BAC Information

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BAC

Clone NameB6Ng01-061P21
Chromosome6 (Build37)
Map Location 4,168,966 - 4,330,982
singlet/doubletdoublet
Overlap geneLOC667381, LOC100039965
Upstream geneEG667335, Samd9l, AI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1
Downstream geneCol1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061P21.bB6Ng01-061P21.g
ACCDH882518DH882519
length1,2081,016
definitionDH882518|Mus musculus domesticus DNA, BAC clone: B6Ng01-061P21, 5' end.DH882519|Mus musculus domesticus DNA, BAC clone: B6Ng01-061P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,168,966 - 4,170,237)(4,329,963 - 4,330,982)
sequence
gaattcttaaaaggtagcgactgtcacaaagcctgtttttttccaattca
gactcttctctgataattcctctagttttagattctctgtaattagactg
catttagattgcctgcacagtgcactctcgctgcctttctatcaattgcc
agaattcttcagggcagaataagttggacccctattgtcccctgatgctt
cccagctaattgtcccaaaagtactatggagagcctctttcaactcctct
cactctgagaaaagtctctataaaggcaggcagaatgcagaaagcagaga
ctcgtgctaagaatgagattgtttcataaaaatgtctgtgattattaact
catagaagatttatgttgcaagtggagagacttgataaggctcttttcct
tggccatattcatttttaccctggaatataaatgttgctaattgtagtta
aaattgcatttgctgtttgcccagccacaacagtgttctctttagttagt
tcaagtttgtagcatgtaaaattttttatttatcaaaatgttactagaat
aatactgtccagataatataaaatggctctccatagcagattaaatgaca
ctttcccaagctcacattccaaaaaaaaagcaaaaacaaaaacaaacaaa
caaaaaaacccaaaaaacaaacaagcaaacaaacagaaaaacaaattata
tcaagggaaagagccccttcctgaaacccttcttcccgggacctcagaga
ggaatggttgtattaacctagcctgcactctcaatttgttccaataaacc
tccaggaacagagagtcctgttttaatacggagccatgttaacataacgc
acagttcacctggcaaatctgtttctctccactatccgattttaactgct
tgttttgattgcctggaatatcctctgaggctcccctgtgcctccaaagg
tcagcactgacattttatagagcaacataactttggaagctagcagaaaa
gatcaacacagtgagtggctatccatcttgacagtatatgttcatgcact
gagatcccagcagatgttggatctgctgggtaaggaacaggagtcagagt
agataggctgtcttcaaatcatataataagaaattagggactaatgaatg
atcgtcttatcgttatgatcctgagtacgatatgcgacatctgtggggac
agtctcta
gaattcactggatgaacacaagattctggtttgctgaaatgaagaaatgc
agctcatcgtcaatgttctcagaaatgtttggagggtgaattcggtgctt
ttgctttggggttccccgtatttaagcagacaactcaactacaggcctct
gcaaactcagtgtcatctgagcaagcttaagggacagcaaaatttgatag
tagctgtttaagagcaagccacagatggggtagcaacctgggctgctgag
atgactcagtaggcaaaagtgctttcctacttgcattgtgagtctgataa
cctgagttcaattcggtggttggtggtagaaggataaaccggctccagag
agctgtcctgtgacctccacatgcttacttggaactcatgcatgctcccc
tctccaaaatacacactaatttttctttctttcttttttaaatgtgaaga
gccctcatatgccatggcaatcacagagacacagccgaatctgctctctg
aaaaacacaaacaagctaggaggcctcttcatcacacagtgcattaggaa
acagctgttcagcttcagattctaatacgaattcttgggacggatcttgt
tctatttgcacttgtaaatgttgtttgggcagaaaagctggatgaaatat
ttcagaaatctttccgtagggtcctggttctgagctaaactttagagccc
ccgtgctgtttggctgtctttctcttctctagtgctttctggctgaatgt
gaagaggaacacatcccaagaggctttgagcgagcagcaatgttgcttat
agttgaatgcaaatgctctcagatgtaccagagccatttccatggagtgt
cacattagagatccttaagggcatgggagaaaggggtcggagaatggaga
ggaagatcttattcctttcctgtgctgacacatttcttctgcagactttt
actgcatttgggaattttaaattataatcctcttctggagaaagatcaac
ttgggctgtgcctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_4168966_4170237
seq2: B6Ng01-061P21.b_48_1255

