCAATTAAATGATACAATTATTTAATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCAAAAAACAACACAACAGCAATTAAATGATACAATTATTTAATG  583

seq1  AAAAATAAAGGAGGATAACGTAGAGAATATGATTGCAAGACCCCTCTCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAGGAGGATAACGTAGAGAATATGATTGCAAGACCCCTCTCTA  633

seq1  TTCTTGTTTTCTTAGTCTTCCTCCCAGTCCCAGTGAAGTCGCACTCTCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTTTCTTAGTCTTCCTCCCAGTCCCAGTGAAGTCGCACTCTCAC  683

seq1  TTCATATTCAGCTTCAGAACCATCAGTTGTAGAAGACATTGTTCTATCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTCAGCTTCAGAACCATCAGTTGTAGAAGACATTGTTCTATCTT  733

seq1  CTTTGCAAAGTCTTTGCTGTTGAACTTTACTGCTTACAATACCATCAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAAAGTCTTTGCTGTTGAACTTTACTGCTTACAATACCATCAACT  783

seq1  ACATCTCAATGTATGTTGTGATTATACCATATATCTTTCATCTTAGTACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCAATGTATGTTGTGATTATACCATATATCTTTCATCTTAGTACT  833

seq1  ACAAATAGGCTTCATATGTAATAGATAATGATAAAATAGATAAGTGAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAGGCTTCATATGTAATAGATAATGATAAAATAGATAAGTGAAAT  883

seq1  GAAAAAAATAAAATAAATGAGAAATGAGTGGAACCTTCAGGGAGATGGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATAAAATAAATGAGAAATGAGTGGAACCTTCAGGGAGATGGAT  933

seq1  TAGCTGCTTCCCCACATTAGGTACTTGGCTTGACCTGGCTTATCAGAGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCTTCCCCACATTAGGTACTTGGCTTGACCTGGCTTATCAGAGGA  983

seq1  TCCACAAGAGATGGAGGACCAAGCATAAGACTCAGATGTGATAATTATGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAGAGATGGAGGACCAAGCATAAGACTCAGATGTGATAATTATGT  1033

seq1  ATATGTTATGCACTTGTAAAACCTGTGTGATGTAATCTTTAAAATTTGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTATGCACTTGTAAAACCTGTGTGATGTAATCTTTAAAATTTGAG  1083

seq1  ACAAACTAAGGGAATTC  1115
      |||||||||||||||||
seq2  ACAAACTAAGGGAATTC  1100