BAC Information

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BAC

Clone NameB6Ng01-062K08
Chromosome6 (Build37)
Map Location 126,557,072 - 126,696,069
singlet/doubletdoublet
Overlap geneKcna1, Kcna6
Upstream geneVwf, Tmem16b, Ntf3, LOC100043565, LOC667427, LOC100043567, Kcna5
Downstream geneLOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b, Prmt8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062K08.bB6Ng01-062K08.g
ACCDH882979DH882980
length5201,081
definitionDH882979|Mus musculus domesticus DNA, BAC clone: B6Ng01-062K08, 5' end.DH882980|Mus musculus domesticus DNA, BAC clone: B6Ng01-062K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,695,549 - 126,696,069)(126,557,072 - 126,558,165)
sequence
gaattctctctggcagcttctccagccctaagatcaacaccaccgtctgg
ctattgacaccctcctcctcctcctcattaaaaacctccaccttacagtt
cattataaatagtactcacccacaggataggtctttgcatttggttttcc
ttggtacattgctcagggggaaaacttagcagaaaggaaatagtcacatc
acttccagccccttactgactgaggaaggaacattggggctcagattcac
attgcccagttgttttcaaatagcttgtaggaccagtggatactactagc
aggaaattcaccctttaggtttagaatatctggtttatctttagtgccat
cccccctgctctggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgggtgggagggagaaagaaagaaacagcttaagttatgagt
aaggcgaaaaaacatcctactgagattcttcccccccccccccttggttt
ataggatcgatagcgttctc
gaattctagaacttcatgaagatgaaggtatgcactctgtgggcaggttt
acacaaatactcacactctaactttggccaacccaaacctggatggtctt
gggagtgttgcagtcgatagtgaggagacagactttttctctaaatgaag
ataactagccctactaagacacaagtactgtgccaagaactcatatttag
aaataaactattgtctagaagtggaagacacagggttagggagcattggg
gaaaaaagaaaacagagatcactattttttttattaaagctttgcagaga
aataacaaaaaattatatcccccatcttctacgcacaaacatcgggcaaa
gaccacacacacacacacaaatcagatccgtgcagaaaatactttccaag
ggaaatactaatctcaatcacagaactttggcaggctgcagagatttgga
ggaacatcaagaaagatctaaagataatgatattggtcagaaaattagac
acagctatgcaatccaataagacagtgagattcgacactgatccacttgc
aggggttcccgagccagctggggtcagaagaggaatcagtcctgggctga
acccctgtgggtcacagttagagcacaacacttgggatgagtctctgttc
tggatcctaggaggggaaaagaggggacgacaaagacaaaggatgggagt
ggaggatgggcactcagtggtgcagacagataacaggagaggcgggaaga
gaaaacggaaaactgaacaacagtaagaagaaattctagcagtcatgttg
tttgttctccaaaatgcacagagaagtcaagggaccacggactacactga
aacgccatcaatcccatgccctgcgctggggtcccagggctgtccccatg
ctgtctctggcttagacgtatgctacactcagcttccttaaagacgtgtc
atgaaagtggcttatatatccactgggaacttatggaaagttcttaatta
tgctatgccacaggcatgacttctgggtcaaacccaaatcttcccacggt
aacattttccccttttttgctacattttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126695549_126696069
seq2: B6Ng01-062K08.b_45_564 (reverse)

seq1  GAGAAAGCTATAGATCCTAGAAAACCTGGGGGGGGGGGGGAAGAATGGAC  50
      ||||| ||||| ||||||| ||| |  |||||||||||||||||||   |
seq2  GAGAACGCTATCGATCCTATAAACCAAGGGGGGGGGGGGGAAGAAT-CTC  49

seq1  AGTAGGATGATTCTACACTTCACAGACAACTTTTGCTGTTTCATTTTTTT  100
      ||||||||| || | | | | ||  | |||||  |||||||| || ||| 
seq2  AGTAGGATGTTTTTTCGCCTTACTCATAACTTAAGCTGTTTCTTTCTTTC  99

seq1  TACCTTCCCTCTACACACACACACACACACACACACACACACACACACAC  150
      | ||| ||  | ||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCACCCACACACACACACACACACACACACACACACACACACAC  149

seq1  ACACACTCCAGAGCAGGGGGGATGGCACTAAAGATAAACCAGATATTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCCAGAGCAGGGGGGATGGCACTAAAGATAAACCAGATATTCTA  199

seq1  AACCTAAAGGGTGAATTTCCTGCTAGTAGTATCCACTGGTCCTACAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAAGGGTGAATTTCCTGCTAGTAGTATCCACTGGTCCTACAAGCT  249

seq1  ATTTGAAAACAACTGGGCAATGTGAATCTGAGCCCCAATGTTCCTTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAACAACTGGGCAATGTGAATCTGAGCCCCAATGTTCCTTCCTC  299

seq1  AGTCAGTAAGGGGCTGGAAGTGATGTGACTATTTCCTTTCTGCTAAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTAAGGGGCTGGAAGTGATGTGACTATTTCCTTTCTGCTAAGTTT  349

seq1  TCCCCCTGAGCAATGTACCAAGGAAAACCAAATGCAAAGACCTATCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGAGCAATGTACCAAGGAAAACCAAATGCAAAGACCTATCCTGT  399

seq1  GGGTGAGTACTATTTATAATGAACTGTAAGGTGGAGGTTTTTAATGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGTACTATTTATAATGAACTGTAAGGTGGAGGTTTTTAATGAGGA  449