seq1  GAATTCTTAAAAGGTAGCGACTGTCACAAAGCCTGTTTTTTTCCAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAAGGTAGCGACTGTCACAAAGCCTGTTTTTTTCCAATTCA  50

seq1  GACTCTTCTCTGATAATTCCTCTAGTTTTAGATTCTCTGTAATTAGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCTCTGATAATTCCTCTAGTTTTAGATTCTCTGTAATTAGACTG  100

seq1  CATTTAGATTGCCTGCACAGTGCACTCTCGCTGCCTTTCTATCAATTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGATTGCCTGCACAGTGCACTCTCGCTGCCTTTCTATCAATTGCC  150

seq1  AGAATTCTTCAGGGCAGAATAAGTTGGACCCCTATTGTCCCCTGATGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTTCAGGGCAGAATAAGTTGGACCCCTATTGTCCCCTGATGCTT  200

seq1  CCCAGCTAATTGTCCCAAAAGTACTATGGAGAGCCTCTTTCAACTCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTAATTGTCCCAAAAGTACTATGGAGAGCCTCTTTCAACTCCTCT  250

seq1  CACTCTGAGAAAAGTCTCTATAAAGGCAGGCAGAATGCAGAAAGCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGAGAAAAGTCTCTATAAAGGCAGGCAGAATGCAGAAAGCAGAGA  300

seq1  CTCGTGCTAAGAATGAGATTGTTTCATAAAAATGTCTGTGATTATTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGCTAAGAATGAGATTGTTTCATAAAAATGTCTGTGATTATTAACT  350

seq1  CATAGAAGATTTATGTTGCAAGTGGAGAGACTTGATAAGGCTCTTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGATTTATGTTGCAAGTGGAGAGACTTGATAAGGCTCTTTTCCT  400

seq1  TGGCCATATTCATTTTTACCCTGGAATATAAATGTTGCTAATTGTAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATATTCATTTTTACCCTGGAATATAAATGTTGCTAATTGTAGTTA  450

seq1  AAATTGCATTTGCTGTTTGCCCAGCCACAACAGTGTTCTCTTTAGTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCATTTGCTGTTTGCCCAGCCACAACAGTGTTCTCTTTAGTTAGT  500

seq1  TCAAGTTTGTAGCATGTAAAATTTTTTATTTATCAAAATGTTACTAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTGTAGCATGTAAAATTTTTTATTTATCAAAATGTTACTAGAAT  550

seq1  AATACTGTCCAGATAATATAAAATGGCTCTCCATAGCAGATTAAATGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTCCAGATAATATAAAATGGCTCTCCATAGCAGATTAAATGACA  600

seq1  CTTTCCCAAGCTCACATTCCAAAAAAAAAGCAAAAACAAAAACAAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAAGCTCACATTCCAAAAAAAAAGCAAAAACAAAAACAAACAAA  650

seq1  CAAAAAAACCCAAAAAACAAACAAGCAAACAAACAGAAAAACAAATTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACCCAAAAAACAAACAAGCAAACAAACAGAAAAACAAATTATA  700

seq1  TCAAGGGAAAGAGCCCCTTCCTGAAACCCTTCTTCCCGGGACCTCAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGAAAGAGCCCCTTCCTGAAACCCTTCTTCCCGGGACCTCAGAGA  750

seq1  GGAATGGTTGTATTAACCTAGCCTGCACTCTCAATTTGTTCCAATAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGTTGTATTAACCTAGCCTGCACTCTCAATTTGTTCCAATAAACC  800

seq1  TCCAGGAACAGAGAGTCCTGTTTTAATACGGAGCCATGTTAACATAACGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAACAGAGAGTCCTGTTTTAATACGGAGCCATGTTAACATAACGC  850

seq1  ACAGTTCACCTGGCAAATCTGTTTCTCTCCACTATCCGATTTTAACTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCACCTGGCAAATCTGTTTCTCTCCACTATCCGATTTTAACTGCT  900

seq1  TGTTTTTGATTGCCTGGAATATCCTCTGAGGCTCCCCTGTGCCTCCAAAG  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTTTGATTGCCTGGAATATCCTCTGAGGCTCCCCTGTGCCTCCAAAG  949

seq1  GTCAGGCAACTGACATTTTAATAAGAGCAACATAACTTTGGAAGCTAGCA  1000
      |||||   ||||||||||||   |||||||||||||||||||||||||||
seq2  GTCAG--CACTGACATTTTA--TAGAGCAACATAACTTTGGAAGCTAGCA  995

seq1  G-AAAGATCAACACAGTGAGTGGCTTATCCAATCTTGACAAGTTATATGG  1049
      | |||||||||||||||||||||| ||||| |||||||||   ||||| |
seq2  GAAAAGATCAACACAGTGAGTGGC-TATCC-ATCTTGACA--GTATAT-G  1040

seq1  TTCATGCCACCTGAGGATCCCCAGCAGATGTTGGGATCTGCCTTGGGTAA  1099
      |||||||   |||| ||| ||||||||||||| ||||||||  |||||||
seq2  TTCATGC--ACTGA-GAT-CCCAGCAGATGTT-GGATCTGC--TGGGTAA  1083

seq1  GAGACCAGGGAAGGTCAGAGTTAGATTTAGGGCTGAGCACTTCAAACTCA  1149
      | || ||||    ||||||| |||||    |||||    ||||||| |||
seq2  G-GAACAGG---AGTCAGAG-TAGAT---AGGCTG---TCTTCAAA-TCA  1121

seq1  T-TAATAAATAGAGAAAGAGTTAAAGGAGAAATCTAAATCTAGAAATTGA  1198
      | |||||     |||||    | | |||  |||         |||  |||
seq2  TATAATA-----AGAAA----TTAGGGACTAAT---------GAA--TGA  1151

seq1  TTCTGCTCTCATAATACGTATAATGAACTCTGAGAGTAAACAGAATTAAG  1248
         |  ||| ||    ||  | |||| | ||  |||||    ||  || |
seq2  ---TCGTCTTAT----CG--TTATGATC-CT--GAGTA---CGA--TATG  1184

seq1  TGCCAGTCTGTGGGGACAGT-TCTA  1272
       | || |||||||||||||| ||||
seq2  CGACA-TCTGTGGGGACAGTCTCTA  1208

seq1: chr6_4329963_4330982
seq2: B6Ng01-061P21.g_70_1085 (reverse)

seq1  TCTATGGCACAGCCCAGGTTGATCTTTTCTTCCAGAAGA-GATTATAATT  49
      |||| ||||||||||| ||||||||||   ||||||||| |||||||| |
seq2  TCTA-GGCACAGCCCAAGTTGATCTTT--CTCCAGAAGAGGATTATAA-T  46

seq1  TTAAAATTCCCAAATGCAGT-AAAGTCTTGCAGAAGAAATGTGTCAGCAC  98
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  TTAAAATTCCCAAATGCAGTAAAAGTC-TGCAGAAGAAATGTGTCAGCAC  95

seq1  AAGGAAAGGAATAAGATCTTCCTCTCCATTCTCCGGCCCCTTTCTCCCAT  148
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  -AGGAAAGGAATAAGATCTTCCTCTCCATTCTCCGACCCCTTTCTCCCAT  144

seq1  GCCCTTAAGGTTCTCTAGTGTGACACTCCATGGAAATGGCTCTGGTACAT  198
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  GCCCTTAAGGATCTCTAATGTGACACTCCATGGAAATGGCTCTGGTACAT  194