seq1  GGAGGAGGAGGGTGTCAATAGCCAGACGGTGGTGTTGATCTTAGGGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGGTGTCAATAGCCAGACGGTGGTGTTGATCTTAGGGCTGG  499

seq1  AGAAGCTGCCAGAGAGAATTC  521
      |||||||||||||||||||||
seq2  AGAAGCTGCCAGAGAGAATTC  520

seq1: chr6_126557072_126558165
seq2: B6Ng01-062K08.g_66_1146

seq1  GAATTCTAGAACTTCATGAAGATGAAGGTATGCACTCTGTGGGCAGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAACTTCATGAAGATGAAGGTATGCACTCTGTGGGCAGGTTT  50

seq1  ACACAAATACTCACACTCTAACTTTGGCCAACCCAAACCTGGATGGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATACTCACACTCTAACTTTGGCCAACCCAAACCTGGATGGTCTT  100

seq1  GGGAGTGTTGCAGTCGATAGTGAGGAGACAGACTTTTTCTCTAAATGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGTTGCAGTCGATAGTGAGGAGACAGACTTTTTCTCTAAATGAAG  150

seq1  ATAACTAGCCCTACTAAGACACAAGTACTGTGCCAAGAACTCATATTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAGCCCTACTAAGACACAAGTACTGTGCCAAGAACTCATATTTAG  200

seq1  AAATAAACTATTGTCTAGAAGTGGAAGACACAGGGTTAGGGAGCATTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACTATTGTCTAGAAGTGGAAGACACAGGGTTAGGGAGCATTGGG  250

seq1  GAAAAAAGAAAACAGAGATCACTATTTTTTTTATTAAAGCTTTGCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGAAAACAGAGATCACTATTTTTTTTATTAAAGCTTTGCAGAGA  300

seq1  AATAACAAAAAATTATATCCCCCATCTTCTACGCACAAACATCGGGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAAAAATTATATCCCCCATCTTCTACGCACAAACATCGGGCAAA  350

seq1  GACCACACACACACACACAAATCAGATCCGTGCAGAAAATACTTTCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACACACACACACACAAATCAGATCCGTGCAGAAAATACTTTCCAAG  400

seq1  GGAAATACTAATCTCAATCACAGAACTTTGGCAGGCTGCAGAGATTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATACTAATCTCAATCACAGAACTTTGGCAGGCTGCAGAGATTTGGA  450

seq1  GGAACATCAAGAAAGATCTAAAGATAATGATATTGGTCAGAAAATTAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATCAAGAAAGATCTAAAGATAATGATATTGGTCAGAAAATTAGAC  500

seq1  ACAGCTATGCAATCCAATAAGACAGTGAGATTCGACACTGATCCACTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATGCAATCCAATAAGACAGTGAGATTCGACACTGATCCACTTGC  550

seq1  AGGGGTTCCCGAGCCAGCTGGGGTCAGAAGAGGAATCAGTCCTGGGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTCCCGAGCCAGCTGGGGTCAGAAGAGGAATCAGTCCTGGGCTGA  600

seq1  ACCCCTGTGGGTCACAGTTAGAGCACAACACTTGGGATGAGTCTCTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGTGGGTCACAGTTAGAGCACAACACTTGGGATGAGTCTCTGTTC  650

seq1  TGGATCCTAGGAGGGGAAAAGAGGGGACGACAAAGACAAAGGATGGGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCTAGGAGGGGAAAAGAGGGGACGACAAAGACAAAGGATGGGAGT  700

seq1  GGAGGATGGGCACTCAGTGGTGCAGACAGATAACAGGAGAGGCGGGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGGGCACTCAGTGGTGCAGACAGATAACAGGAGAGGCGGGAAGA  750

seq1  GAAAACGGAAAACTGAACAACAGTAAGAAGAAATTCTAGCAGTCATGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGGAAAACTGAACAACAGTAAGAAGAAATTCTAGCAGTCATGTTG  800

seq1  TTTGTTCTCCAAAATGCACAGAGAAGTCAAGGGACCACGGACTACACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTCCAAAATGCACAGAGAAGTCAAGGGACCACGGACTACACTGA  850

seq1  AACGCCATCAATCCCATGCCCTGCGCTGGGGTCCCAGGGCTGTCCCCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCATCAATCCCATGCCCTGCGCTGGGGTCCCAGGGCTGTCCCCATG  900

seq1  CTGTCCCTGGCTTAGACGTATGCTACACTCAGCTTCCTTAAAGACGTGTC  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGGCTTAGACGTATGCTACACTCAGCTTCCTTAAAGACGTGTC  950

seq1  ATGAAAGTGGCTTTATATATCCACTGGGAACTTATGGAAAGTTCTTAATT  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTGGC-TTATATATCCACTGGGAACTTATGGAAAGTTCTTAATT  999

seq1  ATGCTTATGCACACAGGCATGACTTCTTGGGTCAAACCCAAATCCTTCCA  1050
      |||| ||||| ||||||||||||||| ||||||||||||||||| | || 
seq2  ATGC-TATGC-CACAGGCATGACTTC-TGGGTCAAACCCAAATCTTCCC-  1045

seq1  CAACCGTAACCATTTTTCCCCTTTTTCTGCTTAACCATTTTTTT  1094
        || |||||   ||||||||||||| ||||    |||||||||
seq2  --ACGGTAAC--ATTTTCCCCTTTTT-TGCT---ACATTTTTTT  1081