seq1  CTGAGAGCATTTGCATTCAACTATAAGCAACATTGCTGCTCGCTCAAAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCATTTGCATTCAACTATAAGCAACATTGCTGCTCGCTCAAAGC  244

seq1  CTCTTGGGATGTGTTCCTCTTCACATTCAGCCAGAAAGCACTAGAGAAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGGATGTGTTCCTCTTCACATTCAGCCAGAAAGCACTAGAGAAGA  294

seq1  GAAAGACAGCCAAACAGCACGGGGGCTCTAAAGTTTAGCTCAGAACCAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACAGCCAAACAGCACGGGGGCTCTAAAGTTTAGCTCAGAACCAGG  344

seq1  ACCCTACGGAAAGATTTCTGAAATATTTCATCCAGCTTTTCTGCCCAAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACGGAAAGATTTCTGAAATATTTCATCCAGCTTTTCTGCCCAAAC  394

seq1  AACATTTACAAGTGCAAATAGAACAAGATCCGTCCCAAGAATTCGTATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTACAAGTGCAAATAGAACAAGATCCGTCCCAAGAATTCGTATTA  444

seq1  GAATCTGAAGCTGAACAGCTGTTTCCTAATGCACTGTGTGATGAAGAGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGAAGCTGAACAGCTGTTTCCTAATGCACTGTGTGATGAAGAGGC  494

seq1  CTCCTAGCTTGTTTGTGTTTTTCAGAGAGCAGATTCGGCTGTGTCTCTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGCTTGTTTGTGTTTTTCAGAGAGCAGATTCGGCTGTGTCTCTGT  544

seq1  GATTGCCATGGCATATGAGGGCTCTTCACATTTAAAAAAGAAAGAAAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCATGGCATATGAGGGCTCTTCACATTTAAAAAAGAAAGAAAGAA  594

seq1  AAATTAGTGTGTATTTTGGAGAGGGGAGCATGCATGAGTTCCAAGTAAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTGTGTATTTTGGAGAGGGGAGCATGCATGAGTTCCAAGTAAGC  644

seq1  ATGTGGAGGTCACAGGACAGCTCTCTGGAGCCGGTTTATCCTTCTACCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGGTCACAGGACAGCTCTCTGGAGCCGGTTTATCCTTCTACCAC  694

seq1  CAACCACCGAATTGAACTCAGGTTATCAGACTCACAATGCAAGTAGGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACCGAATTGAACTCAGGTTATCAGACTCACAATGCAAGTAGGAAA  744

seq1  GCACTTTTGCCTACTGAGTCATCTCAGCAGCCCAGGTTGCTACCCCATCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTTGCCTACTGAGTCATCTCAGCAGCCCAGGTTGCTACCCCATCT  794

seq1  GTGGCTTGCTCTTAAACAGCTACTATCAAATTTTGCTGTCCCTTAAGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTGCTCTTAAACAGCTACTATCAAATTTTGCTGTCCCTTAAGCTT  844

seq1  GCTCAGATGACACTGAGTTTGCAGAGGCCTGTAGTTGAGTTGTCTGCTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGATGACACTGAGTTTGCAGAGGCCTGTAGTTGAGTTGTCTGCTTA  894

seq1  AATACGGGGAACCCCAAAGCAAAAGCACCGAATTCACCCTCCAAACATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGGGGAACCCCAAAGCAAAAGCACCGAATTCACCCTCCAAACATTT  944

seq1  CTGAGAACATTGACGATGAGCTGCATTTCTTCATTTCAGCAAACCAGAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACATTGACGATGAGCTGCATTTCTTCATTTCAGCAAACCAGAAT  994

seq1  CTTGTGTTCATCCAGTGAATTC  1020
      ||||||||||||||||||||||
seq2  CTTGTGTTCATCCAGTGAATTC  1016